Non-Coding RNA Search

Ss1.1-Pig4-TMW8019C15.5

Sequence:


               
               ATGAGAAGGACGTTTCTGTTACCAGTGTAAGTCCCCCCGGGGAGCATTCCAGGAGCGTCG
GACAAGGCAGTGTCCTGTTTATATTTCTGCTTCAAACCAAAAATCAAACTATTTAGCATT
TGCCTTAAGCTGATACGCCTAGTGCCCACTCCTGACCAAATGTATCAGCGTCTAGTTGAA
ATGACCAAATAGTCTCCTGAGATGTCCACACGATGAGTGTCGTTTTTAATTAGTCTCATC
TAAATATTCGTGCTTTCCTAGTTGATTGTGATATGTATAATATAACCTGTATGGTATTCT
TATTTAAAAAGGACATAAATGGCCAAGCAGCACATAGGTCACTGAGCGGTGAGATTTGCA
CCTTAGGACAGTAATTCGTCATGTTAAGAGCTGCAGAGAAACACCACACAGCACTAGGAA
TAGCTTGTCTTTACCTCACAGAAGTATTTTCTCTCAAACCGATACTTTCGGCTCGTATTG
TTGGGTACACCTGAATTTACTTGGTAGGAGATTTCGACTTCACGCTGATCACGTACCAAA
GGCATTTCGTACAAAGACTTTTTACAGATTTTTTTTTCTGGAAGAGATATATGTTGAAAT
TGCATTGCCTTCTGCAGTGTTTGGGCAGAGAGAATCACTTCTAAGAGTTATTTTTTAACC
TGCAAATTACTCCTCTTTCTGTTGTCTAATCATTGCTCAGTCGAGCAGGACGAAAGGCTA
CTCTTCTTGTGCAAGCGTTGATTAGACTGTAACGGGATATTGGAAATATTGAATTACCTT
TGGTCTTTTGGTATAAATATTTTCATTGGTTGTTTTACAGTATATTCGTATTGGAAATTT
CTTGTTTTGCCCTTCCTGAACAAAATATATTTTTCTATATAAAGAAACGTTTAAAAAATA
ATTGTGAGCTTAAATTAGAAGTCATTGTCACATATTGGAATTACAAGGGAATGTGGAGGG
CGAATGCTATTGACACTTTAAGAGATCATGTGAATTCATGTTATTGTTACAAGACATGAT
TGAGTGCAAAAAAAAAGACCAAAACCTCAACAAAACTTGAGACAAACTGTTATTGTGTAA
CTGAAATAAAGACATTTTATTATTTTAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGAGAAGGACGTTTCTGTTACCAGTGTAAGTCCCCCCGGGGAGCATTCCAGGAGCGTCG
GACAAGGCAGTGTCCTGTTTATATTTCTGCTTCAAACCAAAAATCAAACTATTTAGCATT
TGCCTTAAGCTGATACGCCTAGTGCCCACTCCTGACCAAATGTATCAGCGTCTAGTTGAA
ATGACCAAATAGTCTCCTGAGATGTCCACACGATGAGTGTCGTTTTTAATTAGTCTCATC
TAAATATTCGTGCTTTCCTAGTTGATTGTGATATGTATAATATAACCTGTATGGTATTCT
TATTTAAAAAGGACATAAATGGCCAAGCAGCACATAGGTCACTGAGCGGTGAGATTTGCA
CCTTAGGACAGTAATTCGTCATGTTAAGAGCTGCAGAGAAACACCACACAGCACTAGGAA
TAGCTTGTCTTTACCTCACAGAAGTATTTTCTCTCAAACCGATACTTTCGGCTCGTATTG
TTGGGTACACCTGAATTTACTTGGTAGGAGATTTCGACTTCACGCTGATCACGTACCAAA
GGCATTTCGTACAAAGACTTTTTACAGATTTTTTTTTCTGGAAGAGATATATGTTGAAAT
TGCATTGCCTTCTGCAGTGTTTGGGCAGAGAGAATCACTTCTAAGAGTTATTTTTTAACC
TGCAAATTACTCCTCTTTCTGTTGTCTAATCATTGCTCAGTCGAGCAGGACGAAAGGCTA
CTCTTCTTGTGCAAGCGTTGATTAGACTGTAACGGGATATTGGAAATATTGAATTACCTT
TGGTCTTTTGGTATAAATATTTTCATTGGTTGTTTTACAGTATATTCGTATTGGAAATTT
CTTGTTTTGCCCTTCCTGAACAAAATATATTTTTCTATATAAAGAAACGTTTAAAAAATA
ATTGTGAGCTTAAATTAGAAGTCATTGTCACATATTGGAATTACAAGGGAATGTGGAGGG
CGAATGCTATTGACACTTTAAGAGATCATGTGAATTCATGTTATTGTTACAAGACATGAT
TGAGTGCAAAAAAAAAGACCAAAACCTCAACAAAACTTGAGACAAACTGTTATTGTGTAA
CTGAAATAAAGACATTTTATTATTTTAAAAAAAAAA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               2-1110, gnl|bosTau2|chr3 (84267510-84268574)
               

