Non-Coding RNA Search

Ss1.1-Pig4-TMW8018P08.5

Sequence:


               
               TTGTTTCTGATCAATTCTATGCAACTCTCATGGTTCCTGTTGTTTTTAGTGTTAGCTGCC
AAATCACTCCACAGTGCTGGGGCTGGTGACTTGACTGACTGTGCGACTGGATTAATCATA
ATGTGGACAAATCTTATTTTGCTTAATGTGTCGTGTGTGTGTGTGTGGGTGTGTGTATAT
ATATTATATATATATAAATATCTTTTCCCGATGCACCCAGTTGACAGTGTTTAAACCCCG
GACTAGGACTGATCTCCACAACTTAATTAGGTGGTTATTTGGGCACTTAATTTCACTCAA
GGTTTGTCAGGCTCTGCTCTGCACCTGCTGTCGTGAGAGCTGTGAAGAGCTCTCTCACTT
CAAGGTTTCGAGTGTTTTTGCACAACAGGTCATACAAGTGAGAAAGACTCCGAGGGCGGT
GTGTGTGTGCGCGTGCACGCGTGTAACCATGAGGATGTGCAGGATGCCCCATCCTGCTGG
CCTGCATCCCTGCCTGGAGACCTAGGCCCCCCCCCCCCCCCCGGGGTGAGGCTGGGTGCA
AACCTCACTGTTCAGACGAGCTGCAAGTTCTCACTTTAGAAGTATGGAATGGAGGGTTTA
GCACCTTTTTTTTTTTAACAAAATAACGTTAGCCTTTTAATTTATATAGTGATACGCTGA
CAGGCTGTCTCGCAGACGACTTCCTCGTCTTCTCTGCGTGCAGTGTGGTTCCAAGAGGCA
CTGGTTTGTATATAAAGACACTTGGGTTGTTTCGTATCCCGTTTCCTGTCGCTGTATGAG
CGCCTGCCAAGGGCCCCTGTGATAAGGGAGGCAACAAGCGACAACCCCTGACCCCCGACC
ATCCCCTCCACTGCTTTCTGTCTTTCTTGTTCAGTTACCAAAACCGCTGTAAGCCCATCT
AAAACTAGGTGCGTGGACATTGTGCTAGATAGCTGCTGTGTGTCAACTTTATGAATTGAA
ATATAAACCAGTAAACTTGTATTACTATTTCTTTTGTTGGTTTTATTTTAACAGCATATT
CATTAAATATTTTGGTACAAACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTTTCTGATCAATTCTATGCAACTCTCATGGTTCCTGTTGTTTTTAGTGTTAGCTGCC
AAATCACTCCACAGTGCTGGGGCTGGTGACTTGACTGACTGTGCGACTGGATTAATCATA
ATGTGGACAAATCTTATTTTGCTTAATGTGTCGTGTGTGTGTGTGTGGGTGTGTGTATAT
ATATTATATATATATAAATATCTTTTCCCGATGCACCCAGTTGACAGTGTTTAAACCCCG
GACTAGGACTGATCTCCACAACTTAATTAGGTGGTTATTTGGGCACTTAATTTCACTCAA
GGTTTGTCAGGCTCTGCTCTGCACCTGCTGTCGTGAGAGCTGTGAAGAGCTCTCTCACTT
CAAGGTTTCGAGTGTTTTTGCACAACAGGTCATACAAGTGAGAAAGACTCCGAGGGCGGT
GTGTGTGTGCGCGTGCACGCGTGTAACCATGAGGATGTGCAGGATGCCCCATCCTGCTGG
CCTGCATCCCTGCCTGGAGACCTAGGCCCCCCCCCCCCCCCCGGGGTGAGGCTGGGTGCA
AACCTCACTGTTCAGACGAGCTGCAAGTTCTCACTTTAGAAGTATGGAATGGAGGGTTTA
GCACCTTTTTTTTTTTAACAAAATAACGTTAGCCTTTTAATTTATATAGTGATACGCTGA
CAGGCTGTCTCGCAGACGACTTCCTCGTCTTCTCTGCGTGCAGTGTGGTTCCAAGAGGCA
CTGGTTTGTATATAAAGACACTTGGGTTGTTTCGTATCCCGTTTCCTGTCGCTGTATGAG
CGCCTGCCAAGGGCCCCTGTGATAAGGGAGGCAACAAGCGACAACCCCTGACCCCCGACC
ATCCCCTCCACTGCTTTCTGTCTTTCTTGTTCAGTTACCAAAACCGCTGTAAGCCCATCT
AAAACTAGGTGCGTGGACATTGTGCTAGATAGCTGCTGTGTGTCAACTTTATGAATTGAA
ATATAAACCAGTAAACTTGTATTACTATTTCTTTTGTTGGTTTTATTTTAACAGCATATT
CATTAAATATTTTGGTACAAACAG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               3-1044, gnl|bosTau2|chr11 (75661421-75662451)
               

               
               3-1044, gnl|Hg17|chr9 (122945654-122946702)
               

               
               3-1044, gnl|Mm7|chr2 (37572746-37573748)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1044, gnl|bosTau2|chr11 (75661421-75662451)
               

               
               3-1044, gnl|Hg17|chr9 (122945654-122946702)
               

               
               3-1044, gnl|Mm7|chr2 (37572746-37573748)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               bla (0.248694)
               

               
               mcp (0.170648)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.248694)
               

               
               mcp (0.170648)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

	3-1044, gnl\|bosTau2\|chr11 (75661421-75662451)
	3-1044, gnl\|Hg17\|chr9 (122945654-122946702)
	3-1044, gnl\|Mm7\|chr2 (37572746-37573748)

	bla (0.248694)
	mcp (0.170648)
	lnt (0.142308)
	che (0.136314)
	ebs (0.118301)
	med (0.116252)
	jej (0.0989218)