Non-Coding RNA Search

Ss1.1-Pig4-TMW8019C09.5

Sequence:


               
               CGTACAGCCCTGCTCTAGGGCTTAAATTTATCTGGAAATCCACAAGACAGACTAGACAGA
TCACGGAGGAGCCCATCCAGCTAAACCAAACACCGCAGAACTGCTGCCTGACTCACAGCA
ACCATGAGTAATAATGCTGATGAAGATCAGATCAAGGATAAGCTGGAACAGTTGAAATGT
CATTTTACATGGGAGTTGGTCATTCAAGACACTGAAATACCTGATTTAGAAAACAGGGTC
TTGGAGGAGATTGAGTTCCTCGACACCAAATACAATGTGGGAATACACAACCTACTGGCC
TATGTGAAACACCTGAAAGGCCAGAATGAGGGAGCCCTGAAGAGTTTGAAAGATGCTGAA
GACTTAACCCAACAAGAACATACTGACCAATCAGAGGTGAGAAGGCTGGTTACCTGGGGC
AACTATGCCTGGCTGTATTACCTTACGTATCGAAAGGCAGAAGCCCAGATTTACCTGGAC
AAGGTGAAGGACACTTGCAGGAAGCTTGCAAATCCCTCCAGCTATAGAATGGAGTGTCCT
CAGATGGACTGTGAGGAAGGATGGGCCTTGCTAAAATGTGGAGGAAAGAATTATGAACGG
GCCAAGGTCTGCTTCAAAAAAGCTCTGGAAGCAGACCCTGAAAATCCTGAATTCAGCACT
GGGTATGCAATCACCATCTATCGCCTAGACCACCTTAACAAAGTAGCAGGTTTCGATGGG
CCATTTTGTCTGAATGCTCTAAAACAGGCTGTCAGGCTAAATCCAGAAGATGCATATATT
AAGGCTCTCTTTGCCCTGAAGCTTCAAGAATTAGGACAAGAAGATGAAGGAGAAAAGTAC
ATTAAAGAAGCACTGACCAAGGAGTCCTCAAAGACCTACGTCTTCCGACACGCAGTCAAG
TTTTACCGAAGAAAGGGCTCTCTGGATGAAGCTCTTCAGTTCTCAAAACTGGCCTTGAAG
GCAACACCCTTCTCTTCTTTCCTGCATCACCAGACAGGGCTTTGCTACAAGTCAAAAATT
ACCCAAATAATGAAAGCTACAAATTGGCAGCCTAAAGGAGAGGACAAAGAAAACATCAGC
AGACTAATAAAATTAGCCACAGGTCATTTTGAATTTGCTGTGCAACAAAAGCCCACATTT
GAGATTGCTTATATAAACCTGGCAAAAATGTATGCAGAAGCAGGCGACCACAGCAAAGCA
GAAGATACTTTTCAAAGAGTGTTGTGTATGGAATCACTTGAAAAAGAGATACTGCAAGAG
ATACATTTCCACTATGGCCGATTTCTGGAATTTCAAAAAAAATCTGAAGTGGATGCGATT
AGTCATTATTTAAAAGCAGTACAAATAGAAACGGCATCATTCGAAAGGGATAAAAGTATA
CTTTCTTTGGAGAAATTGGTTTTAAAGAAACTTCGAAGAAATGAGTCAGATGCAGAAAGC
TTAAGCATCCTTGGGTTTGTCTATAAATTGAAAGGACAAATGAATGAAGCCCTGGAGTAT
TATGAGCAGGCCCTGAGGCTGGCTTCTAACTCGGAAAAATCTGTGGGACTTGATCCCTAA
GCACCAAAATGTGGACCACTCTCACACTTCATTTGATTTTTTTCTTTTTTTTTTTGGCCA
CTCCCGTGGTATACGGAAGTTCCAGACCAGGGATCGAACTTAGGCCACAGCAGTGCCAAC
GCTGAATCCTGAACTTGCTGTGCCACAGTGGAAACTCCTCATTTGATTTTAGGTGGATAT
ATACTAATCATCTTTTCTGCTAGCTGCTTTCAGAAACATACTATGTAATTCACTGCAATG
ATGTAATTTTTGGACAATTTTTCAAACCTGATAAAAAAAACATTGGTTGTATTTAGAAAA
TAGGAAAACAGTGTATATTTCTGTGTGTGAGAAAAAGGAAAAGAAAGAAGAACTTTCTCT
GTGAATGTTACACTATTGAATAGAAAAAATAGTTTGTTGAACATATTTGTGTGGCAAATA
AAACTCTGGACTTACATAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTACAGCCCTGCTCTAGGGCTTAAATTTATCTGGAAATCCACAAGACAGACTAGACAGA
TCACGGAGGAGCCCATCCAGCTAAACCAAACACCGCAGAACTGCTGCCTGACTCACAGCA
ACCATGAGTAATAATGCTGATGAAGATCAGATCAAGGATAAGCTGGAACAGTTGAAATGT
CATTTTACATGGGAGTTGGTCATTCAAGACACTGAAATACCTGATTTAGAAAACAGGGTC
TTGGAGGAGATTGAGTTCCTCGACACCAAATACAATGTGGGAATACACAACCTACTGGCC
TATGTGAAACACCTGAAAGGCCAGAATGAGGGAGCCCTGAAGAGTTTGAAAGATGCTGAA
GACTTAACCCAACAAGAACATACTGACCAATCAGAGGTGAGAAGGCTGGTTACCTGGGGC
AACTATGCCTGGCTGTATTACCTTACGTATCGAAAGGCAGAAGCCCAGATTTACCTGGAC
AAGGTGAAGGACACTTGCAGGAAGCTTGCAAATCCCTCCAGCTATAGAATGGAGTGTCCT
CAGATGGACTGTGAGGAAGGATGGGCCTTGCTAAAATGTGGAGGAAAGAATTATGAACGG
GCCAAGGTCTGCTTCAAAAAAGCTCTGGAAGCAGACCCTGAAAATCCTGAATTCAGCACT
GGGTATGCAATCACCATCTATCGCCTAGACCACCTTAACAAAGTAGCAGGTTTCGATGGG
CCATTTTGTCTGAATGCTCTAAAACAGGCTGTCAGGCTAAATCCAGAAGATGCATATATT
AAGGCTCTCTTTGCCCTGAAGCTTCAAGAATTAGGACAAGAAGATGAAGGAGAAAAGTAC
ATTAAAGAAGCACTGACCAAGGAGTCCTCAAAGACCTACGTCTTCCGACACGCAGTCAAG
TTTTACCGAAGAAAGGGCTCTCTGGATGAAGCTCTTCAGTTCTCAAAACTGGCCTTGAAG
GCAACACCCTTCTCTTCTTTCCTGCATCACCAGACAGGGCTTTGCTACAAGTCAAAAATT
ACCCAAATAATGAAAGCTACAAATTGGCAGCCTAAAGGAGAGGACAAAGAAAACATCAGC
AGACTAATAAAATTAGCCACAGGTCATTTTGAATTTGCTGTGCAACAAAAGCCCACATTT
GAGATTGCTTATATAAACCTGGCAAAAATGTATGCAGAAGCAGGCGACCACAGCAAAGCA
GAAGATACTTTTCAAAGAGTGTTGTGTATGGAATCACTTGAAAAAGAGATACTGCAAGAG
ATACATTTCCACTATGGCCGATTTCTGGAATTTCAAAAAAAATCTGAAGTGGATGCGATT
AGTCATTATTTAAAAGCAGTACAAATAGAAACGGCATCATTCGAAAGGGATAAAAGTATA
CTTTCTTTGGAGAAATTGGTTTTAAAGAAACTTCGAAGAAATGAGTCAGATGCAGAAAGC
TTAAGCATCCTTGGGTTTGTCTATAAATTGAAAGGACAAATGAATGAAGCCCTGGAGTAT
TATGAGCAGGCCCTGAGGCTGGCTTCTAACTCGGAAAAATCTGTGGGACTTGATCCCTAA
GCACCAAAATGTGGACCACTCTCACACTTCATTTGATTTTTTTCTTTTTTTTTTTGGCCA
CTCCCGTGGTATACGGAAGTTCCAGACCAGGGATCGAACTTAGGCCACAGCAGTGCCAAC
GCTGAATCCTGAACTTGCTGTGCCACAGTGGAAACTCCTCATTTGATTTTAGGTGGATAT
ATACTAATCATCTTTTCTGCTAGCTGCTTTCAGAAACATACTATGTAATTCACTGCAATG
ATGTAATTTTTGGACAATTTTTCAAACCTGATAAAAAAAACATTGGTTGTATTTAGAAAA
TAGGAAAACAGTGTATATTTCTGTGTGTGAGAAAAAGGAAAAGAAAGAAGAACTTTCTCT
GTGAATGTTACACTATTGAATAGAAAAAATAGTTTGTTGAACATATTTGTGTGGCAAATA
AAACTCTGGACTTACATAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|30582173|gb|AAP35313.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|30582173|gb|AAP35313.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               127-1575, gnl|bosTau2|chr26 (7305733-7304292)
               

