Non-Coding RNA Search

Ss1.1-Pig4-TMW8019B16.5.5

Sequence:


               
               GGACCTCATATTTTGTTTAGAAAATGAACGCGAGACAAGCCATTCACTGTTGCTCTACAA
AGCATTCCTTAAGTAGCTCGGACGCGGCCTCTTAGGTGGAGACGCCTGGGGACTTTTTAT
ATATTTGCAGATGACGCCTTTTTGTAACAAGCAAATGGGATATTGTTTAAAAACAGCCAC
CTCTTTACAACGGAGCAGTTTTATATTCCTGTTTCTAAGTCGGCTCTTCCGTACGGAGGA
AAACACGTTTCTCTAACAGAGACGCGGAGGCCCGTGGGTTCTCTTAAAGGACAGTCAAAT
CTTAACTCATCTTTGATTGAGTGGCCTTCTTGCCAAACAAGCCATATCTAAAACTGATGG
AATCGTTTAGCAAATAACTAGCTGCCCTCTGTCACCTCATAGCGGTTTCTCCATCATTTG
TGCATTTGGTTTAGTTCAGCCCAACTTACCATGTAGGTGTGTGTCTACAGCCAGTGACCT
CATTTCATTTCTTTTATTTTTGTGTTAGTCAGTTGGCAAAGCAAACTGATTTTTTTGACT
ATTTATCTCCCCCTCCCCCGCCCTCCACCGAGGCTCCCGCGAAGCAGGCGGCCCATCGCC
CGCCCGCCCGCTGTGTGGGCTCACCCTTCCTGCTTCACGGGGCCCAGCAGCGTGGCTCCT
TCTGAATGTGTGGTCAGCACCTGTACAAATGCATTTTATTTGCTATAGTTTGTAAAGCTG
TAAAGTTAAAAGAAATGAAAACCTTTTCAGCATAAATCTATTTTACTTGCACTGTGTTTT
TTAGCTAAAAGTGAAAATTTAGATGAAATAAAATCAAAGTTGAGAAGAATCATCAAAAGA
CTGTTTCTCAGTGTGAATCAAGTGTTGAAAAATGGTTGGTGTATTTTGTCAGTAATTGTA
CATAATTTTTGGCACATAACATGAAAATGGCTATGTAACTATAATTATTTTGCTAAGAGA
CTGTATGCAAAAGCTCTGGGCCCACTTTACAGGCGTCCAGAGCAGAAGCCCTTTCTTTGT
ACCTATTTTTTTATTACAAATATACTAATTGGTTCTTTATATTTTCAGAGGTTATTGTAT
TAAATTGTCTATTGATAGTACTTTTATGATTGTAAATACCTTGGCTTTCTCTGTGTGAAT
TCTCACCTTAGACTTTCTCTGCGCGCGTGAACTGAATGCTGATCAGTATTTTTTATCAAC
ACCTGAAAACTGTTACGCCTTTTATTTCGTCTTTTAGGAAATCCCTGTCTTTCCATTTTT
TCATGTAAATTTTGCACAGTTACTTGTTCATATGTAAATATTTTACTTTCAGAAATGAAG
TTTTTAATTGCTATTGTTTTATATAGGATTGAAAGAAAATTAACTCCTTTATTAAAAGCA
AATTTATCTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACCTCATATTTTGTTTAGAAAATGAACGCGAGACAAGCCATTCACTGTTGCTCTACAA
AGCATTCCTTAAGTAGCTCGGACGCGGCCTCTTAGGTGGAGACGCCTGGGGACTTTTTAT
ATATTTGCAGATGACGCCTTTTTGTAACAAGCAAATGGGATATTGTTTAAAAACAGCCAC
CTCTTTACAACGGAGCAGTTTTATATTCCTGTTTCTAAGTCGGCTCTTCCGTACGGAGGA
AAACACGTTTCTCTAACAGAGACGCGGAGGCCCGTGGGTTCTCTTAAAGGACAGTCAAAT
CTTAACTCATCTTTGATTGAGTGGCCTTCTTGCCAAACAAGCCATATCTAAAACTGATGG
AATCGTTTAGCAAATAACTAGCTGCCCTCTGTCACCTCATAGCGGTTTCTCCATCATTTG
TGCATTTGGTTTAGTTCAGCCCAACTTACCATGTAGGTGTGTGTCTACAGCCAGTGACCT
CATTTCATTTCTTTTATTTTTGTGTTAGTCAGTTGGCAAAGCAAACTGATTTTTTTGACT
ATTTATCTCCCCCTCCCCCGCCCTCCACCGAGGCTCCCGCGAAGCAGGCGGCCCATCGCC
CGCCCGCCCGCTGTGTGGGCTCACCCTTCCTGCTTCACGGGGCCCAGCAGCGTGGCTCCT
TCTGAATGTGTGGTCAGCACCTGTACAAATGCATTTTATTTGCTATAGTTTGTAAAGCTG
TAAAGTTAAAAGAAATGAAAACCTTTTCAGCATAAATCTATTTTACTTGCACTGTGTTTT
TTAGCTAAAAGTGAAAATTTAGATGAAATAAAATCAAAGTTGAGAAGAATCATCAAAAGA
CTGTTTCTCAGTGTGAATCAAGTGTTGAAAAATGGTTGGTGTATTTTGTCAGTAATTGTA
CATAATTTTTGGCACATAACATGAAAATGGCTATGTAACTATAATTATTTTGCTAAGAGA
CTGTATGCAAAAGCTCTGGGCCCACTTTACAGGCGTCCAGAGCAGAAGCCCTTTCTTTGT
ACCTATTTTTTTATTACAAATATACTAATTGGTTCTTTATATTTTCAGAGGTTATTGTAT
TAAATTGTCTATTGATAGTACTTTTATGATTGTAAATACCTTGGCTTTCTCTGTGTGAAT
TCTCACCTTAGACTTTCTCTGCGCGCGTGAACTGAATGCTGATCAGTATTTTTTATCAAC
ACCTGAAAACTGTTACGCCTTTTATTTCGTCTTTTAGGAAATCCCTGTCTTTCCATTTTT
TCATGTAAATTTTGCACAGTTACTTGTTCATATGTAAATATTTTACTTTCAGAAATGAAG
TTTTTAATTGCTATTGTTTTATATAGGATTGAAAGAAAATTAACTCCTTTATTAAAAGCA
AATTTATCTGTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               431-548, + strand, RNAz p=0.577205

