Ss1.1-Pig4-TMW8018H03.5
|
ATAACTTTCCTCAGTCACCACCAACTCAGTATTCTCCCATGCACAATATGGGATTGTTGC
CAATGCACCCCCTCCAGATTCCTGCCCCATCCTGGCCTATTCATGGCCCAGTGATCCATT
CTGCACCAGGCAGTGCCCCCAGCAATATTGGCCTGAATGATCCCAGCATCATCTTTGCAC
AGCCTGCCGCCAGACCTGTGGCAATCCCTAGCTCCTCTCATGATGGACACTGGCCTCGTA
CTGTGGCTCCAAATTCCCTGGTGAACAATGGTACAGTGGGGAATTCAGAGCCAGGATTTC
CAGGACTGAATCCTCCAATTCCTTGGGAACATGCACCACGACCCCATTTTCCTCTTGTCC
CAGCTTCGTGGCCTTATGGTTTGCATCAGAACTTCATGCATCAGGGAAATGCCAGATTTC
AGCACAACAAACCTTTCTATACTCAAGACAGATGTGCCGCCCGTCGGTGTAGAGAGCGTT
GCCCCCACCCACCAAGAGGAAACGTGTCGGAGTAATGCAAGTCCATTTTCTTTCAGCTGG
TCTACCGATGCACAGCAACCAGCCAATCCTGCTGTCTCAAGGGTATCCGTACCTCAATGT
CAGTTACATTCAGCAGAAAAAGTGAAATTTAATGGAAAGCAAAACAAATCAGGTCCTGAT
TTAAAATTTTAACACATGTTTAGATAGCTTATTTAAATTCAAAGACTGTTTTTAAAGACT
GTATTATTTGTATATAAATATGAACTATAGTTTTTACTAGTATCACCAAATTGAGTGATA
CAAATTTCATCTATTTTATTACCCTATTTTTAAGGGAATTTTATGTTTTGTTTAACCTTG
ATGAATTGTACAAAGAGAGAATTTAAAAAATTACATTCTTTATTTTCTATTAGCTGTATT
CATACTTTGGTTGCTTCAGACTTTATATATATCGTTCTTAAGAATTAGGAAAGACTTTCA
TGTGTTTTAAATTTGTCACTTCTATTCTTTACAGAACCTTGTAGTGCCAAAAATTTTTAA
AAAGTTTAAAAAAAATAAAATAAAACTTCAACATGAAGATAAAGAATTTTTTGTTTTACA
TTCTTGTATATTGAAAATATTCCAATTTGAATAGAAATTTGCTTTTGTTTGTATTTGAAG
TAGTTCTATTTTAAGTTAATAAACCTTTTTGACAAG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATAACTTTCCTCAGTCACCACCAACTCAGTATTCTCCCATGCACAATATGGGATTGTTGC
CAATGCACCCCCTCCAGATTCCTGCCCCATCCTGGCCTATTCATGGCCCAGTGATCCATT
CTGCACCAGGCAGTGCCCCCAGCAATATTGGCCTGAATGATCCCAGCATCATCTTTGCAC
AGCCTGCCGCCAGACCTGTGGCAATCCCTAGCTCCTCTCATGATGGACACTGGCCTCGTA
CTGTGGCTCCAAATTCCCTGGTGAACAATGGTACAGTGGGGAATTCAGAGCCAGGATTTC
CAGGACTGAATCCTCCAATTCCTTGGGAACATGCACCACGACCCCATTTTCCTCTTGTCC
CAGCTTCGTGGCCTTATGGTTTGCATCAGAACTTCATGCATCAGGGAAATGCCAGATTTC
AGCACAACAAACCTTTCTATACTCAAGACAGATGTGCCGCCCGTCGGTGTAGAGAGCGTT
GCCCCCACCCACCAAGAGGAAACGTGTCGGAGTAATGCAAGTCCATTTTCTTTCAGCTGG
TCTACCGATGCACAGCAACCAGCCAATCCTGCTGTCTCAAGGGTATCCGTACCTCAATGT
CAGTTACATTCAGCAGAAAAAGTGAAATTTAATGGAAAGCAAAACAAATCAGGTCCTGAT
TTAAAATTTTAACACATGTTTAGATAGCTTATTTAAATTCAAAGACTGTTTTTAAAGACT
GTATTATTTGTATATAAATATGAACTATAGTTTTTACTAGTATCACCAAATTGAGTGATA
CAAATTTCATCTATTTTATTACCCTATTTTTAAGGGAATTTTATGTTTTGTTTAACCTTG
ATGAATTGTACAAAGAGAGAATTTAAAAAATTACATTCTTTATTTTCTATTAGCTGTATT
CATACTTTGGTTGCTTCAGACTTTATATATATCGTTCTTAAGAATTAGGAAAGACTTTCA
TGTGTTTTAAATTTGTCACTTCTATTCTTTACAGAACCTTGTAGTGCCAAAAATTTTTAA
AAAGTTTAAAAAAAATAAAATAAAACTTCAACATGAAGATAAAGAATTTTTTGTTTTACA
TTCTTGTATATTGAAAATATTCCAATTTGAATAGAAATTTGCTTTTGTTTGTATTTGAAG
TAGTTCTATTTTAAGTTAATAAACCTTTTTGACAAG
|
|
gi|61876420|ref|XP_583814.1| |
Protein identifier
|
gi|61876420|ref|XP_583814.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-286, gnl|bosTau2|chr3 (63014302-63014587) |
