Ss1.1-Pig4-TMW8019C20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCTGCACACCGTGCTCTTCACGAAAGCTCTGGAGAACGTGGAGGGGCCGCCTCCTCCAG GCAGCCAGGCTGTGGAAGACTTGCAGCAGGAGATCAACGCCCAGTCCTTGGAGAAGGTTC AGCAGTATTACCGCAAACTCAGGGCCTTTTACCTGGAACGGTCTAACCTGCCCACGGACG CCAGCACCACGGCGGTGAAGATAGACCAGCTGATCCGCCCCATCAACGCCCTGGACGAGC TCTGCCGCCTCATGAAGTCCTTTGTCCACCCCAAGCCTGGCGCCTCAGGGAGCTTGGGCG CCGGCCTCATCCCCATCTCCTCCGAGCTCTGCTACCGCCTGGGGGCCTGCCAGATCGCCA TGTGCCGCACGGGCATGCAGAGGAGCACCCTGAGCCTCTCCCTGGAGCAGGCGGCCATCC TGGCTCGGAGCCACGGGCTGCTGCCCAAGTGCATCATGCAGGCCACAGACATCATGCGGA AGCAGGGCCCCAGGGTGGAGATTCTGGCCAAAAACCTCCGCGTCAAGGACCAGATGCCCC AGGGTGCACCTCGGCTCTACCGCCTCTGCCAGCCACCCGTGGATGGAGACCTCTAAGCAC CGAGATGCCTGGTGCTCGGCTGCACTCTCTGGAGCTGGGATTGGGGAGGACGCGGGGGCC ATGCTTCCTTCTCCGGAGCTGGCCCGAGGCCGCCTCCATCACCTCCTGTGAGGATAAGCG GTGCCTCCGCCTTGGATGAGCTGGCTGATCGGGCCTAGGCCGGCACGTCCTCCACACTTC TGCCAGAAGCCTGAGGGGTGCTGGGGACCACAGAACTGCTGGGTGCCGCCGGGGCTGGGC TCCTGCCCACAGGTCCCCAGGACACAGGGAAGAAGTCATGGGCACTGCAGCTGAAGGCCT GCAGCCCCAGCCCCTTCGGAGTGGCTCAACCTGCACTTTGGAAACTCCTGGTTTCCGTCT AAGTCCACATTCCAGGTGACCACACGCGTCTCCATCCCCCCCCCACTGCCCCACTTCCAG ACCCCCCCAACCCTGTACTAACCTGCTCGGTGGACTCGGAAAAGCTAGACCTCTGCCAGA AAAGATGGAGGGACAGGGCACAACCTCTGTTACCAGGAGAACAGTGGAAAGCCACACTGG CCTCTGACATTGGCGCCATCGAACCGGAGCCATCGGCCCTGGGCACGAGATTTGCTCTGA CTTTATTTATATGGCGTGAACTCTCTACAGTTTATTTTGGTGTTTTTATGTTGTTGTCGA GAACTTTTTTTTTTTCCAGGTTGTGTGATGATATATTTGACATTTTAAATTTCAGAGAAA GCTATATTGTCTAACAGGGGACCAACCTAAGGTAGTATTGACAACTCTTTCCAGTTCTAC TAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCTGCACACCGTGCTCTTCACGAAAGCTCTGGAGAACGTGGAGGGGCCGCCTCCTCCAG GCAGCCAGGCTGTGGAAGACTTGCAGCAGGAGATCAACGCCCAGTCCTTGGAGAAGGTTC AGCAGTATTACCGCAAACTCAGGGCCTTTTACCTGGAACGGTCTAACCTGCCCACGGACG CCAGCACCACGGCGGTGAAGATAGACCAGCTGATCCGCCCCATCAACGCCCTGGACGAGC TCTGCCGCCTCATGAAGTCCTTTGTCCACCCCAAGCCTGGCGCCTCAGGGAGCTTGGGCG CCGGCCTCATCCCCATCTCCTCCGAGCTCTGCTACCGCCTGGGGGCCTGCCAGATCGCCA TGTGCCGCACGGGCATGCAGAGGAGCACCCTGAGCCTCTCCCTGGAGCAGGCGGCCATCC TGGCTCGGAGCCACGGGCTGCTGCCCAAGTGCATCATGCAGGCCACAGACATCATGCGGA AGCAGGGCCCCAGGGTGGAGATTCTGGCCAAAAACCTCCGCGTCAAGGACCAGATGCCCC AGGGTGCACCTCGGCTCTACCGCCTCTGCCAGCCACCCGTGGATGGAGACCTCTAAGCAC CGAGATGCCTGGTGCTCGGCTGCACTCTCTGGAGCTGGGATTGGGGAGGACGCGGGGGCC ATGCTTCCTTCTCCGGAGCTGGCCCGAGGCCGCCTCCATCACCTCCTGTGAGGATAAGCG GTGCCTCCGCCTTGGATGAGCTGGCTGATCGGGCCTAGGCCGGCACGTCCTCCACACTTC TGCCAGAAGCCTGAGGGGTGCTGGGGACCACAGAACTGCTGGGTGCCGCCGGGGCTGGGC TCCTGCCCACAGGTCCCCAGGACACAGGGAAGAAGTCATGGGCACTGCAGCTGAAGGCCT GCAGCCCCAGCCCCTTCGGAGTGGCTCAACCTGCACTTTGGAAACTCCTGGTTTCCGTCT AAGTCCACATTCCAGGTGACCACACGCGTCTCCATCCCCCCCCCACTGCCCCACTTCCAG ACCCCCCCAACCCTGTACTAACCTGCTCGGTGGACTCGGAAAAGCTAGACCTCTGCCAGA AAAGATGGAGGGACAGGGCACAACCTCTGTTACCAGGAGAACAGTGGAAAGCCACACTGG CCTCTGACATTGGCGCCATCGAACCGGAGCCATCGGCCCTGGGCACGAGATTTGCTCTGA CTTTATTTATATGGCGTGAACTCTCTACAGTTTATTTTGGTGTTTTTATGTTGTTGTCGA GAACTTTTTTTTTTTCCAGGTTGTGTGATGATATATTTGACATTTTAAATTTCAGAGAAA GCTATATTGTCTAACAGGGGACCAACCTAAGGTAGTATTGACAACTCTTTCCAGTTCTAC TAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 26-143, gnl|bosTau2|chr13 (57094082-57093965) | |
