Ss1.1-Pig4-TMW8018M16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGGAGACCAAAAAGGGTGCAGATTCTCTAGAGGATTTCTTATACCATGAAGGATATGCT TGTACCAGTATCCATGGAGACCGATCTCAGAGAGATAGAGAAGAAGCCCTTCACCAGTTC CGCTCAGGAAAAAGCCCAATTCTAGTGGCTACAGCAGTAGCAGCAAGAGGACTGGACATT TCAAATGTGAAGCATGTTATCAATTTTGACTTGCCAAGTGATATTGAAGAATACGTACAT CGCATTGGCCGTACAGGACGTGTAGGAAACCTTGGCCTTGCCACCTCATTCTTTAATGAG AGGAACGCAAATATTACCAAGGATTTGTTGGATCTTCTTGTTGAAGCTAAACAAGAAGTG CCATCTTGGTTAGAAAACATGGCTTATGAACACCACTACAAGGGTAGCAGTCGTGGACGT TCCAAAAGCAGTAGGTTCAGTGGAGGATTCGGTGCCAGAGACTATCGACAAAGTAGTGGT GCCAGCAGTTCCAGCTTCAGCAGCAGCCGCGCCAGCAGCAGTCGCAGTGGTGGAGGCGGC CATGGCAGCAGCAGAGGATTTGGCGGAGGTGGCTATGGAGGCTTTTACAACAGCGATGGA TATGGAGGAAATTATAACTCCCAGGGGGTTGACTGGTGGGGTAACTGAACCTGCTTTGCA GTAGGTCACCCTGCCAAACAAGCTAATATGGAAACCACATGTAACTTAGCCAGACTATAC CTTGTGTAGCTTCAAGAACTCGCAGTACATTACCAGCTGTGATTCTCCACTGAAATTTTT TTTTTAAGGGAGCTCAAGGTCACATGAAGAGATGAAAGGAACAATCAGCAGCCCTGTTCA GAAGGTGGTTTGAAGACTTCATTGCTGTAGTTTGGATTAACTCCCCTCCCGCCAACCCCC ATCCCAAACTGCATTTATAATTTTGTGACTGAGGATCATTTGTTTGTTAATGTACTGTGC CTTTAACTTTAGACAACTTTTTATTTTGATGTCCTGTTGGCTCAGTAATGCTCAAGATAT CAATTGTTTTGACAAAATAAATTTACTGAACTTGGGCTAAAATCAAACCTTGGCACACAG GTGTGATACAACTTAACAGGAATCATCGATTCATCCATAAATACTATAAGGAAAAAACTT ATGCGGTAGCCTGCATTAGGGCTTTTTGATACTTGCAGATTGGGGGAAAACAAACAACAA ACGTCTTGAAGTATATTAATGGAATTAGTTTCTAATGTGGCAAACTGTATTAAGTTAAAG TTCTGATTTGCTCACTCTATCCTGGATAGGTATTTAGAACCTGATAGTCTTTAAACAAGC CATTCCAGTCATGATGAGGTGATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGGAGACCAAAAAGGGTGCAGATTCTCTAGAGGATTTCTTATACCATGAAGGATATGCT TGTACCAGTATCCATGGAGACCGATCTCAGAGAGATAGAGAAGAAGCCCTTCACCAGTTC CGCTCAGGAAAAAGCCCAATTCTAGTGGCTACAGCAGTAGCAGCAAGAGGACTGGACATT TCAAATGTGAAGCATGTTATCAATTTTGACTTGCCAAGTGATATTGAAGAATACGTACAT CGCATTGGCCGTACAGGACGTGTAGGAAACCTTGGCCTTGCCACCTCATTCTTTAATGAG AGGAACGCAAATATTACCAAGGATTTGTTGGATCTTCTTGTTGAAGCTAAACAAGAAGTG CCATCTTGGTTAGAAAACATGGCTTATGAACACCACTACAAGGGTAGCAGTCGTGGACGT TCCAAAAGCAGTAGGTTCAGTGGAGGATTCGGTGCCAGAGACTATCGACAAAGTAGTGGT GCCAGCAGTTCCAGCTTCAGCAGCAGCCGCGCCAGCAGCAGTCGCAGTGGTGGAGGCGGC CATGGCAGCAGCAGAGGATTTGGCGGAGGTGGCTATGGAGGCTTTTACAACAGCGATGGA TATGGAGGAAATTATAACTCCCAGGGGGTTGACTGGTGGGGTAACTGAACCTGCTTTGCA GTAGGTCACCCTGCCAAACAAGCTAATATGGAAACCACATGTAACTTAGCCAGACTATAC CTTGTGTAGCTTCAAGAACTCGCAGTACATTACCAGCTGTGATTCTCCACTGAAATTTTT TTTTTAAGGGAGCTCAAGGTCACATGAAGAGATGAAAGGAACAATCAGCAGCCCTGTTCA GAAGGTGGTTTGAAGACTTCATTGCTGTAGTTTGGATTAACTCCCCTCCCGCCAACCCCC ATCCCAAACTGCATTTATAATTTTGTGACTGAGGATCATTTGTTTGTTAATGTACTGTGC CTTTAACTTTAGACAACTTTTTATTTTGATGTCCTGTTGGCTCAGTAATGCTCAAGATAT CAATTGTTTTGACAAAATAAATTTACTGAACTTGGGCTAAAATCAAACCTTGGCACACAG GTGTGATACAACTTAACAGGAATCATCGATTCATCCATAAATACTATAAGGAAAAAACTT ATGCGGTAGCCTGCATTAGGGCTTTTTGATACTTGCAGATTGGGGGAAAACAAACAACAA ACGTCTTGAAGTATATTAATGGAATTAGTTTCTAATGTGGCAAACTGTATTAAGTTAAAG TTCTGATTTGCTCACTCTATCCTGGATAGGTATTTAGAACCTGATAGTCTTTAAACAAGC CATTCCAGTCATGATGAGGTGATG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 1-159, gnl|bosTau2|chrX (28793247-28793089) | |
