Non-Coding RNA Search

Ss1.1-Pig4-TMW8018N10.5

Sequence:


               
               ATAAGTAGAATTCTGGAGTTTTCCTCTGCTGCTGGAGCAGAGTTTGGAGAAACCACTTTA
ATAAGGGCAAGAACAGAGGAATTCTGGTTCTTATGGTGAGAGACAAAGCTGGCTAACAGA
AAAACTTGCAGACATCTTGACTAGTATTTGTCATCATGCTCTATGGAGGGAAAAGAGAGC
TTTTGTGCCCAGGCTGTCCTGGTGGTGTAATATATGGAGGCAGAATATAAAAGGCATTTT
ATGGCTTTTGCAAGAGAATCTTTGAACAAGAATTTATTTGGGACCAGTTCAGTTCAAGGC
ATTTCATACGCTCTCTTCCTCTTCCTAGTTCCAGGATGGGTTACACCTTACCTTCAAGAG
AGCATAAAGCAGGCCCTTTGGCCTCTTTACATCATGCCTGTTTGACTAGGGCAGGGAGTA
CAGCAGGTTGCTTGATGGCACAGCCTCATCAAGGCTTCCAGAATCCCTGGACTCAGAGCA
GCCCCAGCTGGTCCAACTGTCTGTTCAGTGACTCCAGTCACTCCATCAATAGTTAGAGGA
AAACTGCTCTACCGTGCAGACAAAATTTGTCTTTCTTTGGTTGCCACTGTTCACCTTGGT
CAGACAGTATCTAGTCTTTAAGCTACGTTAGGATGAAGGTTCTGGAGCTTGCCCCAGAGG
CCTGCAGTTTTTGGTTACCAGCAGAGGGAGCTGCAGGAGCAGTGAGGGGCCTTACCACTT
GTTCAGCTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAAGTAGAATTCTGGAGTTTTCCTCTGCTGCTGGAGCAGAGTTTGGAGAAACCACTTTA
ATAAGGGCAAGAACAGAGGAATTCTGGTTCTTATGGTGAGAGACAAAGCTGGCTAACAGA
AAAACTTGCAGACATCTTGACTAGTATTTGTCATCATGCTCTATGGAGGGAAAAGAGAGC
TTTTGTGCCCAGGCTGTCCTGGTGGTGTAATATATGGAGGCAGAATATAAAAGGCATTTT
ATGGCTTTTGCAAGAGAATCTTTGAACAAGAATTTATTTGGGACCAGTTCAGTTCAAGGC
ATTTCATACGCTCTCTTCCTCTTCCTAGTTCCAGGATGGGTTACACCTTACCTTCAAGAG
AGCATAAAGCAGGCCCTTTGGCCTCTTTACATCATGCCTGTTTGACTAGGGCAGGGAGTA
CAGCAGGTTGCTTGATGGCACAGCCTCATCAAGGCTTCCAGAATCCCTGGACTCAGAGCA
GCCCCAGCTGGTCCAACTGTCTGTTCAGTGACTCCAGTCACTCCATCAATAGTTAGAGGA
AAACTGCTCTACCGTGCAGACAAAATTTGTCTTTCTTTGGTTGCCACTGTTCACCTTGGT
CAGACAGTATCTAGTCTTTAAGCTACGTTAGGATGAAGGTTCTGGAGCTTGCCCCAGAGG
CCTGCAGTTTTTGGTTACCAGCAGAGGGAGCTGCAGGAGCAGTGAGGGGCCTTACCACTT
GTTCAGCTTTTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               5-124, + strand, RNAz p=0.938383
               

               
               586-721, + strand, RNAz p=0.628747

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-124, + strand, RNAz p=0.938383
               

               
               586-721, + strand, RNAz p=0.628747

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of NM_020447, +
               

               
               5' of NM_020447, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_020447, +
               

               
               5' of NM_020447, +

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               5-345, gnl|bosTau2|chr21 (23070069-23069736)
               

               
               5-345, gnl|Hg17|chr15 (72981834-72981507)
               


               
               397-721, gnl|bosTau2|chr21 (23069720-23069381)
               

               
               397-721, gnl|canFam2|chr30 (40940677-40940925)
               

               
               397-721, gnl|dasNov1|scaffold_5247 (7931-7649)
               

               
               397-721, gnl|echTel1|scaffold_320607 (63991-64191)
               

               
               397-721, gnl|hg17|chr15 (72981091-72981354)
               

               
               397-721, gnl|Hg17|chr15 (72981451-72981126)
               

               
               397-721, gnl|loxAfr1|scaffold_2423 (101343-101081)
               

               
               397-721, gnl|mm7|chr9 (57569261-57569014)
               

               
               397-721, gnl|Mm7|chr9 (57568926-57569225)
               

               
               397-721, gnl|monDom2|scaffold_41 (2596789-2596503)
               

               
               397-721, gnl|panTro1|chr16_random (22108308-22108572)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-345, gnl|bosTau2|chr21 (23070069-23069736)
               

               
               5-345, gnl|Hg17|chr15 (72981834-72981507)
               


               
               397-721, gnl|bosTau2|chr21 (23069720-23069381)
               

               
               397-721, gnl|canFam2|chr30 (40940677-40940925)
               

               
               397-721, gnl|dasNov1|scaffold_5247 (7931-7649)
               

               
               397-721, gnl|echTel1|scaffold_320607 (63991-64191)
               

               
               397-721, gnl|hg17|chr15 (72981091-72981354)
               

               
               397-721, gnl|Hg17|chr15 (72981451-72981126)
               

               
               397-721, gnl|loxAfr1|scaffold_2423 (101343-101081)
               

               
               397-721, gnl|mm7|chr9 (57569261-57569014)
               

               
               397-721, gnl|Mm7|chr9 (57568926-57569225)
               

               
               397-721, gnl|monDom2|scaffold_41 (2596789-2596503)
               

               
               397-721, gnl|panTro1|chr16_random (22108308-22108572)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cov (0.132153)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)
               

               
               cty (0.10408)

	5-124, + strand, RNAz p=0.938383
	586-721, + strand, RNAz p=0.628747

	5-345, gnl\|bosTau2\|chr21 (23070069-23069736)
	5-345, gnl\|Hg17\|chr15 (72981834-72981507)

	397-721, gnl\|bosTau2\|chr21 (23069720-23069381)
	397-721, gnl\|canFam2\|chr30 (40940677-40940925)
	397-721, gnl\|dasNov1\|scaffold_5247 (7931-7649)
	397-721, gnl\|echTel1\|scaffold_320607 (63991-64191)
	397-721, gnl\|hg17\|chr15 (72981091-72981354)
	397-721, gnl\|Hg17\|chr15 (72981451-72981126)
	397-721, gnl\|loxAfr1\|scaffold_2423 (101343-101081)
	397-721, gnl\|mm7\|chr9 (57569261-57569014)
	397-721, gnl\|Mm7\|chr9 (57568926-57569225)
	397-721, gnl\|monDom2\|scaffold_41 (2596789-2596503)
	397-721, gnl\|panTro1\|chr16_random (22108308-22108572)