Ss1.1-Pig4-TMW8018P09.5
|
TACAGACAAGTTATTTACTTCTTATGACCTTGGGCCCTCTATGCCCTGGAAAGTGGGGTG
GGCCAGGGGGCCGGGCCCAGCATGCACCCCCACTTCTTCGGGGGCTGACCCCTCCCCCAG
CTCAGCTGGGCCCTCTTGGGGCCACAGCGTCAGGCCAGTGGGGGCGGAGGTAGAGGTGGG
AGAGCGGGAAGGAGCCTGTTGGAGCCGCAATGAGGCAGACAGAAGCAGGGGGCACGGGGA
CAGGGACAGAGACCCAGAACACCTGTGGGGGGCCTCGCGGGCGCGGCCTGTCCACTGGAC
CGGGCCTCAGAGCAGGCGACAGGCGTTGCCCACGCTGTCGGCAGGGGTGTCGAGGTCATG
GCTGTAAGGGGAGTCCCAGTCCCTCAGAAAGACGACCTCTAGCTGGCTCCGCAGGCCACC
CCGCCCGTTCTGTGTCACCAGCAGCGAGGTGCCCGCCGTCTCAGTAAAGTAGCTGCCAGA
CCAGTTGGAGGTTCCAATGTAGGTGGCACGTTCAGTCACCATGTATTTGTTGTGGTTGAC
GCGGGAGTAAGGGATTCGGGCCTGGGCCTCATCCGCAGGGACCACGAAGAGTTTCACCTG
GATGTCAGAGTGGGTGTGGTTGTCCCGCAGGGCAGCCAGGGAGAGCAGGAAGGCCCGCAT
AGATGGGTCGGAGTGTCCCCAGCAGCTGACCAGCAGGCGCACCCTGACGCCCCGCTCGTA
GGCAGCCCGCCGCAGCCCGTCGTCGATGGCCGGCCAGAACCTGCGCGGGTGGGAGAACTC
CATGGTGGGCAGGTAGTTCATGACCGCAATATAGATGAAACTCCGGGCGTTGTCCACCAC
GTTGAGCAGGGCCTTGAGGTCTGGAGTGCGGCCACTCGGACACAGTGGTGGGGGCGCGCT
TGCCAGGTAGGCCAGAGCAGGGGTTCCATTGAGGCAGATTTCCATCGGTGTCTCTTGATT
GTAGCGGGTGTCATAGGGCCGGGGCCAGGTTGATGGGATGGAGCTGCCCGCCTGGCCCAG
GTACCAGTAGGCCTCGAAGATCTTGGTCAGGTCTCGAGCCAGGCAGCTGCAGTTGTACAT
GACCACGCCCAGCTCCTTGACCTGGGTCAGGGAGCGCCAGTCCATGTTGGCGCTGCCGAT
GTAGAAGTGGGTCTGGTCCACCACCCAGAACTTGGTGTGCAGGACGCCATGGGTCAGCTT
CTGCATGTCCACCATGCGGACCTGGGCACCGCTCTGCAGCAGGGCCTGCAGGTCCGCCTG
GGGCTGGGGCCCGTTGGGCTTGCTCACGGCAATTCGGACCTTCACACCTCGGGGAGCCAG
GGTCTGGAGCTGCCGGAGGACCTCCTCGCCCTGCTGAGCAGAGGGCTCCTGAGTGCGGGT
GTCGTTGTTGGTGAGGGTCCAGTAGAAGGAGGCGATGTCCAGGCTGCTGTGGGCACCGGC
AAGCAGGCCCAGCCAGGCCTGGCTGGTGGAGGGGTTGCCCATGGAGGCATTGGGGAAGTC
CAGGCCCTCGGGAATGCTCTCCACCAGCACTGCTTCGCAAGGGTCATAGCAGGGGGCTGG
GCGCTGGTTGGGCCCAAAGAGATGCAAGTCGCCGTATTCCCATAGAAACAGCTGAGTCAT
CAGGGCACCGAAGCCCACAACCGCCAGGATGAGGACCAGCAGGACCCAACGGGCTTTCTT
TTCTGCAGCCTTCCATGCCTCGATCTCATTCATGGGAAGTTCATTGGCGGGCTCCTCAGC
AGGCACCTTCAGCTCCTGGTACATCAGTTTAGGCTTCATCTTGCTAGGCAGCCAGGGGAT
ACGCAGATCCCAGGCGGGAAAGTGGGTGTGTCAGGGTCTCCAAACCCAGCAGGGCCTCGG
TGTTACTCCGCAGGCGGCAGCTGCTACCTCCACGGGGCCCCAGCTTCT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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TACAGACAAGTTATTTACTTCTTATGACCTTGGGCCCTCTATGCCCTGGAAAGTGGGGTG
GGCCAGGGGGCCGGGCCCAGCATGCACCCCCACTTCTTCGGGGGCTGACCCCTCCCCCAG
CTCAGCTGGGCCCTCTTGGGGCCACAGCGTCAGGCCAGTGGGGGCGGAGGTAGAGGTGGG
AGAGCGGGAAGGAGCCTGTTGGAGCCGCAATGAGGCAGACAGAAGCAGGGGGCACGGGGA
CAGGGACAGAGACCCAGAACACCTGTGGGGGGCCTCGCGGGCGCGGCCTGTCCACTGGAC
CGGGCCTCAGAGCAGGCGACAGGCGTTGCCCACGCTGTCGGCAGGGGTGTCGAGGTCATG
GCTGTAAGGGGAGTCCCAGTCCCTCAGAAAGACGACCTCTAGCTGGCTCCGCAGGCCACC
CCGCCCGTTCTGTGTCACCAGCAGCGAGGTGCCCGCCGTCTCAGTAAAGTAGCTGCCAGA
CCAGTTGGAGGTTCCAATGTAGGTGGCACGTTCAGTCACCATGTATTTGTTGTGGTTGAC
GCGGGAGTAAGGGATTCGGGCCTGGGCCTCATCCGCAGGGACCACGAAGAGTTTCACCTG