| 1-159, gnl|canFam2|chrX (35720204-35720385) | |
| 1-159, gnl|canFam2|chrX (35720214-35720399) | |
| 1-159, gnl|canFam2|chrX (35720214-35720490) | |
| 1-159, gnl|danRer3|chr3 (5187958-5187783) | |
| 1-159, gnl|danRer3|chr3 (5187953-5187769) | |
| 1-159, gnl|danRer3|chr3 (5187954-5187760) | |
| 1-159, gnl|dasNov1|scaffold_103535 (2147-2334) | |
| 1-159, gnl|dasNov1|scaffold_28058 (5555-5378) | |
| 1-159, gnl|dasNov1|scaffold_28058 (5545-5377) | |
| 1-159, gnl|echTel1|scaffold_228724 (2461-2281) | |
| 1-159, gnl|echTel1|scaffold_228724 (2452-2267) | |
| 1-159, gnl|echTel1|scaffold_228724 (2452-2177) | |
| 1-159, gnl|fr1|chrUn (229905183-229905008) | |
| 1-159, gnl|fr1|chrUn (229905179-229904994) | |
| 1-159, gnl|fr1|chrUn (229905179-229904993) | |
| 1-159, gnl|galGal2|chr1 (105731979-105731797) | |
| 1-159, gnl|galGal2|chr1 (105731968-105731783) | |
| 1-159, gnl|galGal2|chr1 (105731968-105731690) | |
| 1-159, gnl|hg17|chr4 (104852169-104852356) | |
| 1-159, gnl|hg17|chrX (40961733-40961918) | |
| 1-159, gnl|Hg17|chrX (40961762-40961920) | |
| 1-159, gnl|hg17|chrY (13466297-13466472) | |
| 1-159, gnl|loxAfr1|scaffold_6969 (4791-4608) | |
| 1-159, gnl|loxAfr1|scaffold_6969 (4779-4594) | |
| 1-159, gnl|loxAfr1|scaffold_6969 (4779-4494) | |
| 1-159, gnl|mm7|chrX (11723317-11723497) | |
| 1-159, gnl|mm7|chrX (11723326-11723511) | |
| 1-159, gnl|mm7|chrX (11723326-11723599) | |
| 1-159, gnl|Mm7|chrX (11723355-11723513) | |
| 1-159, gnl|monDom2|scaffold_29 (22346102-22345907) | |
| 1-159, gnl|monDom2|scaffold_29 (22346078-22345893) | |
| 1-159, gnl|monDom2|scaffold_29 (22346077-22345794) | |
| 1-159, gnl|oryCun1|scaffold_213972 (26759-26939) | |
| 1-159, gnl|oryCun1|scaffold_213972 (26768-26953) | |
| 1-159, gnl|oryCun1|scaffold_213972 (26768-27050) | |
| 1-159, gnl|panTro1|chr3 (121238695-121238882) | |
| 1-159, gnl|panTro1|chrX (42257357-42257542) | |
| 1-159, gnl|panTro1|chrY (14028162-14028337) | |
| 1-159, gnl|rheMac2|chr5 (96570516-96570704) | |
| 1-159, gnl|rheMac2|chrX (39115186-39115367) | |
| 1-159, gnl|rheMac2|chrX (39115196-39115381) | |
| 1-159, gnl|rn3|chrX (21552416-21552236) | |
| 1-159, gnl|rn3|chrX (21552407-21552222) | |
| 1-159, gnl|rn3|chrX (21552407-21552131) | |
| 1-159, gnl|tetNig1|chr2 (6499035-6498850) | |
| 1-159, gnl|tetNig1|chr2 (6499034-6498849) | |
| 1-159, gnl|tetNig1|chrUn_random (129655572-129655397) | |
| 1-159, gnl|xenTro1|scaffold_16 (943537-943361) | |
| 1-159, gnl|xenTro1|scaffold_16 (943530-943347) | |
| 1-159, gnl|xenTro1|scaffold_16 (943532-943345) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-159, gnl|bosTau2|chrX (28793247-28793089) | |
| 1-159, gnl|canFam2|chrX (35720204-35720385) | |
| 1-159, gnl|canFam2|chrX (35720214-35720399) | |
