Ss1.1-Pig4-TMW8018O06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACAGATCATTTGGGATGACCCTACAGCCAGGGAAGAGAGAGCAAGACTTGCCAGCAATTT GCAGTGGCCTAGCTGTCCCACACAATACTCTGAGCTTCAGGTTGACGTTAAAAAACTGGA GGATTCTCCTTTCCAGGAGCCTTTACATGATTCAGAAAATTGCTGCACGGCTGTCTGTGA TCCTGGGAACATTTGTGTGACTGAAGCCCCAAAACACCCGGTCTCTGAAGAAGTGGAAAC TCCAATAAAAGACAGCCACCTGATCCCTACGCCTCAAGCCCCCAGTATTGCCTTCCCCCT AGCCAACCCACCTGTGGCTCCACACCCTAGAGAAAAGGTTATAACGATAGAGGAAACTCA TGAAGACTTAAAAAAACAGTACATATTTCAGCTGTCATCTCTGAATCCTCAAGAACGTAT TGATTATTGTCATCTGATTGAAAAACTAGGTGGATTAGTGATTGAGAAGCAGTGCTTTGA TCCCAACTGTACACATATTGTTGTGGGACATCCACTTCGGAACGAGAAGTATTTAGCCTC AGTGGCAGCTGGAAAGTGGGTGCTCCATCGCTCCTACCTTGAAGCATGCAGGACTGCTGG GCGCTTCGTGCCGGAAGAAGACTATGAATGGGGAAGCAGTTCCATACTTGATGTTTTGAC TGGAATCAGTGTACAGCAGCGAAAACTAGCACTTGCAGCAATGAGATGGAGGAAAAAAAT CCAGCAAAGACAAGAATCAGGCATTGTTGAGGGGGCATTTAGTGGGTGGAAGGCTATTTT ACATGTTGATCAGTCTCGAGAAGCAGGATTCAAACGCCTTCTTCAGTCAGGAGGAGCAAA GGTGCTACCTGGTCGTTCTGTATCTTTATTTAAAGAAGCTACACATCTCTTTTCTGACTT TAATAAACTGAAACCAGATGACTCAGGAGTTAATATAGCAGAAGCTGCTGCCCAGAATGT ATACTGCTTGAAAACAGAATACATTGCTGATTATCTTATGCAGGAATCCCCACCTCCAGT AGAAAATTACTGTCTACCAGAAGCTGTTTCCTTTCTTCCGAACAATAAGGAACCTGGGCC TGGATTCTCACAAAAGAGGAAAGCTCCTACCGAGAAAAATAAAATCAAACGCCCTAGAGT ACAGTAATTGTACTTAGTTACCAAACATTAAATGTTTTTCAAATTAATAGCTTGAACGTT ACTCTGATGGATTTGTATCATAAAGACAAGAACCTGAAGAATTCCACTTCAGTGAAACAA TGACCCTGCTTAAAGTTAGTTTTTTAACAACTGAAATTTTAATCACTGAAATATTAAACT GTTCCTGAGTGGAAAGTCACTGAAATAACAACAGAATACAACTGCTCAGCTAGGTTGTTG CTAAACCATATTGACATGTGAAAGGGGCTTTTGGTTTATTTATTTTCGTGTAAATATCTG AGTCTATAACTTAGTGGAAGTTTTAGCAAGGTGATGGATTTTGCCTTAAAATGTCTACTT AAATAACAATAAGGAAGTTATCAATTGGAATTTATTAACGTTTTCCCTGATTTTTATCTT ACCATTTTACGTCTTTTTAACAGGAGCCTGAGCTACAAGGGTTAATGAGGAACCGAGACT TTAAACGTAAATGAGTGTGTGTATATGTGTATATGCATGTTTGTATGAATCTCCATGACG TTTGCCAAGTTTGGGCACCAAAACTTGGAAAATAAAGACAATAAAGAATAAAAGTAGTGA CTCAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACAGATCATTTGGGATGACCCTACAGCCAGGGAAGAGAGAGCAAGACTTGCCAGCAATTT GCAGTGGCCTAGCTGTCCCACACAATACTCTGAGCTTCAGGTTGACGTTAAAAAACTGGA GGATTCTCCTTTCCAGGAGCCTTTACATGATTCAGAAAATTGCTGCACGGCTGTCTGTGA TCCTGGGAACATTTGTGTGACTGAAGCCCCAAAACACCCGGTCTCTGAAGAAGTGGAAAC TCCAATAAAAGACAGCCACCTGATCCCTACGCCTCAAGCCCCCAGTATTGCCTTCCCCCT AGCCAACCCACCTGTGGCTCCACACCCTAGAGAAAAGGTTATAACGATAGAGGAAACTCA TGAAGACTTAAAAAAACAGTACATATTTCAGCTGTCATCTCTGAATCCTCAAGAACGTAT TGATTATTGTCATCTGATTGAAAAACTAGGTGGATTAGTGATTGAGAAGCAGTGCTTTGA