GATGTCAGAGTGGGTGTGGTTGTCCCGCAGGGCAGCCAGGGAGAGCAGGAAGGCCCGCAT
AGATGGGTCGGAGTGTCCCCAGCAGCTGACCAGCAGGCGCACCCTGACGCCCCGCTCGTA
GGCAGCCCGCCGCAGCCCGTCGTCGATGGCCGGCCAGAACCTGCGCGGGTGGGAGAACTC
CATGGTGGGCAGGTAGTTCATGACCGCAATATAGATGAAACTCCGGGCGTTGTCCACCAC
GTTGAGCAGGGCCTTGAGGTCTGGAGTGCGGCCACTCGGACACAGTGGTGGGGGCGCGCT
TGCCAGGTAGGCCAGAGCAGGGGTTCCATTGAGGCAGATTTCCATCGGTGTCTCTTGATT
GTAGCGGGTGTCATAGGGCCGGGGCCAGGTTGATGGGATGGAGCTGCCCGCCTGGCCCAG
GTACCAGTAGGCCTCGAAGATCTTGGTCAGGTCTCGAGCCAGGCAGCTGCAGTTGTACAT
GACCACGCCCAGCTCCTTGACCTGGGTCAGGGAGCGCCAGTCCATGTTGGCGCTGCCGAT
GTAGAAGTGGGTCTGGTCCACCACCCAGAACTTGGTGTGCAGGACGCCATGGGTCAGCTT
CTGCATGTCCACCATGCGGACCTGGGCACCGCTCTGCAGCAGGGCCTGCAGGTCCGCCTG
GGGCTGGGGCCCGTTGGGCTTGCTCACGGCAATTCGGACCTTCACACCTCGGGGAGCCAG
GGTCTGGAGCTGCCGGAGGACCTCCTCGCCCTGCTGAGCAGAGGGCTCCTGAGTGCGGGT
GTCGTTGTTGGTGAGGGTCCAGTAGAAGGAGGCGATGTCCAGGCTGCTGTGGGCACCGGC
AAGCAGGCCCAGCCAGGCCTGGCTGGTGGAGGGGTTGCCCATGGAGGCATTGGGGAAGTC
CAGGCCCTCGGGAATGCTCTCCACCAGCACTGCTTCGCAAGGGTCATAGCAGGGGGCTGG
GCGCTGGTTGGGCCCAAAGAGATGCAAGTCGCCGTATTCCCATAGAAACAGCTGAGTCAT
CAGGGCACCGAAGCCCACAACCGCCAGGATGAGGACCAGCAGGACCCAACGGGCTTTCTT
TTCTGCAGCCTTCCATGCCTCGATCTCATTCATGGGAAGTTCATTGGCGGGCTCCTCAGC
AGGCACCTTCAGCTCCTGGTACATCAGTTTAGGCTTCATCTTGCTAGGCAGCCAGGGGAT
ACGCAGATCCCAGGCGGGAAAGTGGGTGTGTCAGGGTCTCCAAACCCAGCAGGGCCTCGG
TGTTACTCCGCAGGCGGCAGCTGCTACCTCCACGGGGCCCCAGCTTCT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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595-775, gnl|bosTau2|chr18 (41434635-41434456) |
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595-775, gnl|Hg17|chr19 (45574521-45574331) |
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595-775, gnl|Mm7|chr7 (24454126-24454306) |
| |
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902-1104, gnl|bosTau2|chr18 (41432578-41432376) |
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902-1104, gnl|Hg17|chr19 (45569619-45569417) |
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902-1104, gnl|Mm7|chr7 (24458060-24458262) |
| |
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1350-1534, gnl|bosTau2|chr18 (41429006-41428822) |
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1350-1534, gnl|Hg17|chr19 (45565627-45565443) |
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1350-1534, gnl|Mm7|chr7 (24461563-24461747) |
| |
|
1622-1754, gnl|bosTau2|chr18 (41428160-41428027) |
|
1622-1754, gnl|canFam2|chr1 (116221265-116221029) |
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1622-1754, gnl|dasNov1|scaffold_36599 (12366-12098) |
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1622-1754, gnl|echTel1|scaffold_313206 (57052-56832) |
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1622-1754, gnl|hg17|chr19 (45564216-45564450) |
