Non-Coding RNA Search

Ss1.1-Pig4-TMW8018K23.3

Sequence:


               
               GTGACGGCCGTGGGTCGCATCATCGCCCCCCTTCTGTCCGGGGTGGCCCAGGAGCTCAGC
CCCTGCGGCCCTCCTGGTCTGGGTGCTGCGTTAGCCTTAGTGGCTGTCGTCATCATGTCA
CTACACAGACCTCACTCTGGTGGTGACAACAGGGACGCTAAGTTAAAAAGAGAGTAGCTG
GATCTGGATAGGACGAAGGGGCGAGACCAGCGGTCTGTGAACGGCAGCACAAGTGCTGTG
GAAAGGGTCAGAAAGTTCTTTGCAACAGGCGGTGCTCCGCCGGGCGTCCATCAGGCCTGT
GGGAGGAGCAGAATCCACAGTACACAGGAGATGCGAGCTGGGCTTTGCCGGAGGGGGAGG
TGTGCAGTGTTTTCCTAAGACTCTCTTCTCCTGGCCCAGCGAGGTTAGCATTTTCAAGGG
GACGAAAAGCTGCCCAGGGCAAGACAGGGAGGTGATGGGGAGGCTAACAGAACGTTTGTG
AAAAGGAGGTGACTGCAGGGATGACCCTGCTGAGTAAAAACAGGGTTACCGGTGAATAAC
ACTCTTTTCAGCTGAGCATAGGTGTCAGGTTCAGTTCCACTGCTGAAAGGATCCTCTTCT
GCTGTCCAAGTCCCTGAGATTAAAGAAGCTGCTTTATTAAAACCAGCCTGTCGCTTTCTC
AAGTCATAACGAGGTTCTGTCCAGGGAGCTGGTGAGAACCCAGATGCCTGGCCTCATCCT
GGGAGACAGAGCCTGTGAGCATTGGCGAGGTGCAGAAACCTGGTGCTTTTAATGAGCTTC
TCATGGCGGTAGAAAAAGGATCATCCTGAGACCTCCCGGTTTTGATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGACGGCCGTGGGTCGCATCATCGCCCCCCTTCTGTCCGGGGTGGCCCAGGAGCTCAGC
CCCTGCGGCCCTCCTGGTCTGGGTGCTGCGTTAGCCTTAGTGGCTGTCGTCATCATGTCA
CTACACAGACCTCACTCTGGTGGTGACAACAGGGACGCTAAGTTAAAAAGAGAGTAGCTG
GATCTGGATAGGACGAAGGGGCGAGACCAGCGGTCTGTGAACGGCAGCACAAGTGCTGTG
GAAAGGGTCAGAAAGTTCTTTGCAACAGGCGGTGCTCCGCCGGGCGTCCATCAGGCCTGT
GGGAGGAGCAGAATCCACAGTACACAGGAGATGCGAGCTGGGCTTTGCCGGAGGGGGAGG
TGTGCAGTGTTTTCCTAAGACTCTCTTCTCCTGGCCCAGCGAGGTTAGCATTTTCAAGGG
GACGAAAAGCTGCCCAGGGCAAGACAGGGAGGTGATGGGGAGGCTAACAGAACGTTTGTG
AAAAGGAGGTGACTGCAGGGATGACCCTGCTGAGTAAAAACAGGGTTACCGGTGAATAAC
ACTCTTTTCAGCTGAGCATAGGTGTCAGGTTCAGTTCCACTGCTGAAAGGATCCTCTTCT
GCTGTCCAAGTCCCTGAGATTAAAGAAGCTGCTTTATTAAAACCAGCCTGTCGCTTTCTC
AAGTCATAACGAGGTTCTGTCCAGGGAGCTGGTGAGAACCCAGATGCCTGGCCTCATCCT
GGGAGACAGAGCCTGTGAGCATTGGCGAGGTGCAGAAACCTGGTGCTTTTAATGAGCTTC
TCATGGCGGTAGAAAAAGGATCATCCTGAGACCTCCCGGTTTTGATTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-120, + strand, RNAz p=0.709711

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-120, + strand, RNAz p=0.709711

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_032718, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_032718, +

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-422, gnl|bosTau2|chr11 (4846771-4846315)
               

               
               1-422, gnl|Hg17|chr2 (102793570-102793066)
               


               
               491-828, gnl|bosTau2|chr11 (4846269-4845935)
               

               
               491-828, gnl|Hg17|chr2 (102793020-102792707)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-422, gnl|bosTau2|chr11 (4846771-4846315)
               

               
               1-422, gnl|Hg17|chr2 (102793570-102793066)
               


               
               491-828, gnl|bosTau2|chr11 (4846269-4845935)
               

               
               491-828, gnl|Hg17|chr2 (102793020-102792707)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cmu (0.186393)
               

               
               pla (0.133672)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               pla (0.133672)
               

               
               jej (0.0989218)

	1-422, gnl\|bosTau2\|chr11 (4846771-4846315)
	1-422, gnl\|Hg17\|chr2 (102793570-102793066)

	491-828, gnl\|bosTau2\|chr11 (4846269-4845935)
	491-828, gnl\|Hg17\|chr2 (102793020-102792707)