Non-Coding RNA Search

Ss1.1-Pig4-TMW8018H09.3

Sequence:


               
               CGGCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCCCTGCCCCTCCTGTTCCAGCAGCAGC
CGCCGCTTCCCGGCTGAGTCCGCGCGGCCCCGGCGGCGCCAGGTGCGTCCTGCTGCGCGG
CTCCAGCCTGTGTCCGCCCCGCTGCCGAGATGGCGACGCGCTCGTGCCGGGAGAAGGCTC
AGAAGCTGAACGAGCAGCACCAGCTCATCTTGTCCAAGCTGCTGAGGGAGGAGGACAACA
AGTACTGCGCCGACTGCGAGGCCAAAGGTCCTCGATGGGCTTCCTGGAATATTGGTGTGT
TTATTTGCATCCGATGTGCTGGCATCCATAGGAATCTTGGGGTTCATATATCCAGGGTCA
AGTCAGTCAACCTAGACCAATGGACACCAGAACAGATTCAGTGCATGCAAGATATGGGAA
ATACTAAAGCAAGACTACTATATGAAGCCAATCTTCCAGAGAACTTTCGAAGACCACAGA
CAGATCAAGCAGTGGAATTTTTCATCAGAGATAAATATGAAAAGAAGAAATACTACGATA
AAAATGCTATAGCTATTTCAAATAAAGAAAAGGAAAAAAAAAAGGAAGAGAAAAAGAGAG
AAAAGGAGCCAGAGAAGTCTGTGAAACCTCTTACAACTGAAAAGCTGCAGAAGAAAGAAG
ATCAGCAATTGGAGCCTAAAAAAAGTACCAGCCCTAAAAAAGCTGCAGAGCCCACTGTTG
ATCTTTTAGGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCCCTGCCCCTCCTGTTCCAGCAGCAGC
CGCCGCTTCCCGGCTGAGTCCGCGCGGCCCCGGCGGCGCCAGGTGCGTCCTGCTGCGCGG
CTCCAGCCTGTGTCCGCCCCGCTGCCGAGATGGCGACGCGCTCGTGCCGGGAGAAGGCTC
AGAAGCTGAACGAGCAGCACCAGCTCATCTTGTCCAAGCTGCTGAGGGAGGAGGACAACA
AGTACTGCGCCGACTGCGAGGCCAAAGGTCCTCGATGGGCTTCCTGGAATATTGGTGTGT
TTATTTGCATCCGATGTGCTGGCATCCATAGGAATCTTGGGGTTCATATATCCAGGGTCA
AGTCAGTCAACCTAGACCAATGGACACCAGAACAGATTCAGTGCATGCAAGATATGGGAA
ATACTAAAGCAAGACTACTATATGAAGCCAATCTTCCAGAGAACTTTCGAAGACCACAGA
CAGATCAAGCAGTGGAATTTTTCATCAGAGATAAATATGAAAAGAAGAAATACTACGATA
AAAATGCTATAGCTATTTCAAATAAAGAAAAGGAAAAAAAAAAGGAAGAGAAAAAGAGAG
AAAAGGAGCCAGAGAAGTCTGTGAAACCTCTTACAACTGAAAAGCTGCAGAAGAAAGAAG
ATCAGCAATTGGAGCCTAAAAAAAGTACCAGCCCTAAAAAAGCTGCAGAGCCCACTGTTG
ATCTTTTAGGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6PK24_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6PK24_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-269, gnl|bosTau2|chr9 (7811689-7811975)
               

               
               1-269, gnl|Hg17|chr6 (71434276-71434567)
               

               
               1-269, gnl|Mm7|chr1 (24132474-24132171)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-269, gnl|bosTau2|chr9 (7811689-7811975)
               

               
               1-269, gnl|Hg17|chr6 (71434276-71434567)
               

               
               1-269, gnl|Mm7|chr1 (24132474-24132171)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               rec (0.17307)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)

	1-269, gnl\|bosTau2\|chr9 (7811689-7811975)
	1-269, gnl\|Hg17\|chr6 (71434276-71434567)
	1-269, gnl\|Mm7\|chr1 (24132474-24132171)

	rec (0.17307)
	cut (0.169924)
	cki (0.165235)
	cst (0.140036)
	che (0.136314)
	eep (0.122564)
	ecc (0.115035)