| 26-143, gnl|canFam2|chr24 (38384603-38384766) | |
| 26-143, gnl|danRer3|chr8 (21501865-21501738) | |
| 26-143, gnl|echTel1|scaffold_294954 (5353-5502) | |
| 26-143, gnl|fr1|chrUn (192513674-192513540) | |
| 26-143, gnl|galGal2|chr20 (5931021-5931155) | |
| 26-143, gnl|hg17|chr20 (46682200-46682370) | |
| 26-143, gnl|Hg17|chr20 (46682338-46682221) | |
| 26-143, gnl|mm7|chr2 (166313577-166313737) | |
| 26-143, gnl|Mm7|chr2 (166313709-166313592) | |
| 26-143, gnl|monDom2|scaffold_1 (159850109-159850275) | |
| 26-143, gnl|rn3|chr3 (157604646-157604806) | |
| 26-143, gnl|tetNig1|chr6 (2379871-2379996) | |
| 26-143, gnl|xenTro1|scaffold_165 (267098-267222) | |
| 207-386, gnl|bosTau2|chr13 (57091390-57091211) | |
| 207-386, gnl|canFam2|chr24 (38381809-38382019) | |
| 207-386, gnl|danRer3|chr8 (21502652-21502465) | |
| 207-386, gnl|echTel1|scaffold_294954 (2231-2427) | |
| 207-386, gnl|fr1|chrUn (192515277-192515084) | |
| 207-386, gnl|galGal2|chr20 (5929617-5929834) | |
| 207-386, gnl|hg17|chr20 (46679381-46679590) | |
| 207-386, gnl|Hg17|chr20 (46679569-46679390) | |
| 207-386, gnl|loxAfr1|scaffold_14823 (37780-37992) | |
| 207-386, gnl|mm7|chr2 (166310977-166311185) | |
| 207-386, gnl|Mm7|chr2 (166311164-166310985) | |
| 207-386, gnl|monDom2|scaffold_1 (159847744-159847928) | |
| 207-386, gnl|panTro1|chr21 (49369305-49369514) | |
| 207-386, gnl|rheMac2|chr10 (15853524-15853316) | |
| 207-386, gnl|rn3|chr3 (157602077-157602284) | |
| 207-386, gnl|tetNig1|chr6 (2372352-2372561) | |
| 207-386, gnl|xenTro1|scaffold_165 (266279-266483) | |
| 671-1254, gnl|bosTau2|chr13 (57088478-57087896) | |
| 671-1254, gnl|Hg17|chr20 (46675717-46675150) | |
| 671-1254, gnl|Mm7|chr2 (166308362-166307788) | |
| 1276-1392, gnl|bosTau2|chr13 (57087843-57087728) | |
| 1276-1392, gnl|canFam2|chr24 (38378377-38378623) | |
| 1276-1392, gnl|galGal2|chr20 (5925117-5925289) | |
| 1276-1392, gnl|hg17|chr20 (46674976-46675224) | |
| 1276-1392, gnl|Hg17|chr20 (46675121-46674998) | |
| 1276-1392, gnl|loxAfr1|scaffold_19664 (23062-22800) | |
| 1276-1392, gnl|mm7|chr2 (166307617-166307873) | |
| 1276-1392, gnl|Mm7|chr2 (166307747-166307639) | |
| 1276-1392, gnl|monDom2|scaffold_1 (159843239-159843444) | |
| 1276-1392, gnl|panTro1|chr21 (49364757-49365008) | |
| 1276-1392, gnl|rheMac2|chr10 (15857930-15857682) | |
| 1276-1392, gnl|rn3|chr3 (157599461-157599723) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 26-143, gnl|bosTau2|chr13 (57094082-57093965) | |
| 26-143, gnl|canFam2|chr24 (38384603-38384766) | |