| 1-159, gnl|canFam2|chrX (35720214-35720490) | |
| 1-159, gnl|danRer3|chr3 (5187958-5187783) | |
| 1-159, gnl|danRer3|chr3 (5187953-5187769) | |
| 1-159, gnl|danRer3|chr3 (5187954-5187760) | |
| 1-159, gnl|dasNov1|scaffold_103535 (2147-2334) | |
| 1-159, gnl|dasNov1|scaffold_28058 (5555-5378) | |
| 1-159, gnl|dasNov1|scaffold_28058 (5545-5377) | |
| 1-159, gnl|echTel1|scaffold_228724 (2461-2281) | |
| 1-159, gnl|echTel1|scaffold_228724 (2452-2267) | |
| 1-159, gnl|echTel1|scaffold_228724 (2452-2177) | |
| 1-159, gnl|fr1|chrUn (229905183-229905008) | |
| 1-159, gnl|fr1|chrUn (229905179-229904994) | |
| 1-159, gnl|fr1|chrUn (229905179-229904993) | |
| 1-159, gnl|galGal2|chr1 (105731979-105731797) | |
| 1-159, gnl|galGal2|chr1 (105731968-105731783) | |
| 1-159, gnl|galGal2|chr1 (105731968-105731690) | |
| 1-159, gnl|hg17|chr4 (104852169-104852356) | |
| 1-159, gnl|hg17|chrX (40961733-40961918) | |
| 1-159, gnl|Hg17|chrX (40961762-40961920) | |
| 1-159, gnl|hg17|chrY (13466297-13466472) | |
| 1-159, gnl|loxAfr1|scaffold_6969 (4791-4608) | |
| 1-159, gnl|loxAfr1|scaffold_6969 (4779-4594) | |
| 1-159, gnl|loxAfr1|scaffold_6969 (4779-4494) | |
| 1-159, gnl|mm7|chrX (11723317-11723497) | |
| 1-159, gnl|mm7|chrX (11723326-11723511) | |
| 1-159, gnl|mm7|chrX (11723326-11723599) | |
| 1-159, gnl|Mm7|chrX (11723355-11723513) | |
| 1-159, gnl|monDom2|scaffold_29 (22346102-22345907) | |
| 1-159, gnl|monDom2|scaffold_29 (22346078-22345893) | |
| 1-159, gnl|monDom2|scaffold_29 (22346077-22345794) | |
| 1-159, gnl|oryCun1|scaffold_213972 (26759-26939) | |
| 1-159, gnl|oryCun1|scaffold_213972 (26768-26953) | |
| 1-159, gnl|oryCun1|scaffold_213972 (26768-27050) | |
| 1-159, gnl|panTro1|chr3 (121238695-121238882) | |
| 1-159, gnl|panTro1|chrX (42257357-42257542) | |
| 1-159, gnl|panTro1|chrY (14028162-14028337) | |
| 1-159, gnl|rheMac2|chr5 (96570516-96570704) | |
| 1-159, gnl|rheMac2|chrX (39115186-39115367) | |
| 1-159, gnl|rheMac2|chrX (39115196-39115381) | |
| 1-159, gnl|rn3|chrX (21552416-21552236) | |
| 1-159, gnl|rn3|chrX (21552407-21552222) | |
| 1-159, gnl|rn3|chrX (21552407-21552131) | |
| 1-159, gnl|tetNig1|chr2 (6499035-6498850) | |
| 1-159, gnl|tetNig1|chr2 (6499034-6498849) | |
| 1-159, gnl|tetNig1|chrUn_random (129655572-129655397) | |
| 1-159, gnl|xenTro1|scaffold_16 (943537-943361) | |
| 1-159, gnl|xenTro1|scaffold_16 (943530-943347) | |
| 1-159, gnl|xenTro1|scaffold_16 (943532-943345) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| cbl (0.229595) | |
| tes (0.207814) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| spl (0.143184) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| bla (0.124347) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.229595) | |
| tes (0.207814) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| spl (0.143184) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| bla (0.124347) |