Non-Coding RNA Search

Ss1.1-Pig4-TMW8018K20.5

Sequence:


               
               CGGCCGGGCGGCATGGCGGGGCTGGAGCTGCTGTCGGACCAGGGCTACCGTGTGGACGGG
CGGCGCGCCCGGGAGCTGCGCAAGATCCAGGCGCGGATGGGCGTGTTTGCGCAGGCCGAC
GGCTCGGCCTACATCGAGCAGGGCAACACCAAGGCGCTAGCGGTGGTCTACGGGCCTCAC
GAGATCCGGGGCTCGCGGTCACGAGCCCTGCCGGACAGGGCCTTGGTGAACTGTCAGTAC
AGTTCTGCGACCTTCAGCACAGGTGAGCGCAAGCGGCGGCCACATGGGGACCGAAAGTCC
TGCGAGATGGGCCTGCAGCTGCGTCAAGCCTTTGAGGCAGCCATCCTTACACAGCTGCAT
CCTCGCTCCCAGATTGATATCTACGTGCAGGTGCTGCAGGCAGATGGTGGGATCTATGCG
GCTTGTGTGAACGTGGCCACGCTGGCAGTGCTGGACGCCGGGATACCCATGCGGGACTTT
GTATGTGCCTGCTCAGCTGGCTTTGTGGATGGGACAGCCCTGGCAGACCTCAGCCATGTG
GAGGAAGCAGCTGGTGGCCCCCAGCTGGCCCTGGCCCTGCTGCCAGCCTCAGGCCAGATC
GCACTGCTGGAGATGGATGCAAGGCTTCATGAGGACCACCTGGAGCAGGTGCTAGAGGCC
GCTGCCCAGGCCGCCCGAGATGTGCACACCGTACTGGACCGTGTGGTCCGGCAACACGTA
CAAGAGGCCTCGATCTTGCTGGGGGACTGAGTACACGGCCGCCCAGGCCCAGAATAAAAC
TCACACGCGCTCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCCGGGCGGCATGGCGGGGCTGGAGCTGCTGTCGGACCAGGGCTACCGTGTGGACGGG
CGGCGCGCCCGGGAGCTGCGCAAGATCCAGGCGCGGATGGGCGTGTTTGCGCAGGCCGAC
GGCTCGGCCTACATCGAGCAGGGCAACACCAAGGCGCTAGCGGTGGTCTACGGGCCTCAC
GAGATCCGGGGCTCGCGGTCACGAGCCCTGCCGGACAGGGCCTTGGTGAACTGTCAGTAC
AGTTCTGCGACCTTCAGCACAGGTGAGCGCAAGCGGCGGCCACATGGGGACCGAAAGTCC
TGCGAGATGGGCCTGCAGCTGCGTCAAGCCTTTGAGGCAGCCATCCTTACACAGCTGCAT
CCTCGCTCCCAGATTGATATCTACGTGCAGGTGCTGCAGGCAGATGGTGGGATCTATGCG
GCTTGTGTGAACGTGGCCACGCTGGCAGTGCTGGACGCCGGGATACCCATGCGGGACTTT
GTATGTGCCTGCTCAGCTGGCTTTGTGGATGGGACAGCCCTGGCAGACCTCAGCCATGTG
GAGGAAGCAGCTGGTGGCCCCCAGCTGGCCCTGGCCCTGCTGCCAGCCTCAGGCCAGATC
GCACTGCTGGAGATGGATGCAAGGCTTCATGAGGACCACCTGGAGCAGGTGCTAGAGGCC
GCTGCCCAGGCCGCCCGAGATGTGCACACCGTACTGGACCGTGTGGTCCGGCAACACGTA
CAAGAGGCCTCGATCTTGCTGGGGGACTGAGTACACGGCCGCCCAGGCCCAGAATAAAAC
TCACACGCGCTCAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q7YRA3_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7YRA3_BOVIN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               545-664, + strand, RNAz p=0.942883

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               545-664, + strand, RNAz p=0.942883

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-197, gnl|bosTau2|chr14 (159465-159268)
               

               
               1-197, gnl|Hg17|chr8 (145205608-145205805)
               

               
               1-197, gnl|Mm7|chr15 (76410035-76410230)
               


               
               386-783, gnl|bosTau2|chr14 (158283-157886)
               

