Non-Coding RNA Search

Ss1.1-Pig4-TMW8018M18.5

Sequence:


               
               GGAATTTTTTAAAAAAAATGTTTAACCAAGAGAAATTATTTATGGAAATTTCTATACCAG
ATAACACAATTCTCTTTTATTTGAAATCACTGGTATCTGTTGGGTTAAACACAGGTTATT
TTCTATTCACTTCTAACAGAATAAGAAAAGCAATGGGTTAAGTATTGGTGTATTTTAAAA
CTCAACCTGAGTTGTACCTATTTTATGTATCTCATGAAGAGAAAATGCCCTACTTAAGCA
ACAAACAGGAAATTCCTGTTGGTATATTATTGTACTTCTGGTTAATTTGGTCATTCCTTA
CAATTGCTTATTCTTTTCAAATAAGGATCTGTTCTTACTTGCATCCTAAATTGAGATTTA
AAATTCTCAAAAGGTTAACGCTTCAATATTGAACACTGGAGTGTACATTAAGAAAAATTC
CTTTGACGCTATTACATGATTTTTTTCTATGTAAAAATTTGGACAATTTATATGACTCGC
TTTTTCTCATGTAAAAAAAGGTTATTCAAGTTGTAGTACCCATATAACTGACAATCCTAG
CCATCTGGTCTAATCTGGGGGATCTGACACTAAGTTTTTGTTAAGGATTGGAAATTACAC
TAGTCTCTTTAAAGAAGGAAAAAAATTTCCAATTCAATACTGACAAATTTTTGCTTGTAG
TTTTACTGTACATTTGTGTTTAAAAAAACAAAAGCCAGAACAAACCCAAGTTGTCCAGGC
AAATAAATTCATATCTTTTGTCATGTCTGATATTATAATCTTCTATGTAAGTTTTTTAAT
TAAAGTTATTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAATTTTTTAAAAAAAATGTTTAACCAAGAGAAATTATTTATGGAAATTTCTATACCAG
ATAACACAATTCTCTTTTATTTGAAATCACTGGTATCTGTTGGGTTAAACACAGGTTATT
TTCTATTCACTTCTAACAGAATAAGAAAAGCAATGGGTTAAGTATTGGTGTATTTTAAAA
CTCAACCTGAGTTGTACCTATTTTATGTATCTCATGAAGAGAAAATGCCCTACTTAAGCA
ACAAACAGGAAATTCCTGTTGGTATATTATTGTACTTCTGGTTAATTTGGTCATTCCTTA
CAATTGCTTATTCTTTTCAAATAAGGATCTGTTCTTACTTGCATCCTAAATTGAGATTTA
AAATTCTCAAAAGGTTAACGCTTCAATATTGAACACTGGAGTGTACATTAAGAAAAATTC
CTTTGACGCTATTACATGATTTTTTTCTATGTAAAAATTTGGACAATTTATATGACTCGC
TTTTTCTCATGTAAAAAAAGGTTATTCAAGTTGTAGTACCCATATAACTGACAATCCTAG
CCATCTGGTCTAATCTGGGGGATCTGACACTAAGTTTTTGTTAAGGATTGGAAATTACAC
TAGTCTCTTTAAAGAAGGAAAAAAATTTCCAATTCAATACTGACAAATTTTTGCTTGTAG
TTTTACTGTACATTTGTGTTTAAAAAAACAAAAGCCAGAACAAACCCAAGTTGTCCAGGC
AAATAAATTCATATCTTTTGTCATGTCTGATATTATAATCTTCTATGTAAGTTTTTTAAT
TAAAGTTATTTC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               8-792, gnl|bosTau2|chr2 (55591135-55591893)
               

               
               8-792, gnl|Hg17|chr2 (210712535-210711658)
               

               
               8-792, gnl|Mm7|chr1 (66959887-66959074)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-792, gnl|bosTau2|chr2 (55591135-55591893)
               

               
               8-792, gnl|Hg17|chr2 (210712535-210711658)
               

               
               8-792, gnl|Mm7|chr1 (66959887-66959074)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               kid (0.259471)
               

               
               sag (0.182715)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               ret (0.128733)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.259471)
               

               
               sag (0.182715)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               ret (0.128733)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	8-792, gnl\|bosTau2\|chr2 (55591135-55591893)
	8-792, gnl\|Hg17\|chr2 (210712535-210711658)
	8-792, gnl\|Mm7\|chr1 (66959887-66959074)

	kid (0.259471)
	sag (0.182715)
	fco (0.157208)
	isp (0.150376)
	liv (0.146284)
	ret (0.128733)
	med (0.116252)
	ecc (0.115035)