Ss1.1-Pig4-TMW8018K12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTTTGCGGGCGTCCGTCGTCGTCGCCGGTCGGGAGCCGGAGGGGCCGTGAAGATGGCGT CGACCAGCCGTTTGGATGCTCTTCCAAGAGTCACATGTCCAAACCATCCAGATGCAATCT TAGTGGAAGACTACAGAGCTGGTGATATGATCTGTCCTGAATGTGGCCTGGTTGTAGGTG ACCGGGTTATCGATGTGGGATCTGAGTGGAGAACTTTCAGCAATGATAAAGCAACAAAAG ATCCATCTCGAGTTGGAGATTCTCAGAATCCTCTTCTGAGTGATGGAGATTTGTCCACTA TGATTGGCAAGGGTACCGGAGCTGCAAGTTTTGATGAATTTGGTAATTCTAAGTACCAGA ATCGGAGAACCATGAGTAGTTCTGATCGGGCCATGATGAACGCATTCAAGGAAATCACTA CCATGGCAGATAGAATCAACCTCCCTCGAAATATAGTTGATCGAACAAATAATTTATTCA AGCAAGTGTATGAACAGAAAAGCCTGAAGGGAAGAGCTAATGATGCCATAGCGTCTGCTT GTCTCTATATTGCCTGCAGACAAGAAGGAGTTCCTAGGACGTTTAAAGAAATATGTGCCG TATCACGAATTTCAAAGAAAGAAATTGGTCGATGTTTCAAACTTATTTTGAAAGCTTTAG AAACCAGTGTGGATTTGATCACAACTGGGGACTTCATGTCCAGGTTTTGTTCCAACCTCT GTCTCCCTAAACAAGTACAGATGGCAGCCACACACATAGCCCGCAAGGCTGTGGAGCTGG ACCTGGTGCCTGGAAGGAGCCCCATATCCGTGGCGGCCGCAGCCATTTACATGGCTTCCC AGGCCTCAGCGGAGAAGAGGACGCAGAAAGAAATTGGAGATATTGCTGGTGTTGCTGACG TCACAATCAGACAGTCCTACAGACTAATCTATCCTCGAGCCCCAGACCTGTTTCCTACAG ACTTCAAGTTCGACACCCCTGTGGACAAACTCCCACAGTTGTAAATTGAGGCGGCTCATG TCAGACTCCTGAGCACGGAGCTTCACCTGCTGTGCAGCTTGCGCGGTGCTGCTCGAGCCT TTGAGAAGGAAGAACAGACACGGTACGCATTCCGGGGCCTCGCAGCCATTGCTTTGCATT CTCTGTGTATATACTAGTGGAACATATTTAATGACTTCAATTTCTTATTGAATTTGCTTT CTTTTGTAGCAGTCTAGGAAACTATTTTGGAAGATATCTGAAATTATGTAATTCTTGAAT AAAACATTTTTCAAAATTAAAAAAAAAAAAAAAAAAATGTGTTCTATGTAATTTATAATT TATAATATAATTAAAAATAATGCATATTGCAGCTAGTAAAGCTGATAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTTTGCGGGCGTCCGTCGTCGTCGCCGGTCGGGAGCCGGAGGGGCCGTGAAGATGGCGT CGACCAGCCGTTTGGATGCTCTTCCAAGAGTCACATGTCCAAACCATCCAGATGCAATCT TAGTGGAAGACTACAGAGCTGGTGATATGATCTGTCCTGAATGTGGCCTGGTTGTAGGTG ACCGGGTTATCGATGTGGGATCTGAGTGGAGAACTTTCAGCAATGATAAAGCAACAAAAG ATCCATCTCGAGTTGGAGATTCTCAGAATCCTCTTCTGAGTGATGGAGATTTGTCCACTA TGATTGGCAAGGGTACCGGAGCTGCAAGTTTTGATGAATTTGGTAATTCTAAGTACCAGA ATCGGAGAACCATGAGTAGTTCTGATCGGGCCATGATGAACGCATTCAAGGAAATCACTA CCATGGCAGATAGAATCAACCTCCCTCGAAATATAGTTGATCGAACAAATAATTTATTCA AGCAAGTGTATGAACAGAAAAGCCTGAAGGGAAGAGCTAATGATGCCATAGCGTCTGCTT GTCTCTATATTGCCTGCAGACAAGAAGGAGTTCCTAGGACGTTTAAAGAAATATGTGCCG TATCACGAATTTCAAAGAAAGAAATTGGTCGATGTTTCAAACTTATTTTGAAAGCTTTAG AAACCAGTGTGGATTTGATCACAACTGGGGACTTCATGTCCAGGTTTTGTTCCAACCTCT GTCTCCCTAAACAAGTACAGATGGCAGCCACACACATAGCCCGCAAGGCTGTGGAGCTGG ACCTGGTGCCTGGAAGGAGCCCCATATCCGTGGCGGCCGCAGCCATTTACATGGCTTCCC AGGCCTCAGCGGAGAAGAGGACGCAGAAAGAAATTGGAGATATTGCTGGTGTTGCTGACG TCACAATCAGACAGTCCTACAGACTAATCTATCCTCGAGCCCCAGACCTGTTTCCTACAG ACTTCAAGTTCGACACCCCTGTGGACAAACTCCCACAGTTGTAAATTGAGGCGGCTCATG TCAGACTCCTGAGCACGGAGCTTCACCTGCTGTGCAGCTTGCGCGGTGCTGCTCGAGCCT TTGAGAAGGAAGAACAGACACGGTACGCATTCCGGGGCCTCGCAGCCATTGCTTTGCATT CTCTGTGTATATACTAGTGGAACATATTTAATGACTTCAATTTCTTATTGAATTTGCTTT