|
1-286, gnl|canFam2|chr15 (11945871-11945450) |
|
1-286, gnl|danRer3|chr22 (31593377-31592917) |
|
1-286, gnl|dasNov1|scaffold_7249 (67422-67001) |
|
1-286, gnl|fr1|chrUn (244827665-244828194) |
|
1-286, gnl|galGal2|chr8 (24647406-24647899) |
|
1-286, gnl|hg17|chr1 (52608704-52609125) |
|
1-286, gnl|Hg17|chr1 (52608993-52608708) |
|
1-286, gnl|loxAfr1|scaffold_2538 (61037-60616) |
|
1-286, gnl|mm7|chr4 (107932272-107931851) |
|
1-286, gnl|Mm7|chr4 (107931981-107932266) |
|
1-286, gnl|monDom2|scaffold_70 (1276473-1275986) |
|
1-286, gnl|oryCun1|scaffold_137350 (8976-9397) |
|
1-286, gnl|panTro1|chr1 (50833597-50834018) |
|
1-286, gnl|rheMac2|chr1 (55265695-55266116) |
|
1-286, gnl|rn3|chr5 (129857434-129857013) |
|
1-286, gnl|xenTro1|scaffold_197 (255479-255945) |
| |
|
446-1176, gnl|bosTau2|chr3 (63019253-63019975) |
|
446-1176, gnl|Hg17|chr1 (52601697-52600975) |
|
446-1176, gnl|Mm7|chr4 (107935155-107935853) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-286, gnl|bosTau2|chr3 (63014302-63014587) |
|
1-286, gnl|canFam2|chr15 (11945871-11945450) |
|
1-286, gnl|danRer3|chr22 (31593377-31592917) |
|
1-286, gnl|dasNov1|scaffold_7249 (67422-67001) |
|
1-286, gnl|fr1|chrUn (244827665-244828194) |
|
1-286, gnl|galGal2|chr8 (24647406-24647899) |
|
1-286, gnl|hg17|chr1 (52608704-52609125) |
|
1-286, gnl|Hg17|chr1 (52608993-52608708) |
|
1-286, gnl|loxAfr1|scaffold_2538 (61037-60616) |
|
1-286, gnl|mm7|chr4 (107932272-107931851) |
|
1-286, gnl|Mm7|chr4 (107931981-107932266) |
|
1-286, gnl|monDom2|scaffold_70 (1276473-1275986) |
|
1-286, gnl|oryCun1|scaffold_137350 (8976-9397) |
|
1-286, gnl|panTro1|chr1 (50833597-50834018) |
|
1-286, gnl|rheMac2|chr1 (55265695-55266116) |
|
1-286, gnl|rn3|chr5 (129857434-129857013) |
|
1-286, gnl|xenTro1|scaffold_197 (255479-255945) |
| |
|
446-1176, gnl|bosTau2|chr3 (63019253-63019975) |
|
446-1176, gnl|Hg17|chr1 (52601697-52600975) |
|
446-1176, gnl|Mm7|chr4 (107935155-107935853) |
|
cmu (0.372787) |
|
fat (0.294855) |
|
cte (0.29274) |
|
liv (0.292569) |
|
kid (0.259471) |
|
mgp (0.230681) |
|
eye (0.170503) |
|
cut (0.169924) |
|
mga (0.160205) |
|
tbr (0.154178) |
|
bfe (0.149858) |
|
ski (0.146735) |
|
csk (0.140746) |
|
ret (0.128733) |
|
thg (0.126791) |
|
ecc (0.115035) |
|
ldo (0.0970026) |
|
cmu (0.372787) |
|
fat (0.294855) |
|
cte (0.29274) |
|
liv (0.292569) |
|
kid (0.259471) |
|
mgp (0.230681) |
|
eye (0.170503) |
|
cut (0.169924) |
|
mga (0.160205) |
|
tbr (0.154178) |
|
bfe (0.149858) |
|
ski (0.146735) |
|
csk (0.140746) |
|
ret (0.128733) |
|
thg (0.126791) |
|
ecc (0.115035) |
|
ldo (0.0970026) |