TCCCAACTGTACACATATTGTTGTGGGACATCCACTTCGGAACGAGAAGTATTTAGCCTC AGTGGCAGCTGGAAAGTGGGTGCTCCATCGCTCCTACCTTGAAGCATGCAGGACTGCTGG GCGCTTCGTGCCGGAAGAAGACTATGAATGGGGAAGCAGTTCCATACTTGATGTTTTGAC TGGAATCAGTGTACAGCAGCGAAAACTAGCACTTGCAGCAATGAGATGGAGGAAAAAAAT CCAGCAAAGACAAGAATCAGGCATTGTTGAGGGGGCATTTAGTGGGTGGAAGGCTATTTT ACATGTTGATCAGTCTCGAGAAGCAGGATTCAAACGCCTTCTTCAGTCAGGAGGAGCAAA GGTGCTACCTGGTCGTTCTGTATCTTTATTTAAAGAAGCTACACATCTCTTTTCTGACTT TAATAAACTGAAACCAGATGACTCAGGAGTTAATATAGCAGAAGCTGCTGCCCAGAATGT ATACTGCTTGAAAACAGAATACATTGCTGATTATCTTATGCAGGAATCCCCACCTCCAGT AGAAAATTACTGTCTACCAGAAGCTGTTTCCTTTCTTCCGAACAATAAGGAACCTGGGCC TGGATTCTCACAAAAGAGGAAAGCTCCTACCGAGAAAAATAAAATCAAACGCCCTAGAGT ACAGTAATTGTACTTAGTTACCAAACATTAAATGTTTTTCAAATTAATAGCTTGAACGTT ACTCTGATGGATTTGTATCATAAAGACAAGAACCTGAAGAATTCCACTTCAGTGAAACAA TGACCCTGCTTAAAGTTAGTTTTTTAACAACTGAAATTTTAATCACTGAAATATTAAACT GTTCCTGAGTGGAAAGTCACTGAAATAACAACAGAATACAACTGCTCAGCTAGGTTGTTG CTAAACCATATTGACATGTGAAAGGGGCTTTTGGTTTATTTATTTTCGTGTAAATATCTG AGTCTATAACTTAGTGGAAGTTTTAGCAAGGTGATGGATTTTGCCTTAAAATGTCTACTT AAATAACAATAAGGAAGTTATCAATTGGAATTTATTAACGTTTTCCCTGATTTTTATCTT ACCATTTTACGTCTTTTTAACAGGAGCCTGAGCTACAAGGGTTAATGAGGAACCGAGACT TTAAACGTAAATGAGTGTGTGTATATGTGTATATGCATGTTTGTATGAATCTCCATGACG TTTGCCAAGTTTGGGCACCAAAACTTGGAAAATAAAGACAATAAAGAATAAAAGTAGTGA CTCAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1612-1730, + strand, RNAz p=0.514144 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1612-1730, + strand, RNAz p=0.514144 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 1-168, gnl|bosTau2|chr1 (58235994-58235828) | |
| 1-168, gnl|Hg17|chr3 (134819924-134819758) | |
| 1-168, gnl|Mm7|chr9 (103056082-103056248) | |
| 448-614, gnl|bosTau2|chr1 (58232093-58231927) | |
| 448-614, gnl|canFam2|chr23 (33581454-33581646) | |
| 448-614, gnl|danRer3|chr24 (6407361-6407186) | |
| 448-614, gnl|dasNov1|scaffold_70864 (785-980) | |
| 448-614, gnl|echTel1|scaffold_323647 (142659-142463) | |
| 448-614, gnl|fr1|chrUn (3590697-3590886) | |
| 448-614, gnl|galGal2|chr2 (41744067-41744241) | |
| 448-614, gnl|hg17|chr3 (134813924-134814119) | |
| 448-614, gnl|Hg17|chr3 (134814096-134813930) | |
| 448-614, gnl|mm7|chr9 (103059066-103058871) | |
| 448-614, gnl|Mm7|chr9 (103058892-103059058) | |
| 448-614, gnl|monDom2|scaffold_7 (67305789-67305594) | |
| 448-614, gnl|oryCun1|scaffold_213910 (17409-17215) | |
| 448-614, gnl|panTro1|chr2 (136954832-136955027) | |
