Ss1.1-Pig4-TMW8019B17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGCAGCCGCCGCGGGAGGCGTCCGCAACAAGATGAAGCTCATCATCCTGGACCACTACT CCCAGGCCAGTGAGTGGGCGGCCAAATACATCAGGAACCGCATCATCCAGTTTAACCCAG GGCCAGACAAGTACTTCACGCTGGGGCTCCCCACCGGGAGCACCCCCCTCGGCTGCTACA AGAAGCTGATCGAGTACTACAGGAATGGAGACCTGTCCTTCCAATACGTCAAGACTTTCA ACATGGACGAGTACGTGGGCCTCCCCCGAGACCACCCCGAGAGCTACCACTCCTTCATGT GGAACAACTTCTTCAAGCACATCGACATCCGCCCGGAAAACACGCACATTCTGGACGGGA ACGCGGCCGACCTGCAGGCCGAGTGCGACGCCTTCGAGGAGAAGATCCAGGCCGCGGGCG GGGTCGAGCTGTTTGTCGGAGGCATCGGCCCTGATGGACACATCGCCTTCAACGAGCCGG GCTCCAGTCTGGTGTCCAGGACGCGGGTGAAGACGCTGGCCATGGACACCATCCTGGCCA ACGCTCGGTTCTTCGATGGAGATCTCGCCAAGGTGCCCACCATGGCCCTGACAGTGGGCG TGGGCACCGTCATGGACGCCAGAGAGGTGATGATTCTCATCACGGGCGCCCACAAGGCCT TTGCTCTGTACAAAGCCATCGAGGAGGGCGTGAGCCACATGTGGACCGTGTCGGCCTTCC AGCAGCACCCCCGCACGGTGTTCGTGTGCGACGAGGACGCCACCCTGGAGCTGAAAGTGA AAACCGTCAAGTATTTCAAAGGTTTAATGCTTGTTCATAACAAGTTGGTGGACCCCTTGT ACAGTATCAAAGAGAAAGAAACAGAAAAAAGCCAGTCTTCTAAGAAACCATACAGCGACT AGCCTGTGCTACTTCTAGTTCCCAGTGCCTCACTGGGACAGGCAGGTCTTTCTGGACATT GTCTGTAGGACAGAATTGTATTTCTTGAATCCAGTACAGTTACTCCAGATAAACGTGTGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGCAGCCGCCGCGGGAGGCGTCCGCAACAAGATGAAGCTCATCATCCTGGACCACTACT CCCAGGCCAGTGAGTGGGCGGCCAAATACATCAGGAACCGCATCATCCAGTTTAACCCAG GGCCAGACAAGTACTTCACGCTGGGGCTCCCCACCGGGAGCACCCCCCTCGGCTGCTACA AGAAGCTGATCGAGTACTACAGGAATGGAGACCTGTCCTTCCAATACGTCAAGACTTTCA ACATGGACGAGTACGTGGGCCTCCCCCGAGACCACCCCGAGAGCTACCACTCCTTCATGT GGAACAACTTCTTCAAGCACATCGACATCCGCCCGGAAAACACGCACATTCTGGACGGGA ACGCGGCCGACCTGCAGGCCGAGTGCGACGCCTTCGAGGAGAAGATCCAGGCCGCGGGCG GGGTCGAGCTGTTTGTCGGAGGCATCGGCCCTGATGGACACATCGCCTTCAACGAGCCGG GCTCCAGTCTGGTGTCCAGGACGCGGGTGAAGACGCTGGCCATGGACACCATCCTGGCCA ACGCTCGGTTCTTCGATGGAGATCTCGCCAAGGTGCCCACCATGGCCCTGACAGTGGGCG TGGGCACCGTCATGGACGCCAGAGAGGTGATGATTCTCATCACGGGCGCCCACAAGGCCT TTGCTCTGTACAAAGCCATCGAGGAGGGCGTGAGCCACATGTGGACCGTGTCGGCCTTCC AGCAGCACCCCCGCACGGTGTTCGTGTGCGACGAGGACGCCACCCTGGAGCTGAAAGTGA AAACCGTCAAGTATTTCAAAGGTTTAATGCTTGTTCATAACAAGTTGGTGGACCCCTTGT ACAGTATCAAAGAGAAAGAAACAGAAAAAAGCCAGTCTTCTAAGAAACCATACAGCGACT AGCCTGTGCTACTTCTAGTTCCCAGTGCCTCACTGGGACAGGCAGGTCTTTCTGGACATT GTCTGTAGGACAGAATTGTATTTCTTGAATCCAGTACAGTTACTCCAGATAAACGTGTGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 440-628, + strand, RNAz p=0.990973 | |
| 512-628, - strand, RNAz p=0.943109 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 440-628, + strand, RNAz p=0.990973 | |
| 512-628, - strand, RNAz p=0.943109 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of CR609510, + |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 28-157, gnl|bosTau2|chr7 (35764652-35764781) | |
| 28-157, gnl|canFam2|chr2 (39798295-39798429) | |