CTTTTGTAGCAGTCTAGGAAACTATTTTGGAAGATATCTGAAATTATGTAATTCTTGAAT AAAACATTTTTCAAAATTAAAAAAAAAAAAAAAAAAATGTGTTCTATGTAATTTATAATT TATAATATAATTAAAAATAATGCATATTGCAGCTAGTAAAGCTGATAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 908-1026, - strand, RNAz p=0.755732 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 908-1026, - strand, RNAz p=0.755732 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 30-183, gnl|bosTau2|chr4 (2086805-2086652) | |
| 30-183, gnl|Mm7|chr8 (123352953-123353095) | |
| 70-179, gnl|bosTau2|chr3 (40185819-40185928) | |
| 70-179, gnl|canFam2|chr6 (62556826-62556674) | |
| 70-179, gnl|danRer3|chr2 (14018909-14019036) | |
| 70-179, gnl|dasNov1|scaffold_59846 (11618-11468) | |
| 70-179, gnl|echTel1|scaffold_216696 (10588-10698) | |
| 70-179, gnl|fr1|chrUn (45823285-45823388) | |
| 70-179, gnl|galGal2|chr8 (15491809-15491652) | |
| 70-179, gnl|hg17|chr1 (89064960-89065112) | |
| 70-179, gnl|Hg17|chr1 (89065072-89064963) | |
| 70-179, gnl|loxAfr1|scaffold_23711 (29142-28988) | |
| 70-179, gnl|mm7|chr3 (142664438-142664285) | |
| 70-179, gnl|Mm7|chr3 (142664324-142664433) | |
| 70-179, gnl|monDom2|scaffold_87 (5019750-5019592) | |
| 70-179, gnl|oryCun1|scaffold_149632 (189-338) | |
| 70-179, gnl|panTro1|chr1 (87867585-87867737) | |
| 70-179, gnl|rheMac2|chr1 (91614307-91614459) | |
| 70-179, gnl|rn3|chr2 (240870042-240869883) | |
| 70-179, gnl|tetNig1|chr15 (3581454-3581553) | |
| 310-459, gnl|bosTau2|chr3 (45598734-45598883) | |
| 310-459, gnl|canFam2|chr6 (62580497-62580327) | |
| 310-459, gnl|danRer3|chr2 (14015988-14016153) | |
| 310-459, gnl|echTel1|scaffold_318921 (5798-5628) | |
| 310-459, gnl|galGal2|chr8 (15505633-15505467) | |
| 310-459, gnl|hg17|chr1 (89037833-89038003) | |
| 310-459, gnl|Hg17|chr1 (89037992-89037843) | |
| 310-459, gnl|loxAfr1|scaffold_44888 (1044-874) | |
| 310-459, gnl|mm7|chr3 (142672790-142672620) | |
| 310-459, gnl|Mm7|chr3 (142672629-142672778) | |
| 310-459, gnl|monDom2|scaffold_87 (5058882-5058712) | |
| 310-459, gnl|oryCun1|scaffold_208366 (13239-13409) | |
| 310-459, gnl|panTro1|chr1 (87840802-87840972) | |
| 310-459, gnl|rheMac2|chr1 (91587369-91587538) | |
| 310-459, gnl|rn3|chr2 (240879020-240878850) | |
| 310-459, gnl|tetNig1|chr15 (3580186-3580348) | |
| 310-459, gnl|xenTro1|scaffold_538 (537232-537064) | |
| 869-1368, gnl|bosTau2|chr3 (45603168-45603677) | |
| 869-1368, gnl|Hg17|chr1 (89031052-89030557) | |
| 869-1368, gnl|Mm7|chr3 (142676133-142676628) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 30-183, gnl|bosTau2|chr4 (2086805-2086652) | |
| 30-183, gnl|Mm7|chr8 (123352953-123353095) | |
| 70-179, gnl|bosTau2|chr3 (40185819-40185928) | |
| 70-179, gnl|canFam2|chr6 (62556826-62556674) | |
| 70-179, gnl|danRer3|chr2 (14018909-14019036) | |
