Ss1.1-Pig4-TMW8018J02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGCTCCAGCAGCCGCCGCTAGACCGGCGCCAACTCCTGCCCTGCCCCTACCAGCGGCA CGACCATGTCCCATCACTGGGGATACGACAAGCACAACGGACCTGAGCACTGGCATAAGG ACTTCCCCATCGCCAAGGGAGATCGCCAGTCCCCTGTTGACATCAACACCAGCACAGCTG TTCACGACCCTGCCCTGAAGCCTCTGTCCCTTTGCTATGAGCAAGCGACTTCTCAGAGAA TTGTCAACAACGGCCACTCTTTCAACGTGGAGTTTGATAGCTCCCAGGACAAAGGCGTGC TGGAAGGTGGACCTCTTGCTGGCACTTACAGATTGATTCAGTTTCACTTTCACTGGGGTT CATCTGATGGGCAAGGTTCTGAGCATACTGTGGATAAAAAGAAATATGCTGCAGAGCTAC ACTTGGTTCATTGGAACACCAAATACAAGGACTTTGGAGAAGCTGCACAACAGCCTGATG GACTGGCTGTTTTGGGTGTTTTTTTGAAGATTGGCAATGCTCAGCCAGGCCTCCAGAAAA TCGTTGATGTTCTGGATTCCATTAAAACAAAGGGTAAGAGTGTGGAATTCACTGGCTTTG ACCCTCGTGACCTCCTCCCCGGAAGCTTGGACTACTGGACCTACCCAGGGTCCCTGACCA CCCCCCCTCTCCTGGAAAGTGTGACGTGGATTGTGCTCAGAGAACCCATCTCTGTTAGCA GTGGGCAGATGATGAAATTCCGCACCCTGAACTTCAACAAGGAGGGTGAACCTGAACACC CGATGGTGGACAACTGGCGCCCAACTCAGCCACTGAAAAATAGACAAATCAGAGCTTCCT TCCAATAAGATGGTCCTAGAGACAGCGTCCAGCGAAGAATCTTTGGCTTTCCCTTAGCAC AAATCCACCTTGGTGAACTGGTCTCTGGCTGCCATGCATCTGGTTTTCTAGATCCTTCAT CTCTCACCTGACATGCTTACTACTGAAATGTGAAAACCTAGACCAATTGTTATGCTTGGC AGAATTGCTGTGATTTGTGCTTTGCTTATGGTAGTAGCTTTTCTCTAATGGAGAATATAA TATATGGAGTAGGAGAGAAGTACCTTGATGTTGTTCATAGCACGTGGGATAATGAGCACT CACAATTGTTCACTGAAATGCCATTTTTAAACAGTGAGAAAGTAGGATGAGTACAAATCT ATATAATGAGATAAACTGAGCTGTGTAATATAAATCAGGTAAAGTCATCATGATCCTATG TAATGTATATCAGAGAAAATAAATGTTTGTGATTCCCAGATGATATATTAAAGAAAAAAC TTTAATTCTTATATATTTGTAGCAATGTTATCTTACATCTGAATTATGTCATAATTTAGT GACTTTTGAACTCTGGAGATATAAATGAAGTATTATCTGTAAAAATTGTTATAGTTGTGA TACAGAGTATATTTACATTCAAATAATATATCATAACTTAATAAATATTGTATTTTAGAT ACATTCTCTAATAAAATCCAGAATTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGCTCCAGCAGCCGCCGCTAGACCGGCGCCAACTCCTGCCCTGCCCCTACCAGCGGCA CGACCATGTCCCATCACTGGGGATACGACAAGCACAACGGACCTGAGCACTGGCATAAGG ACTTCCCCATCGCCAAGGGAGATCGCCAGTCCCCTGTTGACATCAACACCAGCACAGCTG TTCACGACCCTGCCCTGAAGCCTCTGTCCCTTTGCTATGAGCAAGCGACTTCTCAGAGAA TTGTCAACAACGGCCACTCTTTCAACGTGGAGTTTGATAGCTCCCAGGACAAAGGCGTGC TGGAAGGTGGACCTCTTGCTGGCACTTACAGATTGATTCAGTTTCACTTTCACTGGGGTT CATCTGATGGGCAAGGTTCTGAGCATACTGTGGATAAAAAGAAATATGCTGCAGAGCTAC ACTTGGTTCATTGGAACACCAAATACAAGGACTTTGGAGAAGCTGCACAACAGCCTGATG GACTGGCTGTTTTGGGTGTTTTTTTGAAGATTGGCAATGCTCAGCCAGGCCTCCAGAAAA TCGTTGATGTTCTGGATTCCATTAAAACAAAGGGTAAGAGTGTGGAATTCACTGGCTTTG ACCCTCGTGACCTCCTCCCCGGAAGCTTGGACTACTGGACCTACCCAGGGTCCCTGACCA