Non-Coding RNA Search

Ss1.1-Pig4-TMW8019B03.5.5

Sequence:


               
               CTCCTACCCCAATAACCTGTTGAGGAATCTGGCTCGTGAGGGGGCCAACTATGCCCTGGT
AATCGACGTGGACATGGTGCCCAGCGAGGGGCTGTGGAGAGGCCTGCGGGAAATGCTGGA
TCAGAGCAAGCAGTGGGCGGGCACAGCGCTGGTGGTGCCCGCCTTTGAGATCCGTCGAGC
TCGCCGCATGCCCACTAACAAAAACGAGCTGCTGCAGCTCTACCAGGTGGGCGAGGTGCG
GCCTTTCTATTATGGGCTGTGCACGCCCTGCCAAGCGCCCACCAACTACTCCCGCTGGGT
CAACCTGCCAGAAGAGACCTTGCTGAGGCCTTCCTATGTGGTGCCCTGGCAGGACCCCTG
GGAGCCATTCTACGTGGCCGGAGGCAAGGTGCCCACTTTCGACGAGCGCTTTCGGCAGTA
TGGCTTCAATCGCATCAGCCAGGCTTGTGAGTTGCACGTGGCAGGATTCGATTTTGAGGT
GCTGAACGAAGGTTTCCTGGTTCATAAAGGCTTCAAAGAAGCTTTGAAATTCCACCCCCA
AAAGGAGGCCGAAAATCAGCACAATAAGATCCTTTACCGTCAGTTCAAGCAGGAGTTGAA
GGCCAAGTACCCCGACTCCCCACGTCACTGCTGAGCCCTTCCTTCCCCTAGTCTGAGAAG
TCTCAGCCTCCTCCCTCCTTAGGCCGCCCCTCAGGCCTGACTGGGGTAAGAAACGTCACT
CCACTTTACAGTGGTAGCTGTGGTGTTTGAACACTGGACTTGAATATGGGGTGCTGGGAT
CAAGTCCTAGCTTAACCACTAACTAGCTGTGTGGCCTTGAGCAAATCCCGTTCTCTCTCT
GAGCCTCAGTTACCCCGTCTGTAAAAGGGAGGTGAGAATACCTACCTCACAGAACTGCTG
GGAGGCTCAGATGAGATGCTATATGTGAAAACATTCTGTAAGCTTCGTACAAATGTGAAG
TATTATTAATATTATTACAGTATTATTATTGTTGTTATTATTATTGTTATTATTATTAAC
AATCTTGGGTGGGTGAGCAGTAGGAGAGCAAAAAGTATGAATGGGGGCAGAGCTGAGAAG
TCTGAGTAGTTAACAAAATGGGCTTTTTGGAAAGAAATCAGATGAAGGCGTTGAATTTAG
TTCTTAGCTTTTGGGCAGAAGCCGAAACTTCCTGGTGTCTTAGGCCTCCGTCCCGGGGGC
TCTAGAGAAGGGAAGGATCTGCAGGTTCTGTGCGTCTGAGATCTGTACCCTTGAATAGCC
TGGGCTGGGTGATTTGCCTACCGACTACAATGTGTAAATAAATGAGTGTTCACACCTAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCTACCCCAATAACCTGTTGAGGAATCTGGCTCGTGAGGGGGCCAACTATGCCCTGGT
AATCGACGTGGACATGGTGCCCAGCGAGGGGCTGTGGAGAGGCCTGCGGGAAATGCTGGA
TCAGAGCAAGCAGTGGGCGGGCACAGCGCTGGTGGTGCCCGCCTTTGAGATCCGTCGAGC
TCGCCGCATGCCCACTAACAAAAACGAGCTGCTGCAGCTCTACCAGGTGGGCGAGGTGCG
GCCTTTCTATTATGGGCTGTGCACGCCCTGCCAAGCGCCCACCAACTACTCCCGCTGGGT
CAACCTGCCAGAAGAGACCTTGCTGAGGCCTTCCTATGTGGTGCCCTGGCAGGACCCCTG
GGAGCCATTCTACGTGGCCGGAGGCAAGGTGCCCACTTTCGACGAGCGCTTTCGGCAGTA
TGGCTTCAATCGCATCAGCCAGGCTTGTGAGTTGCACGTGGCAGGATTCGATTTTGAGGT
GCTGAACGAAGGTTTCCTGGTTCATAAAGGCTTCAAAGAAGCTTTGAAATTCCACCCCCA
AAAGGAGGCCGAAAATCAGCACAATAAGATCCTTTACCGTCAGTTCAAGCAGGAGTTGAA
GGCCAAGTACCCCGACTCCCCACGTCACTGCTGAGCCCTTCCTTCCCCTAGTCTGAGAAG
TCTCAGCCTCCTCCCTCCTTAGGCCGCCCCTCAGGCCTGACTGGGGTAAGAAACGTCACT
CCACTTTACAGTGGTAGCTGTGGTGTTTGAACACTGGACTTGAATATGGGGTGCTGGGAT
CAAGTCCTAGCTTAACCACTAACTAGCTGTGTGGCCTTGAGCAAATCCCGTTCTCTCTCT
GAGCCTCAGTTACCCCGTCTGTAAAAGGGAGGTGAGAATACCTACCTCACAGAACTGCTG
GGAGGCTCAGATGAGATGCTATATGTGAAAACATTCTGTAAGCTTCGTACAAATGTGAAG
TATTATTAATATTATTACAGTATTATTATTGTTGTTATTATTATTGTTATTATTATTAAC
AATCTTGGGTGGGTGAGCAGTAGGAGAGCAAAAAGTATGAATGGGGGCAGAGCTGAGAAG
TCTGAGTAGTTAACAAAATGGGCTTTTTGGAAAGAAATCAGATGAAGGCGTTGAATTTAG
TTCTTAGCTTTTGGGCAGAAGCCGAAACTTCCTGGTGTCTTAGGCCTCCGTCCCGGGGGC
TCTAGAGAAGGGAAGGATCTGCAGGTTCTGTGCGTCTGAGATCTGTACCCTTGAATAGCC
TGGGCTGGGTGATTTGCCTACCGACTACAATGTGTAAATAAATGAGTGTTCACACCTAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12805437|gb|AAH02191.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12805437|gb|AAH02191.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               798-955, + strand, RNAz p=0.818025