| 28-157, gnl|danRer3|chr14 (23022769-23022644) | |
| 28-157, gnl|dasNov1|scaffold_82581 (4607-4736) | |
| 28-157, gnl|echTel1|scaffold_126365 (847-713) | |
| 28-157, gnl|fr1|chrUn (29027024-29027149) | |
| 28-157, gnl|galGal2|chr13 (16202124-16202260) | |
| 28-157, gnl|hg17|chr5 (141371657-141371791) | |
| 28-157, gnl|Hg17|chr5 (141371789-141371660) | |
| 28-157, gnl|loxAfr1|scaffold_168032 (163-29) | |
| 28-157, gnl|mm7|chr18 (38714288-38714416) | |
| 28-157, gnl|Mm7|chr18 (38714422-38714291) | |
| 28-157, gnl|monDom2|scaffold_50 (5326615-5326740) | |
| 28-157, gnl|oryCun1|scaffold_188012 (67193-67059) | |
| 28-157, gnl|panTro1|chr4 (148012835-148012969) | |
| 28-157, gnl|rheMac2|chr6 (138428286-138428420) | |
| 28-157, gnl|rn3|chr14 (41053932-41053807) | |
| 28-157, gnl|tetNig1|chr1 (1233951-1233826) | |
| 28-157, gnl|xenTro1|scaffold_473 (963696-963827) | |
| 440-628, gnl|bosTau2|chr7 (35770877-35771065) | |
| 440-628, gnl|canFam2|chr2 (39792076-39792279) | |
| 440-628, gnl|danRer3|chr14 (23023514-23023316) | |
| 440-628, gnl|dasNov1|scaffold_5593 (3643-3845) | |
| 440-628, gnl|echTel1|scaffold_291344 (4556-4358) | |
| 440-628, gnl|fr1|chrUn (29026221-29026431) | |
| 440-628, gnl|galGal2|chr13 (16199734-16199926) | |
| 440-628, gnl|hg17|chr5 (141364664-141364868) | |
| 440-628, gnl|Hg17|chr5 (141364867-141364679) | |
| 440-628, gnl|loxAfr1|scaffold_50069 (4771-4580) | |
| 440-628, gnl|mm7|chr18 (38708156-38708356) | |
| 440-628, gnl|Mm7|chr18 (38708355-38708167) | |
| 440-628, gnl|monDom2|scaffold_6 (66577898-66577707) | |
| 440-628, gnl|oryCun1|scaffold_188012 (71620-71418) | |
| 440-628, gnl|panTro1|chr4 (148005754-148005958) | |
| 440-628, gnl|rheMac2|chr6 (138421119-138421323) | |
| 440-628, gnl|rn3|chr16 (25992857-25992677) | |
| 440-628, gnl|tetNig1|chr1 (1234718-1234530) | |
| 440-628, gnl|xenTro1|scaffold_473 (960623-960814) | |
| 800-919, gnl|bosTau2|chr13 (49246569-49246685) | |
| 800-919, gnl|canFam2|chr24 (29057457-29057698) | |
| 800-919, gnl|hg17|chr20 (35545914-35546197) | |
| 800-919, gnl|loxAfr1|scaffold_19480 (22251-21893) | |
| 800-919, gnl|mm7|chr2 (157273243-157273550) | |
| 800-919, gnl|Mm7|chr5 (148050501-148050398) | |
| 800-919, gnl|oryCun1|scaffold_16874 (4858-4624) | |
| 800-919, gnl|rheMac2|chr10 (26981507-26981227) | |
| 800-919, gnl|rn3|chr3 (148147745-148148022) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 28-157, gnl|bosTau2|chr7 (35764652-35764781) | |
| 28-157, gnl|canFam2|chr2 (39798295-39798429) | |
| 28-157, gnl|danRer3|chr14 (23022769-23022644) | |
| 28-157, gnl|dasNov1|scaffold_82581 (4607-4736) | |
| 28-157, gnl|echTel1|scaffold_126365 (847-713) | |