CCCCCCCTCTCCTGGAAAGTGTGACGTGGATTGTGCTCAGAGAACCCATCTCTGTTAGCA GTGGGCAGATGATGAAATTCCGCACCCTGAACTTCAACAAGGAGGGTGAACCTGAACACC CGATGGTGGACAACTGGCGCCCAACTCAGCCACTGAAAAATAGACAAATCAGAGCTTCCT TCCAATAAGATGGTCCTAGAGACAGCGTCCAGCGAAGAATCTTTGGCTTTCCCTTAGCAC AAATCCACCTTGGTGAACTGGTCTCTGGCTGCCATGCATCTGGTTTTCTAGATCCTTCAT CTCTCACCTGACATGCTTACTACTGAAATGTGAAAACCTAGACCAATTGTTATGCTTGGC AGAATTGCTGTGATTTGTGCTTTGCTTATGGTAGTAGCTTTTCTCTAATGGAGAATATAA TATATGGAGTAGGAGAGAAGTACCTTGATGTTGTTCATAGCACGTGGGATAATGAGCACT CACAATTGTTCACTGAAATGCCATTTTTAAACAGTGAGAAAGTAGGATGAGTACAAATCT ATATAATGAGATAAACTGAGCTGTGTAATATAAATCAGGTAAAGTCATCATGATCCTATG TAATGTATATCAGAGAAAATAAATGTTTGTGATTCCCAGATGATATATTAAAGAAAAAAC TTTAATTCTTATATATTTGTAGCAATGTTATCTTACATCTGAATTATGTCATAATTTAGT GACTTTTGAACTCTGGAGATATAAATGAAGTATTATCTGTAAAAATTGTTATAGTTGTGA TACAGAGTATATTTACATTCAAATAATATATCATAACTTAATAAATATTGTATTTTAGAT ACATTCTCTAATAAAATCCAGAATTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 99-294, gnl|bosTau2|chr14 (46842274-46842469) | |
| 99-294, gnl|canFam2|chr29 (34963944-34964167) | |
| 99-294, gnl|danRer3|chr2 (20356936-20356728) | |
| 99-294, gnl|dasNov1|scaffold_20649 (9278-9055) | |
| 99-294, gnl|echTel1|scaffold_89488 (990-1207) | |
| 99-294, gnl|fr1|chrUn (133974481-133974687) | |
| 99-294, gnl|hg17|chr8 (86564742-86564965) | |
| 99-294, gnl|Hg17|chr8 (86564752-86564947) | |
| 99-294, gnl|loxAfr1|scaffold_4588 (64529-64752) | |
| 99-294, gnl|mm7|chr3 (14909418-14909641) | |
| 99-294, gnl|Mm7|chr3 (14909428-14909623) | |
| 99-294, gnl|monDom2|scaffold_4 (69383661-69383435) | |
| 99-294, gnl|oryCun1|scaffold_214167 (179175-178951) | |
| 99-294, gnl|panTro1|chr7 (88686202-88686425) | |
| 99-294, gnl|rheMac2|chr8 (87989113-87989336) | |
| 99-294, gnl|rn3|chr2 (88036097-88035874) | |
| 99-294, gnl|tetNig1|chr6 (5523202-5523409) | |
| 99-294, gnl|xenTro1|scaffold_492 (766180-765960) | |
| 297-419, gnl|bosTau2|chr14 (46851953-46852075) | |
| 297-419, gnl|canFam2|chr29 (34972309-34972453) | |
| 297-419, gnl|danRer3|chr2 (20355211-20355069) | |
| 297-419, gnl|dasNov1|scaffold_20649 (1208-1063) | |
| 297-419, gnl|echTel1|scaffold_321540 (42710-42860) | |
| 297-419, gnl|fr1|chrUn (133975753-133975884) | |
| 297-419, gnl|galGal2|chr2 (122220053-122220200) | |
| 297-419, gnl|hg17|chr8 (86573168-86573315) | |
| 297-419, gnl|Hg17|chr8 (86573173-86573295) | |
| 297-419, gnl|loxAfr1|scaffold_4588 (74140-74285) | |
