Non-Coding RNA Search

Ss1.1-Pig4-TMW8018O04.5

Sequence:


               
               AGCTGCATTTGTGACCTACGCCATAGCTAATGGCAACGCCGGATTCTTAACCCACTAAGC
AAGGCCAGGGATCAAACCTGCAACCTCATGGTTCCCAGTCAGATTCGTTAACCACTGCGC
CACGACGGGAACTCCTCCTCTAGCTTCTTTTCCAGAGCGATTTAATAACAAACCAGGTAA
CATACTCCTCAGCCCCCGCTCCAGTTTGAAATGTGCTATTCTGGAGGGCTCGCTGTCTGC
AGTCTCAGGAGGCCTAGGTGGTTTTTCATCGCCCTGCACCGCAGGGGGAGAAGACAGCCA
GGACTTTCTCTCCAGGTGCGGGCTAGGATAGCCAGCATGCAGGTGGGGAACTGACCTCAG
GAAGCCAAGAATTAACATCAGGTAAGGGCTGGCCAAGAAGATGCTACACTCTGAACACTT
AGTGATAGGACTCAAGAGAGATTGGACTGGTGGGAACTTGCTAAAAGCCCCGCAAAGAAA
AAACAGTCCATGCTAAGTCTTGGTGAACAGACTACTACAGTGAACGCTTCTGTTGCACCG
TCATACCATGTGCTGCTCCTTTGTAAACCTCCAGAGGCTGTTCTCAAAGGTTTTACAGTC
TGTTTAAGGACACCACCTTAAAGGTACAAAGAGACTGAGTTGTACCAGTGGGTTTCACAC
GTTTTCATCCTAAAACTGCTGGCTTTCTCCATCACTCCCCAACCTGGGGGTGAACTGAGA
GTCGCTGAGGCTCGGCCTGGCCACCCTGGGGGCTGGAAGGTCCTCATGCTTGCCACCCAT
TGTCACACTTGCAAGCCCAGGTAGGCCAGCTCTAGATTACCTGCTGTTGAAATTTGAAAC
TCACTCCTAGTTAGGATACTTTTCCTTCTAAGAAGCATGCAACACTTAGCCAGAAACGCA
AAAAGGCATATGTATTTCCCAAGCTTTTAAAAAAATCAGCTTTAGAATTTTGTGTGGTAA
TGTGCAGTGCAGCAAACCTACCTACAAGTAAATTATTGAGTTATTTATTTCTATTTCAGG
GTTTTGTTTTTTTATGACTTTTATTGATTTTCCCTTTCAGTAATGAATGATGTGACCAAC
CAAGGAGAATTTTTTGTTCTGTTACTAAGAGTATATTTTACAATTAGGAATTATGCAAAC
GGAGGGGTCATCTTTAAATGTTTTTTATGTTTGTAAGTGGTGTTTTCCATTCAAAGAATA
ATTATCTTTGGGGGATTATTGTGGTGTCATATCACTTCCAATATTTTCCGTACTCCACAC
AGATGGGTGTTGAGAATCAATAAAGTGAAAGTTCCTCTGAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTGCATTTGTGACCTACGCCATAGCTAATGGCAACGCCGGATTCTTAACCCACTAAGC
AAGGCCAGGGATCAAACCTGCAACCTCATGGTTCCCAGTCAGATTCGTTAACCACTGCGC
CACGACGGGAACTCCTCCTCTAGCTTCTTTTCCAGAGCGATTTAATAACAAACCAGGTAA
CATACTCCTCAGCCCCCGCTCCAGTTTGAAATGTGCTATTCTGGAGGGCTCGCTGTCTGC
AGTCTCAGGAGGCCTAGGTGGTTTTTCATCGCCCTGCACCGCAGGGGGAGAAGACAGCCA
GGACTTTCTCTCCAGGTGCGGGCTAGGATAGCCAGCATGCAGGTGGGGAACTGACCTCAG
GAAGCCAAGAATTAACATCAGGTAAGGGCTGGCCAAGAAGATGCTACACTCTGAACACTT
AGTGATAGGACTCAAGAGAGATTGGACTGGTGGGAACTTGCTAAAAGCCCCGCAAAGAAA
AAACAGTCCATGCTAAGTCTTGGTGAACAGACTACTACAGTGAACGCTTCTGTTGCACCG
TCATACCATGTGCTGCTCCTTTGTAAACCTCCAGAGGCTGTTCTCAAAGGTTTTACAGTC
TGTTTAAGGACACCACCTTAAAGGTACAAAGAGACTGAGTTGTACCAGTGGGTTTCACAC
GTTTTCATCCTAAAACTGCTGGCTTTCTCCATCACTCCCCAACCTGGGGGTGAACTGAGA
GTCGCTGAGGCTCGGCCTGGCCACCCTGGGGGCTGGAAGGTCCTCATGCTTGCCACCCAT
TGTCACACTTGCAAGCCCAGGTAGGCCAGCTCTAGATTACCTGCTGTTGAAATTTGAAAC
TCACTCCTAGTTAGGATACTTTTCCTTCTAAGAAGCATGCAACACTTAGCCAGAAACGCA
AAAAGGCATATGTATTTCCCAAGCTTTTAAAAAAATCAGCTTTAGAATTTTGTGTGGTAA
TGTGCAGTGCAGCAAACCTACCTACAAGTAAATTATTGAGTTATTTATTTCTATTTCAGG
GTTTTGTTTTTTTATGACTTTTATTGATTTTCCCTTTCAGTAATGAATGATGTGACCAAC
CAAGGAGAATTTTTTGTTCTGTTACTAAGAGTATATTTTACAATTAGGAATTATGCAAAC
GGAGGGGTCATCTTTAAATGTTTTTTATGTTTGTAAGTGGTGTTTTCCATTCAAAGAATA
ATTATCTTTGGGGGATTATTGTGGTGTCATATCACTTCCAATATTTTCCGTACTCCACAC
AGATGGGTGTTGAGAATCAATAAAGTGAAAGTTCCTCTGAAAAAAAAA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               333-698, gnl|bosTau2|chr8 (37518261-37518633)
               

               
               333-698, gnl|Hg17|chr8 (23343684-23343188)
               


               
               746-1300, gnl|bosTau2|chr8 (37518636-37519199)
               

               
               746-1300, gnl|Hg17|chr8 (23343185-23342620)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               333-698, gnl|bosTau2|chr8 (37518261-37518633)
               

               
               333-698, gnl|Hg17|chr8 (23343684-23343188)
               


               
               746-1300, gnl|bosTau2|chr8 (37518636-37519199)
               

               
               746-1300, gnl|Hg17|chr8 (23343185-23342620)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

Help | Less info


               
               ece (0.45861)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               jca (0.11396)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.45861)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               jca (0.11396)

	333-698, gnl\|bosTau2\|chr8 (37518261-37518633)
	333-698, gnl\|Hg17\|chr8 (23343684-23343188)

	746-1300, gnl\|bosTau2\|chr8 (37518636-37519199)
	746-1300, gnl\|Hg17\|chr8 (23343185-23342620)

	ece (0.45861)
	nlu (0.191681)
	ill (0.175593)
	fbs (0.175346)
	sin (0.174948)
	lun (0.150489)
	ski (0.146735)
	liv (0.146284)
	spl (0.143184)
	lnt (0.142308)
	csk (0.140746)
	lyg (0.133103)
	kid (0.129735)
	ret (0.128733)
	ese (0.126502)
	bla (0.124347)
	jca (0.11396)