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               431-548, + strand, RNAz p=0.577205

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_003185, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_003185, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1392, gnl|bosTau2|chr13 (36292654-36294044)
               

               
               1-1392, gnl|Hg17|chr20 (59984694-59983249)
               

               
               1-1392, gnl|Mm7|chr2 (180414427-180413065)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1392, gnl|bosTau2|chr13 (36292654-36294044)
               

               
               1-1392, gnl|Hg17|chr20 (59984694-59983249)
               

               
               1-1392, gnl|Mm7|chr2 (180414427-180413065)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               cbe (0.717703)
               

               
               lin (0.436808)
               

               
               thg (0.380373)
               

               
               spl (0.286369)
               

               
               aor (0.195274)
               

               
               nco (0.161734)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.717703)
               

               
               lin (0.436808)
               

               
               thg (0.380373)
               

               
               spl (0.286369)
               

               
               aor (0.195274)
               

               
               nco (0.161734)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	1-1392, gnl\|bosTau2\|chr13 (36292654-36294044)
	1-1392, gnl\|Hg17\|chr20 (59984694-59983249)
	1-1392, gnl\|Mm7\|chr2 (180414427-180413065)

	cbe (0.717703)
	lin (0.436808)
	thg (0.380373)
	spl (0.286369)
	aor (0.195274)
	nco (0.161734)
	lun (0.150489)
	isp (0.150376)
	bfe (0.149858)
	liv (0.146284)
	hyp (0.142837)
	che (0.136314)
	kid (0.129735)
	ret (0.128733)
	sug (0.127291)
	tra (0.123092)
	cly (0.120642)
	ebs (0.118301)
	ecc (0.115035)
	ldo (0.0970026)