| 297-419, gnl|mm7|chr3 (14916611-14916747) | |
| 297-419, gnl|Mm7|chr3 (14916616-14916738) | |
| 297-419, gnl|monDom2|scaffold_4 (69372506-69372350) | |
| 297-419, gnl|oryCun1|scaffold_137763 (4926-4794) | |
| 297-419, gnl|panTro1|chr7 (88694709-88694857) | |
| 297-419, gnl|rheMac2|chr8 (87997913-87998060) | |
| 297-419, gnl|rn3|chr2 (88029352-88029211) | |
| 297-419, gnl|tetNig1|chr6 (5523965-5524088) | |
| 297-419, gnl|xenTro1|scaffold_492 (811124-811255) | |
| 727-1080, gnl|bosTau2|chr14 (46857860-46858217) | |
| 727-1080, gnl|Hg17|chr8 (86580149-86580514) | |
| 727-1080, gnl|Mm7|chr3 (14921564-14921929) | |
| 1091-1528, gnl|bosTau2|chr14 (46858209-46858631) | |
| 1091-1528, gnl|Hg17|chr8 (86580506-86582288) | |
| 1091-1528, gnl|Mm7|chr3 (14921915-14922365) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 99-294, gnl|bosTau2|chr14 (46842274-46842469) | |
| 99-294, gnl|canFam2|chr29 (34963944-34964167) | |
| 99-294, gnl|danRer3|chr2 (20356936-20356728) | |
| 99-294, gnl|dasNov1|scaffold_20649 (9278-9055) | |
| 99-294, gnl|echTel1|scaffold_89488 (990-1207) | |
| 99-294, gnl|fr1|chrUn (133974481-133974687) | |
| 99-294, gnl|hg17|chr8 (86564742-86564965) | |
| 99-294, gnl|Hg17|chr8 (86564752-86564947) | |
| 99-294, gnl|loxAfr1|scaffold_4588 (64529-64752) | |
| 99-294, gnl|mm7|chr3 (14909418-14909641) | |
| 99-294, gnl|Mm7|chr3 (14909428-14909623) | |
| 99-294, gnl|monDom2|scaffold_4 (69383661-69383435) | |
| 99-294, gnl|oryCun1|scaffold_214167 (179175-178951) | |
| 99-294, gnl|panTro1|chr7 (88686202-88686425) | |
| 99-294, gnl|rheMac2|chr8 (87989113-87989336) | |
| 99-294, gnl|rn3|chr2 (88036097-88035874) | |
| 99-294, gnl|tetNig1|chr6 (5523202-5523409) | |
| 99-294, gnl|xenTro1|scaffold_492 (766180-765960) | |
| 297-419, gnl|bosTau2|chr14 (46851953-46852075) | |
| 297-419, gnl|canFam2|chr29 (34972309-34972453) | |
| 297-419, gnl|danRer3|chr2 (20355211-20355069) | |
| 297-419, gnl|dasNov1|scaffold_20649 (1208-1063) | |
| 297-419, gnl|echTel1|scaffold_321540 (42710-42860) | |
| 297-419, gnl|fr1|chrUn (133975753-133975884) | |
| 297-419, gnl|galGal2|chr2 (122220053-122220200) | |
| 297-419, gnl|hg17|chr8 (86573168-86573315) | |
| 297-419, gnl|Hg17|chr8 (86573173-86573295) | |
| 297-419, gnl|loxAfr1|scaffold_4588 (74140-74285) | |
| 297-419, gnl|mm7|chr3 (14916611-14916747) | |
| 297-419, gnl|Mm7|chr3 (14916616-14916738) | |
