Non-Coding RNA Search

Ss1.1-Pig4-TMW8018M06.3

Sequence:


               
               GTTTTAAATGTAAGGTGAGTGGCATTTTAATATCTTCTAAGAAGTGATCCTAGGAACATG
CAGAGATTGATATCTGAAACCTTATTTTTCTTTCTTGATAATCAAGCTGTATTAATAATT
AACATTACCAAAAATGAACTTTTCTAATTTTTACCAAAAAAAAACAACCTTGCTATCTTT
AGAAAGTCAAGTCCATAGCAACTTATGAACTCAACTCAAAAATAGTAATTAAGAACAATC
ACGTGATTCTGGCTGTTAAAACAGTTCATTTCTAGTAGAATTAACATACTTGACCATTTA
TGATTCTGCTAAATTATTATAGAATGTAAGGACCTTCAGTCCCTACTCTTTCTCATTTTT
GTTGAAATGTCTTCATATTGGCTATATTTACTTATGCCGTAGCAGAAATACCCTTCCAAC
TTAAATTTTTAGTGGATTTTGTTTTTGCTAATACAACAGTGAAACATTATAATGGCATTT
CTGATTTTTTTAAATGTATTTAAATGCATACCTTTCCCCACACTGCTTAGTGACAGAACT
GTCCTTTTGGAAGTAAGAAGACATTTTCAATCTGACCTGTTACATTTGATTTATTGATAA
CAAAGTATCAACATTTCTCAAAATTACTAATAAATTGGATTCACAAAAGAATGTCTTACA
TATTACTGACATTTATGTGAATATTCTTTATACTGGTGTAAATGTTTCATGCAATTTAAT
AACATTTTTAAAAGATGTATGTATCTAATTTTCCTTTAGAAAATATTATATTTTTATTTG
TATTTTTTACATTTAAAGTTCATCTCTATGTGCAGCTATTTTTATATTGCCAAACAATCA
CATAAATGAAAAATAAGAGAAAAATGCAAAAAAAGTTTTAGCAAGCATAACACTGCATAT
TTTTCTTAATGTTTTGTGGGCCAGTCTCATGTGATTGATTATTCTAAGAATGTGTTGTGT
CTTATCACTGTAAATATGGCACAAACCTGTTTTTCTTGGTAGTGTAAATAATTGAAAAAT
TGAATTCTCCGTTTGATTTCTCATTTCGATTTCATTATAATTTCTCCAGCTGACATTGCC
AAATCAAAGACCAAAAGACGCATGTGGTTTTTGATTTGCAGCTTGGAGATAATTGCATTG
TGCTCAGTTTCTAATTTGTTTTTATTTGCTTTTTTAACTTGCTTTCAGGGTTCCTAGTTT
GTGAGAAGTTGATCTTCAGAATTATTTTTACACTATTTATGACTTATTTTCATAATGTAA
AAAGTGTGTAATTATTACAATATTAATCCAAACAATGGTAATGAATTGTATTGTTATAAA
GCTTTAATGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTAAATGTAAGGTGAGTGGCATTTTAATATCTTCTAAGAAGTGATCCTAGGAACATG
CAGAGATTGATATCTGAAACCTTATTTTTCTTTCTTGATAATCAAGCTGTATTAATAATT
AACATTACCAAAAATGAACTTTTCTAATTTTTACCAAAAAAAAACAACCTTGCTATCTTT
AGAAAGTCAAGTCCATAGCAACTTATGAACTCAACTCAAAAATAGTAATTAAGAACAATC
ACGTGATTCTGGCTGTTAAAACAGTTCATTTCTAGTAGAATTAACATACTTGACCATTTA
TGATTCTGCTAAATTATTATAGAATGTAAGGACCTTCAGTCCCTACTCTTTCTCATTTTT
GTTGAAATGTCTTCATATTGGCTATATTTACTTATGCCGTAGCAGAAATACCCTTCCAAC
TTAAATTTTTAGTGGATTTTGTTTTTGCTAATACAACAGTGAAACATTATAATGGCATTT
CTGATTTTTTTAAATGTATTTAAATGCATACCTTTCCCCACACTGCTTAGTGACAGAACT
GTCCTTTTGGAAGTAAGAAGACATTTTCAATCTGACCTGTTACATTTGATTTATTGATAA
CAAAGTATCAACATTTCTCAAAATTACTAATAAATTGGATTCACAAAAGAATGTCTTACA
TATTACTGACATTTATGTGAATATTCTTTATACTGGTGTAAATGTTTCATGCAATTTAAT
AACATTTTTAAAAGATGTATGTATCTAATTTTCCTTTAGAAAATATTATATTTTTATTTG
TATTTTTTACATTTAAAGTTCATCTCTATGTGCAGCTATTTTTATATTGCCAAACAATCA
CATAAATGAAAAATAAGAGAAAAATGCAAAAAAAGTTTTAGCAAGCATAACACTGCATAT
TTTTCTTAATGTTTTGTGGGCCAGTCTCATGTGATTGATTATTCTAAGAATGTGTTGTGT
CTTATCACTGTAAATATGGCACAAACCTGTTTTTCTTGGTAGTGTAAATAATTGAAAAAT
TGAATTCTCCGTTTGATTTCTCATTTCGATTTCATTATAATTTCTCCAGCTGACATTGCC
AAATCAAAGACCAAAAGACGCATGTGGTTTTTGATTTGCAGCTTGGAGATAATTGCATTG
TGCTCAGTTTCTAATTTGTTTTTATTTGCTTTTTTAACTTGCTTTCAGGGTTCCTAGTTT
GTGAGAAGTTGATCTTCAGAATTATTTTTACACTATTTATGACTTATTTTCATAATGTAA
AAAGTGTGTAATTATTACAATATTAATCCAAACAATGGTAATGAATTGTATTGTTATAAA
GCTTTAATGATG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1012-1129, - strand, RNAz p=0.942412

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1012-1129, - strand, RNAz p=0.942412

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               11-624, gnl|bosTau2|chr6 (5607247-5607869)
               

               
               11-624, gnl|Hg17|chr4 (110088859-110088228)
               

               
               11-624, gnl|Mm7|chr3 (130435091-130435637)
               


               
               630-1332, gnl|bosTau2|chr6 (5607900-5608597)
               

               
               630-1332, gnl|Hg17|chr4 (110088197-110087495)
               

               
               630-1332, gnl|Mm7|chr3 (130435667-130436365)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-624, gnl|bosTau2|chr6 (5607247-5607869)
               

               
               11-624, gnl|Hg17|chr4 (110088859-110088228)
               

               
               11-624, gnl|Mm7|chr3 (130435091-130435637)
               


               
               630-1332, gnl|bosTau2|chr6 (5607900-5608597)
               

               
               630-1332, gnl|Hg17|chr4 (110088197-110087495)
               

               
               630-1332, gnl|Mm7|chr3 (130435667-130436365)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fce (0.271592)
               

               
               eru (0.120048)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               eru (0.120048)

	11-624, gnl\|bosTau2\|chr6 (5607247-5607869)
	11-624, gnl\|Hg17\|chr4 (110088859-110088228)
	11-624, gnl\|Mm7\|chr3 (130435091-130435637)

	630-1332, gnl\|bosTau2\|chr6 (5607900-5608597)
	630-1332, gnl\|Hg17\|chr4 (110088197-110087495)
	630-1332, gnl\|Mm7\|chr3 (130435667-130436365)