Non-Coding RNA Search

Ss1.1-Pig4-TMW8018H15.3

Sequence:


               
               GACCGAGGCGGCTATGGAGGAGACCGAAGTGGGGGGGGCTACGGAGGAGACCGTGGTAGT
GGCAGTGGCTATGGTGGGGACCGAAGTGGAGGCTACGGAGGAGACAGGAGTGGCGGCGGC
TATGGTGGAGACCGAAGTGGGGGCTATGGAGGAGACCGAGGTGGCTATGGAGGCAAGATG
GGAGGAAGAAACGACTACAGAAATGATCAGCGCAACCGACCATACTGATGACTGTTTTGA
ATGTTCCTTTGTCTCTGACATGATCCATAGTGAAATTGCCAGAGTTTTGCCTGCTGCTTT
CCTCGTGGCCTCTTCTTGGGTAGTGAAATTAAGTGACATTTGGATTTTTATTTGGGTGGG
AGGGCTGGGACAATTTTTCTTTTAGAAATGTCCGTTGAAATTTCCCCTTTTAGTTTCCAA
CCTTCTCATTCCCAACCCTTGAAGCTAAGTGCATTGTAAAATATTGCCAAAATGGAAGGT
GTTTTGTAATACTGCAATAAAGACTGCTTGTTTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCGAGGCGGCTATGGAGGAGACCGAAGTGGGGGGGGCTACGGAGGAGACCGTGGTAGT
GGCAGTGGCTATGGTGGGGACCGAAGTGGAGGCTACGGAGGAGACAGGAGTGGCGGCGGC
TATGGTGGAGACCGAAGTGGGGGCTATGGAGGAGACCGAGGTGGCTATGGAGGCAAGATG
GGAGGAAGAAACGACTACAGAAATGATCAGCGCAACCGACCATACTGATGACTGTTTTGA
ATGTTCCTTTGTCTCTGACATGATCCATAGTGAAATTGCCAGAGTTTTGCCTGCTGCTTT
CCTCGTGGCCTCTTCTTGGGTAGTGAAATTAAGTGACATTTGGATTTTTATTTGGGTGGG
AGGGCTGGGACAATTTTTCTTTTAGAAATGTCCGTTGAAATTTCCCCTTTTAGTTTCCAA
CCTTCTCATTCCCAACCCTTGAAGCTAAGTGCATTGTAAAATATTGCCAAAATGGAAGGT
GTTTTGTAATACTGCAATAAAGACTGCTTGTTTTGT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-188, gnl|bosTau2|chr19 (7922015-7921828)
               

               
               1-188, gnl|Hg17|chr17 (31195968-31196155)
               

               
               1-188, gnl|Mm7|chr11 (83574837-83575009)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-188, gnl|bosTau2|chr19 (7922015-7921828)
               

               
               1-188, gnl|Hg17|chr17 (31195968-31196155)
               

               
               1-188, gnl|Mm7|chr11 (83574837-83575009)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               cki (0.495704)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               mgm (0.180343)
               

               
               eli (0.151814)
               

               
               che (0.136314)
               

               
               sug (0.127291)
               

               
               cly (0.120642)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.495704)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               mgm (0.180343)
               

               
               eli (0.151814)
               

               
               che (0.136314)
               

               
               sug (0.127291)
               

               
               cly (0.120642)

	1-188, gnl\|bosTau2\|chr19 (7922015-7921828)
	1-188, gnl\|Hg17\|chr17 (31195968-31196155)
	1-188, gnl\|Mm7\|chr11 (83574837-83575009)

	cki (0.495704)
	tes (0.207814)
	nlu (0.191681)
	mgm (0.180343)
	eli (0.151814)
	che (0.136314)
	sug (0.127291)
	cly (0.120642)