               
               127-1575, gnl|Hg17|chr10 (91152016-91153505)
               

               
               127-1575, gnl|Mm7|chr19 (34348773-34350137)
               


               
               1746-1871, gnl|bosTau2|chr26 (7304292-7304171)
               

               
               1746-1871, gnl|Hg17|chr10 (91153505-91153617)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               127-1575, gnl|bosTau2|chr26 (7305733-7304292)
               

               
               127-1575, gnl|Hg17|chr10 (91152016-91153505)
               

               
               127-1575, gnl|Mm7|chr19 (34348773-34350137)
               


               
               1746-1871, gnl|bosTau2|chr26 (7304292-7304171)
               

               
               1746-1871, gnl|Hg17|chr10 (91153505-91153617)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               cbl (10.5614)
               

               
               sin (0.524843)
               

               
               cty (0.5204)
               

               
               cte (0.29274)
               

               
               lnt (0.284616)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               cag (0.151194)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               nbm (0.0993246)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (10.5614)
               

               
               sin (0.524843)
               

               
               cty (0.5204)
               

               
               cte (0.29274)
               

               
               lnt (0.284616)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               cag (0.151194)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               nbm (0.0993246)

	127-1575, gnl\|bosTau2\|chr26 (7305733-7304292)
	127-1575, gnl\|Hg17\|chr10 (91152016-91153505)
	127-1575, gnl\|Mm7\|chr19 (34348773-34350137)

	1746-1871, gnl\|bosTau2\|chr26 (7304292-7304171)
	1746-1871, gnl\|Hg17\|chr10 (91153505-91153617)

	cbl (10.5614)
	sin (0.524843)
	cty (0.5204)
	cte (0.29274)
	lnt (0.284616)
	thg (0.253582)
	cbe (0.239234)
	cmu (0.186393)
	sto (0.179824)
	rec (0.17307)
	cag (0.151194)
	liv (0.146284)
	spl (0.143184)
	nmm (0.132802)
	bla (0.124347)
	tra (0.123092)
	clu (0.119646)
	nbm (0.0993246)