| 297-419, gnl|monDom2|scaffold_4 (69372506-69372350) | |
| 297-419, gnl|oryCun1|scaffold_137763 (4926-4794) | |
| 297-419, gnl|panTro1|chr7 (88694709-88694857) | |
| 297-419, gnl|rheMac2|chr8 (87997913-87998060) | |
| 297-419, gnl|rn3|chr2 (88029352-88029211) | |
| 297-419, gnl|tetNig1|chr6 (5523965-5524088) | |
| 297-419, gnl|xenTro1|scaffold_492 (811124-811255) | |
| 727-1080, gnl|bosTau2|chr14 (46857860-46858217) | |
| 727-1080, gnl|Hg17|chr8 (86580149-86580514) | |
| 727-1080, gnl|Mm7|chr3 (14921564-14921929) | |
| 1091-1528, gnl|bosTau2|chr14 (46858209-46858631) | |
| 1091-1528, gnl|Hg17|chr8 (86580506-86582288) | |
| 1091-1528, gnl|Mm7|chr3 (14921915-14922365) |
| Expressed library(ies): 39 entry(ies) | More info |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
| sto (3.7763) | |
| cst (3.50091) | |
| ret (2.3172) | |
| duo (1.55521) | |
| sag (1.27901) | |
| lin (1.16482) | |
| rec (1.03842) | |
| kid (1.03788) | |
| lyg (0.532411) | |
| pan (0.471921) | |
| fco (0.471624) | |
| cut (0.339847) | |
| fhi (0.339155) | |
| cje (0.330469) | |
| cki (0.330469) | |
| cty (0.31224) | |
| sme (0.305437) | |
| lun (0.300978) | |
| ski (0.29347) | |
| thg (0.253582) | |
| cbe (0.239234) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| col (0.195008) | |
| gul (0.177588) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| mga (0.160205) | |
| cli (0.152812) | |
| bfe (0.149858) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| ute (0.132784) | |
| cbr (0.127975) | |
| pgl (0.118483) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sto (3.7763) | |
| cst (3.50091) | |
| ret (2.3172) | |
| duo (1.55521) | |
| sag (1.27901) | |
| lin (1.16482) | |
| rec (1.03842) | |
| kid (1.03788) | |
| lyg (0.532411) | |
| pan (0.471921) | |
| fco (0.471624) | |
| cut (0.339847) | |
| fhi (0.339155) | |
| cje (0.330469) | |
| cki (0.330469) | |
| cty (0.31224) | |
| sme (0.305437) | |
| lun (0.300978) | |
| ski (0.29347) | |
| thg (0.253582) | |
| cbe (0.239234) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| col (0.195008) | |
| gul (0.177588) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| mga (0.160205) | |
| cli (0.152812) | |
| bfe (0.149858) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| ute (0.132784) | |
| cbr (0.127975) | |
| pgl (0.118483) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| eje (0.0988338) |