| 28-157, gnl|fr1|chrUn (29027024-29027149) | |
| 28-157, gnl|galGal2|chr13 (16202124-16202260) | |
| 28-157, gnl|hg17|chr5 (141371657-141371791) | |
| 28-157, gnl|Hg17|chr5 (141371789-141371660) | |
| 28-157, gnl|loxAfr1|scaffold_168032 (163-29) | |
| 28-157, gnl|mm7|chr18 (38714288-38714416) | |
| 28-157, gnl|Mm7|chr18 (38714422-38714291) | |
| 28-157, gnl|monDom2|scaffold_50 (5326615-5326740) | |
| 28-157, gnl|oryCun1|scaffold_188012 (67193-67059) | |
| 28-157, gnl|panTro1|chr4 (148012835-148012969) | |
| 28-157, gnl|rheMac2|chr6 (138428286-138428420) | |
| 28-157, gnl|rn3|chr14 (41053932-41053807) | |
| 28-157, gnl|tetNig1|chr1 (1233951-1233826) | |
| 28-157, gnl|xenTro1|scaffold_473 (963696-963827) | |
| 440-628, gnl|bosTau2|chr7 (35770877-35771065) | |
| 440-628, gnl|canFam2|chr2 (39792076-39792279) | |
| 440-628, gnl|danRer3|chr14 (23023514-23023316) | |
| 440-628, gnl|dasNov1|scaffold_5593 (3643-3845) | |
| 440-628, gnl|echTel1|scaffold_291344 (4556-4358) | |
| 440-628, gnl|fr1|chrUn (29026221-29026431) | |
| 440-628, gnl|galGal2|chr13 (16199734-16199926) | |
| 440-628, gnl|hg17|chr5 (141364664-141364868) | |
| 440-628, gnl|Hg17|chr5 (141364867-141364679) | |
| 440-628, gnl|loxAfr1|scaffold_50069 (4771-4580) | |
| 440-628, gnl|mm7|chr18 (38708156-38708356) | |
| 440-628, gnl|Mm7|chr18 (38708355-38708167) | |
| 440-628, gnl|monDom2|scaffold_6 (66577898-66577707) | |
| 440-628, gnl|oryCun1|scaffold_188012 (71620-71418) | |
| 440-628, gnl|panTro1|chr4 (148005754-148005958) | |
| 440-628, gnl|rheMac2|chr6 (138421119-138421323) | |
| 440-628, gnl|rn3|chr16 (25992857-25992677) | |
| 440-628, gnl|tetNig1|chr1 (1234718-1234530) | |
| 440-628, gnl|xenTro1|scaffold_473 (960623-960814) | |
| 800-919, gnl|bosTau2|chr13 (49246569-49246685) | |
| 800-919, gnl|canFam2|chr24 (29057457-29057698) | |
| 800-919, gnl|hg17|chr20 (35545914-35546197) | |
| 800-919, gnl|loxAfr1|scaffold_19480 (22251-21893) | |
| 800-919, gnl|mm7|chr2 (157273243-157273550) | |
| 800-919, gnl|Mm7|chr5 (148050501-148050398) | |
| 800-919, gnl|oryCun1|scaffold_16874 (4858-4624) | |
| 800-919, gnl|rheMac2|chr10 (26981507-26981227) | |
| 800-919, gnl|rn3|chr3 (148147745-148148022) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| ill (0.175593) | |
| ton (0.1755) | |
| cut (0.169924) | |
| pty (0.142714) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| med (0.116252) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.175593) | |
| ton (0.1755) | |
| cut (0.169924) | |
| pty (0.142714) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| med (0.116252) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| eje (0.0988338) |