Non-Coding RNA Search

Ss1.1-Pig4-TMW8018J23.5

Sequence:


               
               CTGGCCAGCGGTGTAATTGATAGATTTGGTGATCCTGGCTTTTGAAGCAAGAACCTGGAA
GCATGAGCGAGGGCATGAATCTTACTTGCACTTTATGTACACTTCCTGATTTGAAAGGAG
GAGGTTTGCAAAGAAATAAAATGGTGACAGATGCCACGGCGAGGCATCGCTGAAGCCTTA
ACAGCAGGAAACAGAAATGTGTGTCATCTGAACAATTTCCAGATGTTCTTAATCCAGGGC
TGTTGGGGTTTCTGGAGAATTATCACAACCTAATGACATTATTACCTCTAGAAAGGGCTG
CTGTCATAGTCATCAGTTTCTAAATCTCCAGGGACACTCCTTTTCCCTGGTCCTGCAACC
TAGACTTTCTGCCTCTGCCCCATTTTGATGGAATATGTCAATGCCATTCATTTTCTAGTA
TCACTTCTTATTTGGAGAACCTAATTCCCTGGAGGCAAAAGTAGACATTAATTGTTTTGA
TTGCTTTGTTGAAAGGAAATTTGAATTTAAATCAAAGAGTGGGAGGGGGATCTTCCTGGT
AGTTTGGAGCCAACAACCTCTGATAATGATGTCAAAAGACCTAATACATGTGCATCTTGA
ACAGTTTGAGACTGGAGATGGAGTTGGAACTGTGGACGTTCCTATTTTTCAGTTTTCCTT
TTTAATGGCCTCACCCTTCTTTAATTTAACAAAGTAAGAAAATCACAAAAAAACTAGGGT
GCTGAAATGTTAAAAGGAAATGGAAATAAAGCAAAAAATCCTGAAAAGCTGCTTGAGTTC
TTCCACATTTTCTGTCCCTAGTAGCCTCTTCTCAGCAGACTGGACCCTCCAGATCCACTG
TGGTTGGTAGTATGGCTGGAATTGTGGAATTTGCTAGAACTGTGGAAAGTTCTACTGCAG
TGAACACAGATTCTGCTGCCTGCAGAATTCTGTATTGAGTCCATGAAGGTTACTCTTAGT
TTCCAGTTCTATTTTCATATTTGTTAAATCCCTGTAATTTCTTGCTTGAAAACCCTATGC
ACATTAAGGGGCCAGAAACATTTTGTCACTTAACAGATGAATAGACTTTCCCAGAAGGAA
GCATATTTTCGTGTGTACCTGGCTTTGGAAAATTTTCAGATAAGACTTGTCTTTTTTTTC
TCACGAGTGCTCTATATTTTTTTTTCCTATAGTACTCATCACCTTCTAAGTTACTATGTA
AATTACTTATTTATTATGTTCATTGTCTTGCATCCTTCCTCTAGAGTGTAAGCACAATGA
AGACAGGGATTTTTGTATGTGTTCAATCAGTGGAATGTATTCCCAGCACCTAAAATAGTG
CTTGGCACATAGTAAGAGCTCAGTAAATACTTGTTGAATAAACTCTTGCCTTAGTATTTT
AATTGTTTGATTTATTTCCTCTATCTTGGGTAGGATGGGCTTGGTAGAATTTTTGCACAT
GTGTCTTTCTGTCATTGTTGACTTTAAGTTTAGGCTAAGAATTTTAGGAAGCTTTGATCA
TAGTGTCCTTTCATATTATCTGTTTGAAGAGGTCATTGGCAACTATGAATCTGAAGATTG
AACAAAGAGGATTCTGCCCTTCTATGTCCTGGAACTACAGGAGTACGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGCCAGCGGTGTAATTGATAGATTTGGTGATCCTGGCTTTTGAAGCAAGAACCTGGAA
GCATGAGCGAGGGCATGAATCTTACTTGCACTTTATGTACACTTCCTGATTTGAAAGGAG
GAGGTTTGCAAAGAAATAAAATGGTGACAGATGCCACGGCGAGGCATCGCTGAAGCCTTA
ACAGCAGGAAACAGAAATGTGTGTCATCTGAACAATTTCCAGATGTTCTTAATCCAGGGC
TGTTGGGGTTTCTGGAGAATTATCACAACCTAATGACATTATTACCTCTAGAAAGGGCTG
CTGTCATAGTCATCAGTTTCTAAATCTCCAGGGACACTCCTTTTCCCTGGTCCTGCAACC
TAGACTTTCTGCCTCTGCCCCATTTTGATGGAATATGTCAATGCCATTCATTTTCTAGTA
TCACTTCTTATTTGGAGAACCTAATTCCCTGGAGGCAAAAGTAGACATTAATTGTTTTGA
TTGCTTTGTTGAAAGGAAATTTGAATTTAAATCAAAGAGTGGGAGGGGGATCTTCCTGGT
AGTTTGGAGCCAACAACCTCTGATAATGATGTCAAAAGACCTAATACATGTGCATCTTGA
ACAGTTTGAGACTGGAGATGGAGTTGGAACTGTGGACGTTCCTATTTTTCAGTTTTCCTT
TTTAATGGCCTCACCCTTCTTTAATTTAACAAAGTAAGAAAATCACAAAAAAACTAGGGT
GCTGAAATGTTAAAAGGAAATGGAAATAAAGCAAAAAATCCTGAAAAGCTGCTTGAGTTC
TTCCACATTTTCTGTCCCTAGTAGCCTCTTCTCAGCAGACTGGACCCTCCAGATCCACTG
TGGTTGGTAGTATGGCTGGAATTGTGGAATTTGCTAGAACTGTGGAAAGTTCTACTGCAG
TGAACACAGATTCTGCTGCCTGCAGAATTCTGTATTGAGTCCATGAAGGTTACTCTTAGT
TTCCAGTTCTATTTTCATATTTGTTAAATCCCTGTAATTTCTTGCTTGAAAACCCTATGC
ACATTAAGGGGCCAGAAACATTTTGTCACTTAACAGATGAATAGACTTTCCCAGAAGGAA
GCATATTTTCGTGTGTACCTGGCTTTGGAAAATTTTCAGATAAGACTTGTCTTTTTTTTC
TCACGAGTGCTCTATATTTTTTTTTCCTATAGTACTCATCACCTTCTAAGTTACTATGTA
AATTACTTATTTATTATGTTCATTGTCTTGCATCCTTCCTCTAGAGTGTAAGCACAATGA
AGACAGGGATTTTTGTATGTGTTCAATCAGTGGAATGTATTCCCAGCACCTAAAATAGTG
CTTGGCACATAGTAAGAGCTCAGTAAATACTTGTTGAATAAACTCTTGCCTTAGTATTTT
AATTGTTTGATTTATTTCCTCTATCTTGGGTAGGATGGGCTTGGTAGAATTTTTGCACAT
GTGTCTTTCTGTCATTGTTGACTTTAAGTTTAGGCTAAGAATTTTAGGAAGCTTTGATCA
TAGTGTCCTTTCATATTATCTGTTTGAAGAGGTCATTGGCAACTATGAATCTGAAGATTG
AACAAAGAGGATTCTGCCCTTCTATGTCCTGGAACTACAGGAGTACGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               81-196, + strand, RNAz p=0.80787