| 448-614, gnl|rheMac2|chr2 (154120536-154120342) | |
| 448-614, gnl|rn3|chr8 (108372157-108371962) | |
| 448-614, gnl|tetNig1|chr6 (5014721-5014910) | |
| 448-614, gnl|xenTro1|scaffold_436 (494731-494542) | |
| 995-1746, gnl|bosTau2|chr1 (58211927-58211185) | |
| 995-1746, gnl|Hg17|chr3 (134802944-134802192) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-168, gnl|bosTau2|chr1 (58235994-58235828) | |
| 1-168, gnl|Hg17|chr3 (134819924-134819758) | |
| 1-168, gnl|Mm7|chr9 (103056082-103056248) | |
| 448-614, gnl|bosTau2|chr1 (58232093-58231927) | |
| 448-614, gnl|canFam2|chr23 (33581454-33581646) | |
| 448-614, gnl|danRer3|chr24 (6407361-6407186) | |
| 448-614, gnl|dasNov1|scaffold_70864 (785-980) | |
| 448-614, gnl|echTel1|scaffold_323647 (142659-142463) | |
| 448-614, gnl|fr1|chrUn (3590697-3590886) | |
| 448-614, gnl|galGal2|chr2 (41744067-41744241) | |
| 448-614, gnl|hg17|chr3 (134813924-134814119) | |
| 448-614, gnl|Hg17|chr3 (134814096-134813930) | |
| 448-614, gnl|mm7|chr9 (103059066-103058871) | |
| 448-614, gnl|Mm7|chr9 (103058892-103059058) | |
| 448-614, gnl|monDom2|scaffold_7 (67305789-67305594) | |
| 448-614, gnl|oryCun1|scaffold_213910 (17409-17215) | |
| 448-614, gnl|panTro1|chr2 (136954832-136955027) | |
| 448-614, gnl|rheMac2|chr2 (154120536-154120342) | |
| 448-614, gnl|rn3|chr8 (108372157-108371962) | |
| 448-614, gnl|tetNig1|chr6 (5014721-5014910) | |
| 448-614, gnl|xenTro1|scaffold_436 (494731-494542) | |
| 995-1746, gnl|bosTau2|chr1 (58211927-58211185) | |
| 995-1746, gnl|Hg17|chr3 (134802944-134802192) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| tbr (0.308356) | |
| spl (0.286369) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| thg (0.253582) | |
| bla (0.248694) | |
| tra (0.246184) | |
| ece (0.229305) | |
| nlu (0.191681) | |
| gul (0.177588) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| nco (0.161734) | |
| eli (0.151814) | |
| bfe (0.149858) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tbr (0.308356) | |
| spl (0.286369) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| thg (0.253582) | |
| bla (0.248694) | |
| tra (0.246184) | |
| ece (0.229305) | |
| nlu (0.191681) | |
| gul (0.177588) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| nco (0.161734) | |
| eli (0.151814) | |
| bfe (0.149858) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| eje (0.0988338) | |
| ldo (0.0970026) |