Ss1.1-Pig4-TMW8018O17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTCAGACGCTGCGGGAAACTCAACGCCCCCGAGAACGGCTACATGAGGTGCTCCAGCGA CGGCGATAATTACGGGGCTACCTGTGAGTTCTCGTGCGTCGGAGGCTACGAGCTACAGGG AAGCCCTGCCCGAGTCTGCCAGTCCAACCTGGCTTGGTCTGGCACGGAGCCCACCTGCGC AGCCATGAATGTCAATGTGGGCGTCAGAACGGCAGCTGCCCTTCTGGATCAGTTTTATGA GAAAAGGAGACTGCTCATTTTGTCCACACCCACAGCCCGAAACCTCCTCTACCGGATGCA GCTGGGGATGCTGCAGCAAGCACAGTGTGGCCTGGATCTTCGACACATCACGGTAGTGGA GCTGGTGGGCGTGTTCCCGACTCTCATCGGCAGGATCGGAGCAAAGATTATGCCTCCAGC CCTAGCCCTGCAGCTCAGGCTGCTGCTGCGAATCCCACTCTATTCCTTCAGTATGGTGCT AGTGGATAAGCATGGCATGGACAAGGAGCGCTACGTCTCCCTGGTGACACCTGTGGCCCT CTTCAACCTGATCGATACTTTCCCCTTGAGAAAAGAAGAGATGGTCCTGCAAGCTGAAAT GGGCCAGACCTGTAGCACCTGATGGGACGGGTCCTCTCTCGGCAGTTCCTCTTCTCTTTC TACATCGTGCTCTGCACACGGGAAGGCCTGAAAAGTATCCTTGATGTACAGATTTTTATT TGTAATTTTTAAAGTCTATTTTATTATACGCTTTCTTTGCACTTAAAAAATTAACACTGC TTTTTGTACTTTGAAGCATTCCAAAAAAGAGGAATATGTTTAGTCTTATAACTCCATCGT GGCTGGTCAATTTCGTAGTGAAATGAGATACTACAACCATAGACATGTTTTGAATGCAGT ATAGTGTGATACATTATCTATCTGCTGGTTTTTATATATAAAACTTTTATTAATAAAATA TCTTGGAGCAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTCAGACGCTGCGGGAAACTCAACGCCCCCGAGAACGGCTACATGAGGTGCTCCAGCGA CGGCGATAATTACGGGGCTACCTGTGAGTTCTCGTGCGTCGGAGGCTACGAGCTACAGGG AAGCCCTGCCCGAGTCTGCCAGTCCAACCTGGCTTGGTCTGGCACGGAGCCCACCTGCGC AGCCATGAATGTCAATGTGGGCGTCAGAACGGCAGCTGCCCTTCTGGATCAGTTTTATGA GAAAAGGAGACTGCTCATTTTGTCCACACCCACAGCCCGAAACCTCCTCTACCGGATGCA GCTGGGGATGCTGCAGCAAGCACAGTGTGGCCTGGATCTTCGACACATCACGGTAGTGGA GCTGGTGGGCGTGTTCCCGACTCTCATCGGCAGGATCGGAGCAAAGATTATGCCTCCAGC CCTAGCCCTGCAGCTCAGGCTGCTGCTGCGAATCCCACTCTATTCCTTCAGTATGGTGCT AGTGGATAAGCATGGCATGGACAAGGAGCGCTACGTCTCCCTGGTGACACCTGTGGCCCT CTTCAACCTGATCGATACTTTCCCCTTGAGAAAAGAAGAGATGGTCCTGCAAGCTGAAAT GGGCCAGACCTGTAGCACCTGATGGGACGGGTCCTCTCTCGGCAGTTCCTCTTCTCTTTC TACATCGTGCTCTGCACACGGGAAGGCCTGAAAAGTATCCTTGATGTACAGATTTTTATT TGTAATTTTTAAAGTCTATTTTATTATACGCTTTCTTTGCACTTAAAAAATTAACACTGC TTTTTGTACTTTGAAGCATTCCAAAAAAGAGGAATATGTTTAGTCTTATAACTCCATCGT GGCTGGTCAATTTCGTAGTGAAATGAGATACTACAACCATAGACATGTTTTGAATGCAGT ATAGTGTGATACATTATCTATCTGCTGGTTTTTATATATAAAACTTTTATTAATAAAATA TCTTGGAGCAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-182, gnl|bosTau2|chrX (31391448-31391267) | |
| 1-182, gnl|canFam2|chrX (32893087-32893292) | |
| 1-182, gnl|danRer3|chrNA (241455768-241455961) | |
| 1-182, gnl|dasNov1|scaffold_51355 (39410-39223) | |
| 1-182, gnl|echTel1|scaffold_324669 (43393-43590) | |
| 1-182, gnl|fr1|chrUn (231563960-231564156) | |
| 1-182, gnl|galGal2|chr1 (106705540-106705346) | |
| 1-182, gnl|hg17|chrX (37775479-37775676) | |
| 1-182, gnl|Hg17|chrX (37775668-37775487) | |
| 1-182, gnl|loxAfr1|scaffold_3904 (118588-118391) | |