| 26-143, gnl|danRer3|chr8 (21501865-21501738) | |
| 26-143, gnl|echTel1|scaffold_294954 (5353-5502) | |
| 26-143, gnl|fr1|chrUn (192513674-192513540) | |
| 26-143, gnl|galGal2|chr20 (5931021-5931155) | |
| 26-143, gnl|hg17|chr20 (46682200-46682370) | |
| 26-143, gnl|Hg17|chr20 (46682338-46682221) | |
| 26-143, gnl|mm7|chr2 (166313577-166313737) | |
| 26-143, gnl|Mm7|chr2 (166313709-166313592) | |
| 26-143, gnl|monDom2|scaffold_1 (159850109-159850275) | |
| 26-143, gnl|rn3|chr3 (157604646-157604806) | |
| 26-143, gnl|tetNig1|chr6 (2379871-2379996) | |
| 26-143, gnl|xenTro1|scaffold_165 (267098-267222) | |
| 207-386, gnl|bosTau2|chr13 (57091390-57091211) | |
| 207-386, gnl|canFam2|chr24 (38381809-38382019) | |
| 207-386, gnl|danRer3|chr8 (21502652-21502465) | |
| 207-386, gnl|echTel1|scaffold_294954 (2231-2427) | |
| 207-386, gnl|fr1|chrUn (192515277-192515084) | |
| 207-386, gnl|galGal2|chr20 (5929617-5929834) | |
| 207-386, gnl|hg17|chr20 (46679381-46679590) | |
| 207-386, gnl|Hg17|chr20 (46679569-46679390) | |
| 207-386, gnl|loxAfr1|scaffold_14823 (37780-37992) | |
| 207-386, gnl|mm7|chr2 (166310977-166311185) | |
| 207-386, gnl|Mm7|chr2 (166311164-166310985) | |
| 207-386, gnl|monDom2|scaffold_1 (159847744-159847928) | |
| 207-386, gnl|panTro1|chr21 (49369305-49369514) | |
| 207-386, gnl|rheMac2|chr10 (15853524-15853316) | |
| 207-386, gnl|rn3|chr3 (157602077-157602284) | |
| 207-386, gnl|tetNig1|chr6 (2372352-2372561) | |
| 207-386, gnl|xenTro1|scaffold_165 (266279-266483) | |
| 671-1254, gnl|bosTau2|chr13 (57088478-57087896) | |
| 671-1254, gnl|Hg17|chr20 (46675717-46675150) | |
| 671-1254, gnl|Mm7|chr2 (166308362-166307788) | |
| 1276-1392, gnl|bosTau2|chr13 (57087843-57087728) | |
| 1276-1392, gnl|canFam2|chr24 (38378377-38378623) | |
| 1276-1392, gnl|galGal2|chr20 (5925117-5925289) | |
| 1276-1392, gnl|hg17|chr20 (46674976-46675224) | |
| 1276-1392, gnl|Hg17|chr20 (46675121-46674998) | |
| 1276-1392, gnl|loxAfr1|scaffold_19664 (23062-22800) | |
| 1276-1392, gnl|mm7|chr2 (166307617-166307873) | |
| 1276-1392, gnl|Mm7|chr2 (166307747-166307639) | |
| 1276-1392, gnl|monDom2|scaffold_1 (159843239-159843444) | |
| 1276-1392, gnl|panTro1|chr21 (49364757-49365008) | |
| 1276-1392, gnl|rheMac2|chr10 (15857930-15857682) | |
| 1276-1392, gnl|rn3|chr3 (157599461-157599723) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| sto (0.719295) | |
| fcc (0.39557) | |
| cly (0.361925) | |
| ill (0.351185) | |
| cmu (0.186393) | |
| csp (0.161186) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cty (0.10408) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sto (0.719295) | |
| fcc (0.39557) | |
| cly (0.361925) | |
| ill (0.351185) | |
| cmu (0.186393) | |
| csp (0.161186) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cty (0.10408) |