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               798-955, + strand, RNAz p=0.818025

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_006876, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_006876, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               440-1318, gnl|bosTau2|chr29 (37172164-37173036)
               

               
               440-1318, gnl|Hg17|chr11 (65870290-65869421)
               

               
               440-1318, gnl|Mm7|chr19 (4935110-4935937)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               440-1318, gnl|bosTau2|chr29 (37172164-37173036)
               

               
               440-1318, gnl|Hg17|chr11 (65870290-65869421)
               

               
               440-1318, gnl|Mm7|chr19 (4935110-4935937)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               fcc (0.593354)
               

               
               fbs (0.350693)
               

               
               cli (0.305623)
               

               
               hyp (0.285673)
               

               
               ova (0.258264)
               

               
               ece (0.229305)
               

               
               nlu (0.191681)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.593354)
               

               
               fbs (0.350693)
               

               
               cli (0.305623)
               

               
               hyp (0.285673)
               

               
               ova (0.258264)
               

               
               ece (0.229305)
               

               
               nlu (0.191681)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	440-1318, gnl\|bosTau2\|chr29 (37172164-37173036)
	440-1318, gnl\|Hg17\|chr11 (65870290-65869421)
	440-1318, gnl\|Mm7\|chr19 (4935110-4935937)

	fcc (0.593354)
	fbs (0.350693)
	cli (0.305623)
	hyp (0.285673)
	ova (0.258264)
	ece (0.229305)
	nlu (0.191681)
	duo (0.172801)
	mcp (0.170648)
	fhi (0.169578)
	eli (0.151814)
	che (0.136314)
	ssp (0.13552)
	cov (0.132153)
	ecc (0.115035)
	jca (0.11396)
	cty (0.10408)
	ldo (0.0970026)