Ss1.1-Pig4-TMW8018J14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCGGGCGGGCGGCTACCGGGCGCGGAGCCGGGCCCGCGGCGATGGGAAATACAGTTATC AAAGTTGACTCCTGAAGAGAGAACCTAACAGACCATTAACAATGGAAGAAATTGAGAAAG TTATCAAAATGCCACCATCCCCCAAAACACCAGGTCCAGATGGCGTTTCAGGTTAAAAAA ATCCTTCATGAAGAAGAAAGATCTTAAGCAACATGATGGATTCAGAAGCTCATGAAAAGA GGCCACCGATCCTAACATCCTCAAAGCAAGATATATCACCACATATTGCAAATGTTAGTG AAATGAAGCATTATTTGTGTGGCTGCTGTGCAGCTTTCAACAATGTAGCAATCACATTTC CCATTCAGAAGGTCCTCTTTCGGCAGCAGCTGTATGGAATCAAAACCCGGGATGCAGTAC TTCAGTTGAGGAGGGATGGATTTCGAAACTTGTACCGAGGAATCCTTCCCCCATTAATGC AGAAGACAACTACGCTGGCACTTATGTTTGGTCTCTATGAGGATTTATCTTGCCTCCTCC GTAAGCATAGCAGTACCCCTGAGTTTGCAACCCGTAGCATGGCAGCAGTACTTGCAGGGA CAACAGAAGCAATTTTCACTCCATTGGAAAGGGTTCAAACCTTGCTTCAAGACCACAAGC ATCATGACAAATTTACAAACACTTATCAGGCTTTCAAAGCACTGAAATGCCATGGAATTA GAGAGTATTATCGAGGCTTGGTTCCTGTTCTTTTTCGTAATGGATTCAGCAATGTTCTTT TTTTTGGCCTTCGCGGTCCCATCAAGGAGCACCTGCCTACGGCGACGACTCACAGTGCTC ATTTGGTCAATGATTTTATTTGCGGAGGTCTGCTGGGTGCCATGCTGGGCATCTTGTTTT TTCCAGTTAATGTTGTAAAAACTCGTATGCAGTCTCAGATTGGTGGGGAATTTCAGTCTT TCCCCAAGGTTTTCCAAAAAATCTGGCTGGAACGGGACAGGAAACTGACAAATCTTTTCC GAGGTGCGCATCTGAATTACCATCGCTCCCTCATCTCTTGGGGCATAATTAATGCGACTT ACGAGTTCTTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCGGGCGGGCGGCTACCGGGCGCGGAGCCGGGCCCGCGGCGATGGGAAATACAGTTATC AAAGTTGACTCCTGAAGAGAGAACCTAACAGACCATTAACAATGGAAGAAATTGAGAAAG TTATCAAAATGCCACCATCCCCCAAAACACCAGGTCCAGATGGCGTTTCAGGTTAAAAAA ATCCTTCATGAAGAAGAAAGATCTTAAGCAACATGATGGATTCAGAAGCTCATGAAAAGA GGCCACCGATCCTAACATCCTCAAAGCAAGATATATCACCACATATTGCAAATGTTAGTG AAATGAAGCATTATTTGTGTGGCTGCTGTGCAGCTTTCAACAATGTAGCAATCACATTTC CCATTCAGAAGGTCCTCTTTCGGCAGCAGCTGTATGGAATCAAAACCCGGGATGCAGTAC TTCAGTTGAGGAGGGATGGATTTCGAAACTTGTACCGAGGAATCCTTCCCCCATTAATGC AGAAGACAACTACGCTGGCACTTATGTTTGGTCTCTATGAGGATTTATCTTGCCTCCTCC GTAAGCATAGCAGTACCCCTGAGTTTGCAACCCGTAGCATGGCAGCAGTACTTGCAGGGA CAACAGAAGCAATTTTCACTCCATTGGAAAGGGTTCAAACCTTGCTTCAAGACCACAAGC ATCATGACAAATTTACAAACACTTATCAGGCTTTCAAAGCACTGAAATGCCATGGAATTA GAGAGTATTATCGAGGCTTGGTTCCTGTTCTTTTTCGTAATGGATTCAGCAATGTTCTTT TTTTTGGCCTTCGCGGTCCCATCAAGGAGCACCTGCCTACGGCGACGACTCACAGTGCTC ATTTGGTCAATGATTTTATTTGCGGAGGTCTGCTGGGTGCCATGCTGGGCATCTTGTTTT TTCCAGTTAATGTTGTAAAAACTCGTATGCAGTCTCAGATTGGTGGGGAATTTCAGTCTT TCCCCAAGGTTTTCCAAAAAATCTGGCTGGAACGGGACAGGAAACTGACAAATCTTTTCC GAGGTGCGCATCTGAATTACCATCGCTCCCTCATCTCTTGGGGCATAATTAATGCGACTT ACGAGTTCTTGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 170-1092, gnl|bosTau2|chr8 (29066780-29065858) | |
| 170-1092, gnl|canFam2|chr1 (103679720-103679136) | |
| 170-1092, gnl|canFam2|chr1 (103678806-103679501) | |
| 170-1092, gnl|danRer3|chrNA (105202334-105201746) | |
| 170-1092, gnl|dasNov1|scaffold_11573 (9940-9358) | |
| 170-1092, gnl|dasNov1|scaffold_87868 (6495-7194) | |
| 170-1092, gnl|echTel1|scaffold_257694 (510-1101) | |
| 170-1092, gnl|fr1|chrUn (52042311-52042877) | |
| 170-1092, gnl|hg17|chr8 (81669593-81670175) | |