| 70-179, gnl|dasNov1|scaffold_59846 (11618-11468) | |
| 70-179, gnl|echTel1|scaffold_216696 (10588-10698) | |
| 70-179, gnl|fr1|chrUn (45823285-45823388) | |
| 70-179, gnl|galGal2|chr8 (15491809-15491652) | |
| 70-179, gnl|hg17|chr1 (89064960-89065112) | |
| 70-179, gnl|Hg17|chr1 (89065072-89064963) | |
| 70-179, gnl|loxAfr1|scaffold_23711 (29142-28988) | |
| 70-179, gnl|mm7|chr3 (142664438-142664285) | |
| 70-179, gnl|Mm7|chr3 (142664324-142664433) | |
| 70-179, gnl|monDom2|scaffold_87 (5019750-5019592) | |
| 70-179, gnl|oryCun1|scaffold_149632 (189-338) | |
| 70-179, gnl|panTro1|chr1 (87867585-87867737) | |
| 70-179, gnl|rheMac2|chr1 (91614307-91614459) | |
| 70-179, gnl|rn3|chr2 (240870042-240869883) | |
| 70-179, gnl|tetNig1|chr15 (3581454-3581553) | |
| 310-459, gnl|bosTau2|chr3 (45598734-45598883) | |
| 310-459, gnl|canFam2|chr6 (62580497-62580327) | |
| 310-459, gnl|danRer3|chr2 (14015988-14016153) | |
| 310-459, gnl|echTel1|scaffold_318921 (5798-5628) | |
| 310-459, gnl|galGal2|chr8 (15505633-15505467) | |
| 310-459, gnl|hg17|chr1 (89037833-89038003) | |
| 310-459, gnl|Hg17|chr1 (89037992-89037843) | |
| 310-459, gnl|loxAfr1|scaffold_44888 (1044-874) | |
| 310-459, gnl|mm7|chr3 (142672790-142672620) | |
| 310-459, gnl|Mm7|chr3 (142672629-142672778) | |
| 310-459, gnl|monDom2|scaffold_87 (5058882-5058712) | |
| 310-459, gnl|oryCun1|scaffold_208366 (13239-13409) | |
| 310-459, gnl|panTro1|chr1 (87840802-87840972) | |
| 310-459, gnl|rheMac2|chr1 (91587369-91587538) | |
| 310-459, gnl|rn3|chr2 (240879020-240878850) | |
| 310-459, gnl|tetNig1|chr15 (3580186-3580348) | |
| 310-459, gnl|xenTro1|scaffold_538 (537232-537064) | |
| 869-1368, gnl|bosTau2|chr3 (45603168-45603677) | |
| 869-1368, gnl|Hg17|chr1 (89031052-89030557) | |
| 869-1368, gnl|Mm7|chr3 (142676133-142676628) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| cbe (0.478469) | |
| csk (0.422238) | |
| cmu (0.372787) | |
| mga (0.32041) | |
| sme (0.305437) | |
| cte (0.29274) | |
| thg (0.253582) | |
| aor (0.195274) | |
| nep (0.183925) | |
| ton (0.1755) | |
| sin (0.174948) | |
| cje (0.165235) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| fat (0.147427) | |
| nca (0.136874) | |
| sug (0.127291) | |
| eep (0.122564) | |
| ecc (0.115035) | |
| spc (0.113366) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (0.478469) | |
| csk (0.422238) | |
| cmu (0.372787) | |
| mga (0.32041) | |
| sme (0.305437) | |
| cte (0.29274) | |
| thg (0.253582) | |
| aor (0.195274) | |
| nep (0.183925) | |
| ton (0.1755) | |
| sin (0.174948) | |
| cje (0.165235) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| fat (0.147427) | |
| nca (0.136874) | |
| sug (0.127291) | |
| eep (0.122564) | |
| ecc (0.115035) | |
| spc (0.113366) |