               
               2-1110, gnl|Hg17|chr2 (238454977-238456558)
               

               
               2-1110, gnl|Mm7|chr1 (91023979-91025029)
               


               
               424-988, gnl|bosTau2|chr17 (3761666-3762212)
               

               
               424-988, gnl|Hg17|chr2 (238455396-238456439)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1110, gnl|bosTau2|chr3 (84267510-84268574)
               

               
               2-1110, gnl|Hg17|chr2 (238454977-238456558)
               

               
               2-1110, gnl|Mm7|chr1 (91023979-91025029)
               


               
               424-988, gnl|bosTau2|chr17 (3761666-3762212)
               

               
               424-988, gnl|Hg17|chr2 (238455396-238456439)

Expressed library(ies): 30 entry(ies)

More info

Expressed library(ies): 30 entry(ies)

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               gul (1.42071)
               

               
               liv (1.17027)
               

               
               lin (0.582411)
               

               
               sin (0.524843)
               

               
               sug (0.509165)
               

               
               spl (0.429553)
               

               
               amn (0.417711)
               

               
               tra (0.369276)
               

               
               cga (0.279096)
               

               
               kid (0.259471)
               

               
               mgp (0.230681)
               

               
               cbl (0.229595)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (1.42071)
               

               
               liv (1.17027)
               

               
               lin (0.582411)
               

               
               sin (0.524843)
               

               
               sug (0.509165)
               

               
               spl (0.429553)
               

               
               amn (0.417711)
               

               
               tra (0.369276)
               

               
               cga (0.279096)
               

               
               kid (0.259471)
               

               
               mgp (0.230681)
               

               
               cbl (0.229595)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	2-1110, gnl\|bosTau2\|chr3 (84267510-84268574)
	2-1110, gnl\|Hg17\|chr2 (238454977-238456558)
	2-1110, gnl\|Mm7\|chr1 (91023979-91025029)

	424-988, gnl\|bosTau2\|chr17 (3761666-3762212)
	424-988, gnl\|Hg17\|chr2 (238455396-238456439)

	gul (1.42071)
	liv (1.17027)
	lin (0.582411)
	sin (0.524843)
	sug (0.509165)
	spl (0.429553)
	amn (0.417711)
	tra (0.369276)
	cga (0.279096)
	kid (0.259471)
	mgp (0.230681)
	cbl (0.229595)
	aor (0.195274)
	nlu (0.191681)
	sag (0.182715)
	mcp (0.170648)
	cut (0.169924)
	mga (0.160205)
	tbr (0.154178)
	lun (0.150489)
	bfe (0.149858)
	hyp (0.142837)
	lnt (0.142308)
	nca (0.136874)
	pla (0.133672)
	ret (0.128733)
	thg (0.126791)
	bla (0.124347)
	spc (0.113366)
	cty (0.10408)