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1622-1754, gnl|Hg17|chr19 (45564484-45564355) |
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1622-1754, gnl|loxAfr1|scaffold_230176 (837-586) |
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1622-1754, gnl|mm7|chr7 (24462611-24462376) |
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1622-1754, gnl|Mm7|chr7 (24462342-24462469) |
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1622-1754, gnl|panTro1|chr20 (42519852-42520086) |
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1622-1754, gnl|rheMac2|chr19 (46725590-46725824) |
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1622-1754, gnl|rn3|chr1 (82702062-82701821) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
595-775, gnl|bosTau2|chr18 (41434635-41434456) |
|
595-775, gnl|Hg17|chr19 (45574521-45574331) |
|
595-775, gnl|Mm7|chr7 (24454126-24454306) |
| |
|
902-1104, gnl|bosTau2|chr18 (41432578-41432376) |
|
902-1104, gnl|Hg17|chr19 (45569619-45569417) |
|
902-1104, gnl|Mm7|chr7 (24458060-24458262) |
| |
|
1350-1534, gnl|bosTau2|chr18 (41429006-41428822) |
|
1350-1534, gnl|Hg17|chr19 (45565627-45565443) |
|
1350-1534, gnl|Mm7|chr7 (24461563-24461747) |
| |
|
1622-1754, gnl|bosTau2|chr18 (41428160-41428027) |
|
1622-1754, gnl|canFam2|chr1 (116221265-116221029) |
|
1622-1754, gnl|dasNov1|scaffold_36599 (12366-12098) |
|
1622-1754, gnl|echTel1|scaffold_313206 (57052-56832) |
|
1622-1754, gnl|hg17|chr19 (45564216-45564450) |
|
1622-1754, gnl|Hg17|chr19 (45564484-45564355) |
|
1622-1754, gnl|loxAfr1|scaffold_230176 (837-586) |
|
1622-1754, gnl|mm7|chr7 (24462611-24462376) |
|
1622-1754, gnl|Mm7|chr7 (24462342-24462469) |
|
1622-1754, gnl|panTro1|chr20 (42519852-42520086) |
|
1622-1754, gnl|rheMac2|chr19 (46725590-46725824) |
|
1622-1754, gnl|rn3|chr1 (82702062-82701821) |
|
hyp (0.999857) |
|
fce (0.543183) |
|
csp (0.483559) |
|
pla (0.401016) |
|
cov (0.396458) |
|
cga (0.279096) |
|
ese (0.253004) |
|
eep (0.245128) |
|
cly (0.241284) |
|
pgl (0.236967) |
|
ebs (0.236602) |
|
ece (0.229305) |
|
nep (0.183925) |
|
fty (0.17584) |
|
cag (0.151194) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
nca (0.136874) |
|
ute (0.132784) |
|
eru (0.120048) |
|
clu (0.119646) |
|
ecc (0.115035) |
|
jca (0.11396) |
|
hyp (0.999857) |
|
fce (0.543183) |
|
csp (0.483559) |
|
pla (0.401016) |
|
cov (0.396458) |
|
cga (0.279096) |
|
ese (0.253004) |
|
eep (0.245128) |
|
cly (0.241284) |
|
pgl (0.236967) |
|
ebs (0.236602) |
|
ece (0.229305) |
|
nep (0.183925) |
|
fty (0.17584) |
|
cag (0.151194) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
nca (0.136874) |
|
ute (0.132784) |
|
eru (0.120048) |
|
clu (0.119646) |
|
ecc (0.115035) |
|
jca (0.11396) |
