Non-Coding RNA Search

Ss1.1-Pig4-TMW8019D08.5

Sequence:


               
               GAAATATTTATACTATAAAAATGCAATAACCCTTGTTTTTTACATTTAAGTCCTTATGTA
ACATAATGTTTACATGCCAAAAAAAAAAAAAGGAATTATAAGAAAATGCTGTCATGGACC
CATCACTGTGGCATTTGCTGGAATACTGCTTGCTTATGATCTTTATAGTGCATTTTTATC
ACACAACCTCAGAGTATCTTTACCAAAGATTTTTAAAGTAAATTTCTTTTTAATATAGAC
TTATCATACTTTTATAATAATGAATGTGCACACACGCATATACAGAATATTTAGATTTAG
TTTTTTTTTCTTTCACATGGTATAATAAGGAAAGGATCCTAAAATATTTTATTTGAGGAT
TTCTTAACTATTGATTTGTATTGCTTTCTTGTCTTGTATTAATCATTTGGTGTCAACAAT
GCCAAATCACTCTTTACTGTCCAGTTACATGAAATTTTGCCTATAACAGAGATATAAAGA
TCTAGTACCTTGAGGATTGTAATTCCACTGTCTTTTGATATATTGCCTTGATTATGATCA
CTTAAATACATAAGTAATAGAAAAGAATCATAGCATCTATAAGAGAATGTTTGTAAAAAT
GTACTGGTTTTTAAAAAATTGTCAACAACACAAATATTTGGTAATTCCGTGTAATATGAG
AGGCGTGAAAAAGGAAAGAAAACCCACAATGTCCTTGGTTCTGCAGACCATTTCACAGTT
AGATTTCTTTTTCACCTGGTTCTGTGGTGCAGAGCGACTCAGCGTGGAGTCTCACCTGCG
AACAAATTGACCATTAGCACTCAAAAAGAAGTCTGTGTCCTCACCCCATATAGTGCATAT
CAAAGCTTCGAGATGCTGGATGGCTCTGCAGCTCAAAGACGTGGGTTCTTTTTCCTTTTC
CAATACATTGTTTCTGCGGGAGCAACTTCTCTGATCCAAAGTACTTCACTGAGTGTATGC
TGATGAATACAGTGGAGTTATCAACACTATAATTGTTTTCTCACTATGAAAGAGTTTGCA
AAGATGTTTGTGATGATGTTTCAAGTATATAAACTCTAACTACATTTAAACAATATTTAG
GTCCAGAGGAAATAAGAGAGCATTTTGCCGCGGGGCTATAGTAGAGGGTTTCTGGAATCT
AGACAGGACTCTGAAGATACAACTTCCAACAGTTTTCCTAGTTAGTAAAAATCCTATTAA
TGTGAACCAGCCAGGAATAACAGTGTTATTTCTATTTGATATGGTTTGGGCTTCTCTTGT
CAAATCTATGTCGGCTGCCCCTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAATATTTATACTATAAAAATGCAATAACCCTTGTTTTTTACATTTAAGTCCTTATGTA
ACATAATGTTTACATGCCAAAAAAAAAAAAAGGAATTATAAGAAAATGCTGTCATGGACC
CATCACTGTGGCATTTGCTGGAATACTGCTTGCTTATGATCTTTATAGTGCATTTTTATC
ACACAACCTCAGAGTATCTTTACCAAAGATTTTTAAAGTAAATTTCTTTTTAATATAGAC
TTATCATACTTTTATAATAATGAATGTGCACACACGCATATACAGAATATTTAGATTTAG
TTTTTTTTTCTTTCACATGGTATAATAAGGAAAGGATCCTAAAATATTTTATTTGAGGAT
TTCTTAACTATTGATTTGTATTGCTTTCTTGTCTTGTATTAATCATTTGGTGTCAACAAT
GCCAAATCACTCTTTACTGTCCAGTTACATGAAATTTTGCCTATAACAGAGATATAAAGA
TCTAGTACCTTGAGGATTGTAATTCCACTGTCTTTTGATATATTGCCTTGATTATGATCA
CTTAAATACATAAGTAATAGAAAAGAATCATAGCATCTATAAGAGAATGTTTGTAAAAAT
GTACTGGTTTTTAAAAAATTGTCAACAACACAAATATTTGGTAATTCCGTGTAATATGAG
AGGCGTGAAAAAGGAAAGAAAACCCACAATGTCCTTGGTTCTGCAGACCATTTCACAGTT
AGATTTCTTTTTCACCTGGTTCTGTGGTGCAGAGCGACTCAGCGTGGAGTCTCACCTGCG
AACAAATTGACCATTAGCACTCAAAAAGAAGTCTGTGTCCTCACCCCATATAGTGCATAT
CAAAGCTTCGAGATGCTGGATGGCTCTGCAGCTCAAAGACGTGGGTTCTTTTTCCTTTTC
CAATACATTGTTTCTGCGGGAGCAACTTCTCTGATCCAAAGTACTTCACTGAGTGTATGC
TGATGAATACAGTGGAGTTATCAACACTATAATTGTTTTCTCACTATGAAAGAGTTTGCA
AAGATGTTTGTGATGATGTTTCAAGTATATAAACTCTAACTACATTTAAACAATATTTAG
GTCCAGAGGAAATAAGAGAGCATTTTGCCGCGGGGCTATAGTAGAGGGTTTCTGGAATCT
AGACAGGACTCTGAAGATACAACTTCCAACAGTTTTCCTAGTTAGTAAAAATCCTATTAA
TGTGAACCAGCCAGGAATAACAGTGTTATTTCTATTTGATATGGTTTGGGCTTCTCTTGT
CAAATCTATGTCGGCTGCCCCTTG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1284, gnl|bosTau2|chr1 (48990976-48992279)
               

               
               1-1284, gnl|Hg17|chr3 (190077255-190078738)
               

               
               1-1284, gnl|Mm7|chr16 (24641876-24643197)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1284, gnl|bosTau2|chr1 (48990976-48992279)
               

               
               1-1284, gnl|Hg17|chr3 (190077255-190078738)
               

               
               1-1284, gnl|Mm7|chr16 (24641876-24643197)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               aor (0.195274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)

	1-1284, gnl\|bosTau2\|chr1 (48990976-48992279)
	1-1284, gnl\|Hg17\|chr3 (190077255-190078738)
	1-1284, gnl\|Mm7\|chr16 (24641876-24643197)