| 170-1092, gnl|Hg17|chr9 (37878591-37877668) | |
| 170-1092, gnl|hg17|chrX (93470170-93470899) | |
| 170-1092, gnl|loxAfr1|scaffold_17434 (27896-28478) | |
| 170-1092, gnl|loxAfr1|scaffold_56331 (7784-7096) | |
| 170-1092, gnl|Mm7|chr4 (45413995-45413069) | |
| 170-1092, gnl|mm7|chr7 (124251483-124250901) | |
| 170-1092, gnl|monDom2|scaffold_19 (10827872-10828457) | |
| 170-1092, gnl|monDom2|scaffold_19 (10828791-10828091) | |
| 170-1092, gnl|oryCun1|scaffold_209086 (30525-31107) | |
| 170-1092, gnl|panTro1|chr7 (83799099-83799681) | |
| 170-1092, gnl|panTro1|chrX (96392545-96393293) | |
| 170-1092, gnl|rheMac2|chr8 (83022051-83022712) | |
| 170-1092, gnl|rheMac2|chrX (93098942-93099679) | |
| 170-1092, gnl|rn3|chr14 (45846339-45846924) | |
| 170-1092, gnl|rn3|chr14 (45847256-45846556) | |
| 170-1092, gnl|tetNig1|chr1 (321752-321171) | |
| 170-1092, gnl|xenTro1|scaffold_196 (1602902-1603484) | |
| 170-1092, gnl|xenTro1|scaffold_196 (1603813-1603122) | |
| 171-313, gnl|bosTau2|chr23 (24940436-24940295) | |
| 171-313, gnl|Hg17|chr9 (37878589-37878447) | |
| 171-313, gnl|Mm7|chr7 (124250535-124250677) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 170-1092, gnl|bosTau2|chr8 (29066780-29065858) | |
| 170-1092, gnl|canFam2|chr1 (103679720-103679136) | |
| 170-1092, gnl|canFam2|chr1 (103678806-103679501) | |
| 170-1092, gnl|danRer3|chrNA (105202334-105201746) | |
| 170-1092, gnl|dasNov1|scaffold_11573 (9940-9358) | |
| 170-1092, gnl|dasNov1|scaffold_87868 (6495-7194) | |
| 170-1092, gnl|echTel1|scaffold_257694 (510-1101) | |
| 170-1092, gnl|fr1|chrUn (52042311-52042877) | |
| 170-1092, gnl|hg17|chr8 (81669593-81670175) | |
| 170-1092, gnl|Hg17|chr9 (37878591-37877668) | |
| 170-1092, gnl|hg17|chrX (93470170-93470899) | |
| 170-1092, gnl|loxAfr1|scaffold_17434 (27896-28478) | |
| 170-1092, gnl|loxAfr1|scaffold_56331 (7784-7096) | |
| 170-1092, gnl|Mm7|chr4 (45413995-45413069) | |
| 170-1092, gnl|mm7|chr7 (124251483-124250901) | |
| 170-1092, gnl|monDom2|scaffold_19 (10827872-10828457) | |
| 170-1092, gnl|monDom2|scaffold_19 (10828791-10828091) | |
| 170-1092, gnl|oryCun1|scaffold_209086 (30525-31107) | |
| 170-1092, gnl|panTro1|chr7 (83799099-83799681) | |
| 170-1092, gnl|panTro1|chrX (96392545-96393293) | |
| 170-1092, gnl|rheMac2|chr8 (83022051-83022712) | |
| 170-1092, gnl|rheMac2|chrX (93098942-93099679) | |
| 170-1092, gnl|rn3|chr14 (45846339-45846924) | |
| 170-1092, gnl|rn3|chr14 (45847256-45846556) | |
| 170-1092, gnl|tetNig1|chr1 (321752-321171) | |
| 170-1092, gnl|xenTro1|scaffold_196 (1602902-1603484) | |
| 170-1092, gnl|xenTro1|scaffold_196 (1603813-1603122) | |
| 171-313, gnl|bosTau2|chr23 (24940436-24940295) | |
| 171-313, gnl|Hg17|chr9 (37878589-37878447) | |
| 171-313, gnl|Mm7|chr7 (124250535-124250677) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.229595) | |
| nco (0.161734) |