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-196, + strand, RNAz p=0.80787

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_022073, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_022073, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1516, gnl|bosTau2|chr4 (61325017-61326547)
               

               
               2-1516, gnl|Hg17|chr14 (33464601-33463039)
               

               
               2-1516, gnl|Mm7|chr12 (52198999-52197534)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1516, gnl|bosTau2|chr4 (61325017-61326547)
               

               
               2-1516, gnl|Hg17|chr14 (33464601-33463039)
               

               
               2-1516, gnl|Mm7|chr12 (52198999-52197534)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               cbl (0.344392)
               

               
               isp (0.300752)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               tbr (0.154178)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               ret (0.128733)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)
               

               
               isp (0.300752)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               tbr (0.154178)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               ret (0.128733)

	2-1516, gnl\|bosTau2\|chr4 (61325017-61326547)
	2-1516, gnl\|Hg17\|chr14 (33464601-33463039)
	2-1516, gnl\|Mm7\|chr12 (52198999-52197534)

	cbl (0.344392)
	isp (0.300752)
	thg (0.253582)
	tra (0.246184)
	mgp (0.230681)
	aor (0.195274)
	sag (0.182715)
	sto (0.179824)
	gul (0.177588)
	tbr (0.154178)
	lin (0.145603)
	kid (0.129735)
	ret (0.128733)