Non-Coding RNA Search

Ss1.1-Pig4-TMW8018M08.5

Sequence:


               
               GCTGGGACAAGCAGTTAATTGTCTGATGTTTGCTTTCCCATTCCTCCTGTGGGTAAGAAA
GGGCCTGATATGTTTCCACAGAGCTCATCAGCATTCTCCACCTCAGCAGGAAGGAAGCAT
GGCTGGGTTAAAAATCAAACGTTTAATCAACTGTGTGGGGTTGGGATGGGGTGAATCTGT
GGGAGCACAAAACCTGGGCCCGTGGTGGCGGCTGGACCCCCAGCAGTTTGGGGCCTGGCA
CAAGGAGCTTTGGGTTTTTGGGTTGGTTTGTTTTTGCTAAGATGCATTATAGAACTCTGA
AAAACAATTTTCTCACTGTGGCCCAAACGGTGACATCTGAGCCTTCCCTTGGGGCTCTCA
CTAAAAGGAGCTCTCCTGATAGCTGTCAGCATTCACCATCATTGTGGGTCTGTTCTTCTT
CCAAATTAGCAGCCTGTAGGGGACATGAAGATTAACTTTAAAGGGAAGTTTTGAGCTGTT
AAGACTGCAAACCAACTCTGCATTTATGTTGCCCAGGCACTCATGACATCCATGCTCTGA
TCCTCGGAAGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGGGACAAGCAGTTAATTGTCTGATGTTTGCTTTCCCATTCCTCCTGTGGGTAAGAAA
GGGCCTGATATGTTTCCACAGAGCTCATCAGCATTCTCCACCTCAGCAGGAAGGAAGCAT
GGCTGGGTTAAAAATCAAACGTTTAATCAACTGTGTGGGGTTGGGATGGGGTGAATCTGT
GGGAGCACAAAACCTGGGCCCGTGGTGGCGGCTGGACCCCCAGCAGTTTGGGGCCTGGCA
CAAGGAGCTTTGGGTTTTTGGGTTGGTTTGTTTTTGCTAAGATGCATTATAGAACTCTGA
AAAACAATTTTCTCACTGTGGCCCAAACGGTGACATCTGAGCCTTCCCTTGGGGCTCTCA
CTAAAAGGAGCTCTCCTGATAGCTGTCAGCATTCACCATCATTGTGGGTCTGTTCTTCTT
CCAAATTAGCAGCCTGTAGGGGACATGAAGATTAACTTTAAAGGGAAGTTTTGAGCTGTT
AAGACTGCAAACCAACTCTGCATTTATGTTGCCCAGGCACTCATGACATCCATGCTCTGA
TCCTCGGAAGGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-116, + strand, RNAz p=0.833172

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-116, + strand, RNAz p=0.833172

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-473, gnl|bosTau2|chr7 (8591215-8591681)
               

               
               1-473, gnl|Hg17|chr19 (12870765-12871224)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-473, gnl|bosTau2|chr7 (8591215-8591681)
               

               
               1-473, gnl|Hg17|chr19 (12870765-12871224)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	1-473, gnl\|bosTau2\|chr7 (8591215-8591681)
	1-473, gnl\|Hg17\|chr19 (12870765-12871224)