Non-Coding RNA Search

Ss1.1-Pig4-TMW8019B10.5.5

Sequence:


               
               GGGCAACACCTACCCCCAGTGGCAACCACCTGCTCCTCATGACCCAAATAAAGCTGCAGC
AGCTGCCGCAGACCCCAATGCTGCCTGGGCCGCCTACTATTCACACTACTACCAGCAGCC
CCCAGGCCCTGTGCCAGGCCCTGCACCGGCCCCCGCGGCCCCCCCCACCCAGGGTGAGCC
TCCTCAGCCCCCACCTGCTGGCCAATCAGACTACACTAAGGCCTGGGAAGAGTATTACAA
AAAGATTGGCCAGCAGCCCCAGCAGCCTGGAGCACCCCCACAGCAGGACTACACAAAGGC
CTGGGAAGAGTACTACAAGAAGCAGGCTCAAGTGGCCACCGGAGGGGGTCCAGGAGCACC
CCCCGGCTCCCAGCCAGACTACAGCGCCGCCTGGGCGGAATATTACAGACAGCAAGCCGC
TTACTACGGACAGACTCCAGGTCCTGGCGGCCCCCAGCCTCCACCCACTCTTCCCTCTCC
GCAGGCTCAATGAATCGAATGAATGTGAACTTCTTCATCTGTGAAAATCTTTATTATTTT
TTTTCCATTTTGTTCTGTTTGGGGGCTTTTTTTGTTTGTTTTTTTTTTGTTTGTTTGTTT
TTTTTTTTTTCTGTTTGTTTGTCGAGAGAGCGATGGCTGCCAAGGGGGGTGCCGGGGGAG
CCCTCACTGTGAGTGGCTTGCAGGTCATGGCACGGGCTATGCCAGGCTCTCGCTCTCTCG
CTCATTCTGTGTGTCTCACATGCTTTTTTTCTTTCAAAATTGGGATCCTTCATGTTGAGC
CAGCCATAGAAGATAGCGAGAACTAAATCTCTGCAAAAAAAAATAAAAAATAAAAAAATA
AAAATAAAAAAGCAAAACCTATAAAATTATATATATATATTAAAAAAAAAAATCTATCGC
CCTCCTCTCCCCTAGCCTTCCTGAAACTGCCTCTTTTCAGGAAAAAGCAATTCATTCACT
CCCTACTACCATCCTTGGCCCTCTTCATGTTTTTAAAATAAACTTTTAAAAAGGAAAAAA
GTCATTCTTGCTATTTCTTTTTTTTTTTTTTAGTTAGAGTTGGAACATTCCTTGGACCAG
GTATTGATATTGCAGGAAAAAACTGCCCCTGCCCCACATCAGGCAGCCCCTCGGCCTCTC
TGCTCCTCCTCTCGCTCTCCTTCCGCCCCAGCTCATTTCTCTTCCCCCCGCCCCGCCCAC
CCTGCGGTTCCTCCCGCCCCCGACCCCCAGGACTGGTCTGTCGTGTTTCATCTGTTCAAG
AGGACATTGAAACTGAAAACAAATTGAGAACAAAACAAAAAATTGTATGGCAGTTTTTAC
TTTTTATCGCTCGTTTTTAACTTCACAAATAAATGATAACAAAACCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCAACACCTACCCCCAGTGGCAACCACCTGCTCCTCATGACCCAAATAAAGCTGCAGC
AGCTGCCGCAGACCCCAATGCTGCCTGGGCCGCCTACTATTCACACTACTACCAGCAGCC
CCCAGGCCCTGTGCCAGGCCCTGCACCGGCCCCCGCGGCCCCCCCCACCCAGGGTGAGCC
TCCTCAGCCCCCACCTGCTGGCCAATCAGACTACACTAAGGCCTGGGAAGAGTATTACAA
AAAGATTGGCCAGCAGCCCCAGCAGCCTGGAGCACCCCCACAGCAGGACTACACAAAGGC
CTGGGAAGAGTACTACAAGAAGCAGGCTCAAGTGGCCACCGGAGGGGGTCCAGGAGCACC
CCCCGGCTCCCAGCCAGACTACAGCGCCGCCTGGGCGGAATATTACAGACAGCAAGCCGC
TTACTACGGACAGACTCCAGGTCCTGGCGGCCCCCAGCCTCCACCCACTCTTCCCTCTCC
GCAGGCTCAATGAATCGAATGAATGTGAACTTCTTCATCTGTGAAAATCTTTATTATTTT
TTTTCCATTTTGTTCTGTTTGGGGGCTTTTTTTGTTTGTTTTTTTTTTGTTTGTTTGTTT
TTTTTTTTTTCTGTTTGTTTGTCGAGAGAGCGATGGCTGCCAAGGGGGGTGCCGGGGGAG
CCCTCACTGTGAGTGGCTTGCAGGTCATGGCACGGGCTATGCCAGGCTCTCGCTCTCTCG
CTCATTCTGTGTGTCTCACATGCTTTTTTTCTTTCAAAATTGGGATCCTTCATGTTGAGC
CAGCCATAGAAGATAGCGAGAACTAAATCTCTGCAAAAAAAAATAAAAAATAAAAAAATA
AAAATAAAAAAGCAAAACCTATAAAATTATATATATATATTAAAAAAAAAAATCTATCGC
CCTCCTCTCCCCTAGCCTTCCTGAAACTGCCTCTTTTCAGGAAAAAGCAATTCATTCACT
CCCTACTACCATCCTTGGCCCTCTTCATGTTTTTAAAATAAACTTTTAAAAAGGAAAAAA
GTCATTCTTGCTATTTCTTTTTTTTTTTTTTAGTTAGAGTTGGAACATTCCTTGGACCAG
GTATTGATATTGCAGGAAAAAACTGCCCCTGCCCCACATCAGGCAGCCCCTCGGCCTCTC
TGCTCCTCCTCTCGCTCTCCTTCCGCCCCAGCTCATTTCTCTTCCCCCCGCCCCGCCCAC
CCTGCGGTTCCTCCCGCCCCCGACCCCCAGGACTGGTCTGTCGTGTTTCATCTGTTCAAG
AGGACATTGAAACTGAAAACAAATTGAGAACAAAACAAAAAATTGTATGGCAGTTTTTAC
TTTTTATCGCTCGTTTTTAACTTCACAAATAAATGATAACAAAACCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6P2L2_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6P2L2_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               45-203, - strand, RNAz p=0.839424