| 1-182, gnl|mm7|chrX (8487994-8488192) | |
| 1-182, gnl|Mm7|chrX (8488183-8488002) | |
| 1-182, gnl|monDom2|scaffold_29 (26806160-26805963) | |
| 1-182, gnl|oryCun1|scaffold_194648 (633-830) | |
| 1-182, gnl|panTro1|chrX (38967215-38967399) | |
| 1-182, gnl|rheMac2|chrX (35934627-35934824) | |
| 1-182, gnl|rn3|chrX (24949370-24949172) | |
| 1-182, gnl|tetNig1|chr2 (9304481-9304287) | |
| 1-182, gnl|xenTro1|scaffold_16 (2359732-2359537) | |
| 434-972, gnl|bosTau2|chr3 (75179868-75179352) | |
| 434-972, gnl|Hg17|chrX (37765369-37764809) | |
| 434-972, gnl|Mm7|chrX (8472259-8471716) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-182, gnl|bosTau2|chrX (31391448-31391267) | |
| 1-182, gnl|canFam2|chrX (32893087-32893292) | |
| 1-182, gnl|danRer3|chrNA (241455768-241455961) | |
| 1-182, gnl|dasNov1|scaffold_51355 (39410-39223) | |
| 1-182, gnl|echTel1|scaffold_324669 (43393-43590) | |
| 1-182, gnl|fr1|chrUn (231563960-231564156) | |
| 1-182, gnl|galGal2|chr1 (106705540-106705346) | |
| 1-182, gnl|hg17|chrX (37775479-37775676) | |
| 1-182, gnl|Hg17|chrX (37775668-37775487) | |
| 1-182, gnl|loxAfr1|scaffold_3904 (118588-118391) | |
| 1-182, gnl|mm7|chrX (8487994-8488192) | |
| 1-182, gnl|Mm7|chrX (8488183-8488002) | |
| 1-182, gnl|monDom2|scaffold_29 (26806160-26805963) | |
| 1-182, gnl|oryCun1|scaffold_194648 (633-830) | |
| 1-182, gnl|panTro1|chrX (38967215-38967399) | |
| 1-182, gnl|rheMac2|chrX (35934627-35934824) | |
| 1-182, gnl|rn3|chrX (24949370-24949172) | |
| 1-182, gnl|tetNig1|chr2 (9304481-9304287) | |
| 1-182, gnl|xenTro1|scaffold_16 (2359732-2359537) | |
| 434-972, gnl|bosTau2|chr3 (75179868-75179352) | |
| 434-972, gnl|Hg17|chrX (37765369-37764809) | |
| 434-972, gnl|Mm7|chrX (8472259-8471716) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| csk (1.26671) | |
| cut (0.679694) | |
| aor (0.390549) | |
| eep (0.367692) | |
| jca (0.34188) | |
| ski (0.29347) | |
| ret (0.257467) | |
| nms (0.213858) | |
| nlu (0.191681) | |
| rec (0.17307) | |
| cje (0.165235) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| che (0.136314) | |
| ova (0.129132) | |
| bla (0.124347) | |
| tra (0.123092) | |
| cly (0.120642) | |
| eru (0.120048) | |
| jej (0.0989218) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csk (1.26671) | |
| cut (0.679694) | |
| aor (0.390549) | |
| eep (0.367692) | |
| jca (0.34188) | |
| ski (0.29347) | |
| ret (0.257467) | |
| nms (0.213858) | |
| nlu (0.191681) | |
| rec (0.17307) | |
| cje (0.165235) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| che (0.136314) | |
| ova (0.129132) | |
| bla (0.124347) | |
| tra (0.123092) | |
| cly (0.120642) | |
| eru (0.120048) | |
| jej (0.0989218) |