Non-Coding RNA Search

Ss1.1-Pig4-TMW8018K06.5

Sequence:


               
               ATTGCGTTTTGATGCCACTAGGGATTCAGGAAACACTGCATGGGCTGTCAGTTGACTGAA
AAGTGAATTCCCAGAGTGTTTAAACCTCCAGGTTTTGAAACAGTATTAAAAGCTTGAGAA
CAGGGATTATGGGTGGCACTGCCATTTTTATTTTCCTTCATGCATGTTGTTTTCAGATCC
AGACGGCGTGTTCTGCCACTTTTGCTACTCTGCCTATTCAAAAACAGTAGGCACACTGGG
GCAATTATCATAGTCATCCAAGCCCTCTGCCGAACTTCAGGTAAGCCCGGGCAGAGAGCA
GGGTGGGACTGGTTTTTCCTCTCAATAGGCAGGAAGAGGCCTTAGGATGCCCTCATTGAG
AGGCAGCCCCAAGCACTTCACTGGTTCTCAAAGGCGTGGCCACCAGAACAGCTTCACCCC
ATTAGGAGCTTACTAGAAATGTGAATTCTTGAGTCCCAGCTTATGGATCAGAAACTGGGG
TGGGTGGGGCCTAACAATGATTCGATAAGCCCTCCAATGATCGTGAGGCTTACCGAAGTT
CTGAGCACCAGTGATCTAGAAAGTTCCACTGTAGTGAGTACTGCTTTGCAGCTATAGCCT
CACAAGTTAAGGGTCAGGAGATGAGGTGGTCTCAGCTCTCGGTGCCTCCTCCTTGCCTTG
GGAGTCTGACATGAACAGGTGAAGTTTCTTCATGAACTTTTTTGTTGATGGTATGCTTGC
TATTATGGCCAATATGTAAATGTTACTCTGAATACATATTTATATACCATGTTAGTGACA
TTATTTGAACATTTGTATGCGTATTTGTGAAGTTGTTTGCATCAGTTATTTTAAAAAAAT
TTCAGCCTAAGTTTTCTAAGAGGTATGTTGAATAAATTTTTTAAATCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGCGTTTTGATGCCACTAGGGATTCAGGAAACACTGCATGGGCTGTCAGTTGACTGAA
AAGTGAATTCCCAGAGTGTTTAAACCTCCAGGTTTTGAAACAGTATTAAAAGCTTGAGAA
CAGGGATTATGGGTGGCACTGCCATTTTTATTTTCCTTCATGCATGTTGTTTTCAGATCC
AGACGGCGTGTTCTGCCACTTTTGCTACTCTGCCTATTCAAAAACAGTAGGCACACTGGG
GCAATTATCATAGTCATCCAAGCCCTCTGCCGAACTTCAGGTAAGCCCGGGCAGAGAGCA
GGGTGGGACTGGTTTTTCCTCTCAATAGGCAGGAAGAGGCCTTAGGATGCCCTCATTGAG
AGGCAGCCCCAAGCACTTCACTGGTTCTCAAAGGCGTGGCCACCAGAACAGCTTCACCCC
ATTAGGAGCTTACTAGAAATGTGAATTCTTGAGTCCCAGCTTATGGATCAGAAACTGGGG
TGGGTGGGGCCTAACAATGATTCGATAAGCCCTCCAATGATCGTGAGGCTTACCGAAGTT
CTGAGCACCAGTGATCTAGAAAGTTCCACTGTAGTGAGTACTGCTTTGCAGCTATAGCCT
CACAAGTTAAGGGTCAGGAGATGAGGTGGTCTCAGCTCTCGGTGCCTCCTCCTTGCCTTG
GGAGTCTGACATGAACAGGTGAAGTTTCTTCATGAACTTTTTTGTTGATGGTATGCTTGC
TATTATGGCCAATATGTAAATGTTACTCTGAATACATATTTATATACCATGTTAGTGACA
TTATTTGAACATTTGTATGCGTATTTGTGAAGTTGTTTGCATCAGTTATTTTAAAAAAAT
TTCAGCCTAAGTTTTCTAAGAGGTATGTTGAATAAATTTTTTAAATCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               182-365, - strand, RNAz p=0.999324

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               182-365, - strand, RNAz p=0.999324

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-876, gnl|bosTau2|chr29 (34944390-34945275)
               

               
               1-876, gnl|Hg17|chr11 (63285338-63284425)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-876, gnl|bosTau2|chr29 (34944390-34945275)
               

               
               1-876, gnl|Hg17|chr11 (63285338-63284425)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               elu (0.385356)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)

	1-876, gnl\|bosTau2\|chr29 (34944390-34945275)
	1-876, gnl\|Hg17\|chr11 (63285338-63284425)

	elu (0.385356)
	hea (0.204499)
	fcc (0.197785)
	isp (0.150376)
	spl (0.143184)
	pla (0.133672)
	thg (0.126791)
	ecc (0.115035)