Non-Coding RNA Search

Ss1.1-Pig4-TMW8018O18.5

Sequence:


               
               GAGATTGCTCGTCGAACTTGTACGTTGTCCCTTTTAAAATATGTTTTCCTTTTTCTTGAA
ACTGTATAAAGTTTTTTTTTCCCCTTAGCATATGCCTCTTATATATAACAACTCATTTGT
ACAAGGTTTTTAAGTTTATATATAAAATGTGTATATATATATTTTTTGTTTCCCTTTTGG
ATTTTTTTTTTTTTTTTGCCGTATGAAACCCAGATGCCGCCAAATGGACATTAATAGTTG
CATTAAAGGATCAGTAGCATTAACAAACGTTGCTTTAAAAGCCATTCTGTAAAACAAGAC
TTGAAAATTAGTGAGGGGAATTTTAGCGACGCTGTATGAGCAGCAGTGGGAACGGTCAGT
CCCGTTACCCCTGTGGACCCACAGTCGAATGCCCTGCACCCTTAGGACATGGACTGACTG
TGTGCAAAACTTTATGTGCCAAAATTCTCAGTGACTTTAGCTTTCTCCCTCTTTTTGATG
CTGTAATTTTCGTTCATCATGTTTTGCTGTGATGTTACATAGGTAGATTTGTATGTAGTT
TTTAATGTCACCTATAACAAGATGTGTTTGGTAGCAGATTTTCCAGAAAGCATTTTAAAT
GAAGAGGTATAAACCCTTAAGGGCCAAAATTCTGTATATTAGATTACTCTTCAAGGAAAA
ACCAGCTGCTGCTTTTATGTACCTGTATGACATACAAGTAGGTAGCAGACTTTAAAAATA
AAAAAAACCTAGGCATGTTGATGTTACAAAATGCTGTATAAAGCTGAAACCTGTTCATTC
AGTGCCATTGTAGTTGACATGAAGCGATTGTAAAACTGTCTCCGATTTTTCTCTGGTTTA
TTAAAATGCTAACTATAACATTTTTTGTGAATACTTTGAATGTTTCCTAACAGTTGTGAT
GTTACTGTTCCGTTTTATGCTCTTATTCCAATTTCATTTTTAATGGTTTGGAAGCCATTT
TTGTAATGAATAAATGTTCATGCTGTACAGTATCTGTAGCATGCCGTTCTGGATTAATAA
AAGCAACTTAGTATGTGCAATAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGATTGCTCGTCGAACTTGTACGTTGTCCCTTTTAAAATATGTTTTCCTTTTTCTTGAA
ACTGTATAAAGTTTTTTTTTCCCCTTAGCATATGCCTCTTATATATAACAACTCATTTGT
ACAAGGTTTTTAAGTTTATATATAAAATGTGTATATATATATTTTTTGTTTCCCTTTTGG
ATTTTTTTTTTTTTTTTGCCGTATGAAACCCAGATGCCGCCAAATGGACATTAATAGTTG
CATTAAAGGATCAGTAGCATTAACAAACGTTGCTTTAAAAGCCATTCTGTAAAACAAGAC
TTGAAAATTAGTGAGGGGAATTTTAGCGACGCTGTATGAGCAGCAGTGGGAACGGTCAGT
CCCGTTACCCCTGTGGACCCACAGTCGAATGCCCTGCACCCTTAGGACATGGACTGACTG
TGTGCAAAACTTTATGTGCCAAAATTCTCAGTGACTTTAGCTTTCTCCCTCTTTTTGATG
CTGTAATTTTCGTTCATCATGTTTTGCTGTGATGTTACATAGGTAGATTTGTATGTAGTT
TTTAATGTCACCTATAACAAGATGTGTTTGGTAGCAGATTTTCCAGAAAGCATTTTAAAT
GAAGAGGTATAAACCCTTAAGGGCCAAAATTCTGTATATTAGATTACTCTTCAAGGAAAA
ACCAGCTGCTGCTTTTATGTACCTGTATGACATACAAGTAGGTAGCAGACTTTAAAAATA
AAAAAAACCTAGGCATGTTGATGTTACAAAATGCTGTATAAAGCTGAAACCTGTTCATTC
AGTGCCATTGTAGTTGACATGAAGCGATTGTAAAACTGTCTCCGATTTTTCTCTGGTTTA
TTAAAATGCTAACTATAACATTTTTTGTGAATACTTTGAATGTTTCCTAACAGTTGTGAT
GTTACTGTTCCGTTTTATGCTCTTATTCCAATTTCATTTTTAATGGTTTGGAAGCCATTT
TTGTAATGAATAAATGTTCATGCTGTACAGTATCTGTAGCATGCCGTTCTGGATTAATAA
AAGCAACTTAGTATGTGCAATAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               78-181, - strand, RNAz p=0.686452
               

               
               647-741, - strand, RNAz p=0.971081
               

               
               924-1035, + strand, RNAz p=0.933066

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               78-181, - strand, RNAz p=0.686452
               

               
               647-741, - strand, RNAz p=0.971081
               

               
               924-1035, + strand, RNAz p=0.933066

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1044, gnl|bosTau2|chr26 (22522203-22523248)
               

               
               1-1044, gnl|Hg17|chr10 (114916393-114917427)
               

               
               1-1044, gnl|Mm7|chr19 (55847533-55848635)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1044, gnl|bosTau2|chr26 (22522203-22523248)
               

               
               1-1044, gnl|Hg17|chr10 (114916393-114917427)
               

               
               1-1044, gnl|Mm7|chr19 (55847533-55848635)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               pro (0.512033)
               

               
               ece (0.45861)
               

               
               hyp (0.285673)
               

               
               ebs (0.236602)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               spc (0.113366)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               ece (0.45861)
               

               
               hyp (0.285673)
               

               
               ebs (0.236602)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               spc (0.113366)

	78-181, - strand, RNAz p=0.686452
	647-741, - strand, RNAz p=0.971081
	924-1035, + strand, RNAz p=0.933066

	1-1044, gnl\|bosTau2\|chr26 (22522203-22523248)
	1-1044, gnl\|Hg17\|chr10 (114916393-114917427)
	1-1044, gnl\|Mm7\|chr19 (55847533-55848635)

	pro (0.512033)
	ece (0.45861)
	hyp (0.285673)
	ebs (0.236602)
	mgp (0.230681)
	tes (0.207814)
	hea (0.204499)
	fli (0.202881)
	sag (0.182715)
	ill (0.175593)
	fbs (0.175346)
	fhi (0.169578)
	fat (0.147427)
	nmm (0.132802)
	kid (0.129735)
	ret (0.128733)
	ese (0.126502)
	spc (0.113366)