               
               386-783, gnl|canFam2|chr13 (40606523-40606894)
               

               
               386-783, gnl|danRer3|chrNA (33150777-33150409)
               

               
               386-783, gnl|dasNov1|scaffold_85813 (505-135)
               

               
               386-783, gnl|fr1|chrUn (241468321-241468684)
               

               
               386-783, gnl|hg17|chr8 (145207125-145207496)
               

               
               386-783, gnl|Hg17|chr8 (145207128-145207535)
               

               
               386-783, gnl|mm7|chr15 (76411902-76412271)
               

               
               386-783, gnl|Mm7|chr15 (76411904-76412312)
               

               
               386-783, gnl|monDom2|scaffold_79 (2300670-2301034)
               

               
               386-783, gnl|panTro1|chr7 (148514456-148514827)
               

               
               386-783, gnl|rheMac2|chr8 (146693167-146693538)
               

               
               386-783, gnl|rn3|chr7 (114411189-114411557)
               

               
               386-783, gnl|tetNig1|chr15_random (373130-372784)
               

               
               386-783, gnl|xenTro1|scaffold_847 (146691-147064)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-197, gnl|bosTau2|chr14 (159465-159268)
               

               
               1-197, gnl|Hg17|chr8 (145205608-145205805)
               

               
               1-197, gnl|Mm7|chr15 (76410035-76410230)
               


               
               386-783, gnl|bosTau2|chr14 (158283-157886)
               

               
               386-783, gnl|canFam2|chr13 (40606523-40606894)
               

               
               386-783, gnl|danRer3|chrNA (33150777-33150409)
               

               
               386-783, gnl|dasNov1|scaffold_85813 (505-135)
               

               
               386-783, gnl|fr1|chrUn (241468321-241468684)
               

               
               386-783, gnl|hg17|chr8 (145207125-145207496)
               

               
               386-783, gnl|Hg17|chr8 (145207128-145207535)
               

               
               386-783, gnl|mm7|chr15 (76411902-76412271)
               

               
               386-783, gnl|Mm7|chr15 (76411904-76412312)
               

               
               386-783, gnl|monDom2|scaffold_79 (2300670-2301034)
               

               
               386-783, gnl|panTro1|chr7 (148514456-148514827)
               

               
               386-783, gnl|rheMac2|chr8 (146693167-146693538)
               

               
               386-783, gnl|rn3|chr7 (114411189-114411557)
               

               
               386-783, gnl|tetNig1|chr15_random (373130-372784)
               

               
               386-783, gnl|xenTro1|scaffold_847 (146691-147064)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               duo (0.345602)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               ute (0.132784)
               

               
               ese (0.126502)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.345602)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               ute (0.132784)
               

               
               ese (0.126502)

	1-197, gnl\|bosTau2\|chr14 (159465-159268)
	1-197, gnl\|Hg17\|chr8 (145205608-145205805)
	1-197, gnl\|Mm7\|chr15 (76410035-76410230)

	386-783, gnl\|bosTau2\|chr14 (158283-157886)
	386-783, gnl\|canFam2\|chr13 (40606523-40606894)
	386-783, gnl\|danRer3\|chrNA (33150777-33150409)
	386-783, gnl\|dasNov1\|scaffold_85813 (505-135)
	386-783, gnl\|fr1\|chrUn (241468321-241468684)
	386-783, gnl\|hg17\|chr8 (145207125-145207496)
	386-783, gnl\|Hg17\|chr8 (145207128-145207535)
	386-783, gnl\|mm7\|chr15 (76411902-76412271)
	386-783, gnl\|Mm7\|chr15 (76411904-76412312)
	386-783, gnl\|monDom2\|scaffold_79 (2300670-2301034)
	386-783, gnl\|panTro1\|chr7 (148514456-148514827)
	386-783, gnl\|rheMac2\|chr8 (146693167-146693538)
	386-783, gnl\|rn3\|chr7 (114411189-114411557)
	386-783, gnl\|tetNig1\|chr15_random (373130-372784)
	386-783, gnl\|xenTro1\|scaffold_847 (146691-147064)

	duo (0.345602)
	nlu (0.191681)
	mcp (0.170648)
	nco (0.161734)
	ute (0.132784)
	ese (0.126502)