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               45-203, - strand, RNAz p=0.839424

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               45-249, gnl|bosTau2|chr7 (13953937-13954141)
               

               
               45-249, gnl|Hg17|chr19 (6366747-6366544)
               

               
               45-249, gnl|Mm7|chr17 (55234551-55234347)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               45-249, gnl|bosTau2|chr7 (13953937-13954141)
               

               
               45-249, gnl|Hg17|chr19 (6366747-6366544)
               

               
               45-249, gnl|Mm7|chr17 (55234551-55234347)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               eru (0.480192)
               

               
               amn (0.417711)
               

               
               elu (0.385356)
               

               
               eep (0.367692)
               

               
               cov (0.264306)
               

               
               bla (0.248694)
               

               
               aor (0.195274)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.480192)
               

               
               amn (0.417711)
               

               
               elu (0.385356)
               

               
               eep (0.367692)
               

               
               cov (0.264306)
               

               
               bla (0.248694)
               

               
               aor (0.195274)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	45-249, gnl\|bosTau2\|chr7 (13953937-13954141)
	45-249, gnl\|Hg17\|chr19 (6366747-6366544)
	45-249, gnl\|Mm7\|chr17 (55234551-55234347)

	eru (0.480192)
	amn (0.417711)
	elu (0.385356)
	eep (0.367692)
	cov (0.264306)
	bla (0.248694)
	aor (0.195274)
	fbs (0.175346)
	sin (0.174948)
	mcp (0.170648)
	eye (0.170503)
	cut (0.169924)
	cje (0.165235)
	nco (0.161734)
	csp (0.161186)
	cli (0.152812)
	cag (0.151194)
	ute (0.132784)
	cly (0.120642)
	spc (0.113366)
	eje (0.0988338)