Non-Coding RNA Search

Ss1.1-Pig4-TMW8019D10.5.5

Sequence:


               
               TTGTGAGTCTACGTTTTATTTGTCTTTATACTTTTGGTAGAAGGGTTAACTTTTTTATAA
CCTTACTCAGGAAAACTAATTATTTGTTCATTAGAAATCTATGAAGAATGAAGAAACTTA
GGAAAGTTAAGCAGGGAATGTGGTGGTACATGGCTTAAACATCATCCATTTGGCTCAAGC
AAAATGCAAACCATTATTCAGTCATTATGAGTTTAGTTAGCTTTCTGTAGCCAATTTATC
ATGAAATCTGTCCACTCAACTTTGACAATGAGCCATATCTAAGCTTACTGCATTACTAGA
CTAGTTTCAAAAATCTAGAAAGCACAGATTGATATCCTTAGTATTGCTATGTATGAAGTT
GTTAAAACTGGAGAAAATTCTACAGAAATAAGTACTCTTGAGGTTTTATATTAAAAGTTC
AGACCAGCATATCAAAAGGTGCTTCTTAGTAAAATGATTTAAAATTATTACATTCCAAAA
GATTTTCCCTTTAATTTTCATTTATGTACGTATTTCAGAATATCATACTTCATGAAAAAG
ATACTAGAAACGAACAACAACAACAAAAGTCTTGAAATTAAGGGCACTGATAATCTTGTC
AGGGTTAGAAGAAGAGGGAAGTTATTTGCAGGGAACAATGTTTTTCTTTTAAGATCTTTC
ATTTATGGGAAACTTAGAATATATACTTACTACATTGTGACGAATATCACAAACCATATA
ATATACCCTTTACTCTGACTGCAGTTTTAAAAAGGTGGATGATTAAAGCTATTATTTTTC
CTTTAAATAACTTGAGAGTTTTTTTCTCTTATAACTTGTATTTTTATGTCCCCAGTTAGT
TAAGCAGTGGTATGAATATATGTTGCTAAAGAGTGTTCTCAGAATTCTCATAAGCAATGA
AGGACAACATCCAGCATTCTGAGTGTTACCAAAAATACCATGTGTAATGTAAAACTTCTG
TGTGTCTGCAGTGCATCATGCAGAGTTTGGTGCATATGTAAATTCATGCTTCTCTTTCAT
TCTTACAATTTTATATCATAGTCAGAGATTTAATTTCGTGGAATGAGGGCAGTGCTATTT
TTCTTGGAAAAATTAGGTTTGTAAGTATTATCTGTGTTTCACATCCACCACCTTTTAAAA
AATAACTAGTTATTTGTTGTTGAAAACATTTAAAACTTTGAAATTAAATTTGCAAAAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTGAGTCTACGTTTTATTTGTCTTTATACTTTTGGTAGAAGGGTTAACTTTTTTATAA
CCTTACTCAGGAAAACTAATTATTTGTTCATTAGAAATCTATGAAGAATGAAGAAACTTA
GGAAAGTTAAGCAGGGAATGTGGTGGTACATGGCTTAAACATCATCCATTTGGCTCAAGC
AAAATGCAAACCATTATTCAGTCATTATGAGTTTAGTTAGCTTTCTGTAGCCAATTTATC
ATGAAATCTGTCCACTCAACTTTGACAATGAGCCATATCTAAGCTTACTGCATTACTAGA
CTAGTTTCAAAAATCTAGAAAGCACAGATTGATATCCTTAGTATTGCTATGTATGAAGTT
GTTAAAACTGGAGAAAATTCTACAGAAATAAGTACTCTTGAGGTTTTATATTAAAAGTTC
AGACCAGCATATCAAAAGGTGCTTCTTAGTAAAATGATTTAAAATTATTACATTCCAAAA
GATTTTCCCTTTAATTTTCATTTATGTACGTATTTCAGAATATCATACTTCATGAAAAAG
ATACTAGAAACGAACAACAACAACAAAAGTCTTGAAATTAAGGGCACTGATAATCTTGTC
AGGGTTAGAAGAAGAGGGAAGTTATTTGCAGGGAACAATGTTTTTCTTTTAAGATCTTTC
ATTTATGGGAAACTTAGAATATATACTTACTACATTGTGACGAATATCACAAACCATATA
ATATACCCTTTACTCTGACTGCAGTTTTAAAAAGGTGGATGATTAAAGCTATTATTTTTC
CTTTAAATAACTTGAGAGTTTTTTTCTCTTATAACTTGTATTTTTATGTCCCCAGTTAGT
TAAGCAGTGGTATGAATATATGTTGCTAAAGAGTGTTCTCAGAATTCTCATAAGCAATGA
AGGACAACATCCAGCATTCTGAGTGTTACCAAAAATACCATGTGTAATGTAAAACTTCTG
TGTGTCTGCAGTGCATCATGCAGAGTTTGGTGCATATGTAAATTCATGCTTCTCTTTCAT
TCTTACAATTTTATATCATAGTCAGAGATTTAATTTCGTGGAATGAGGGCAGTGCTATTT
TTCTTGGAAAAATTAGGTTTGTAAGTATTATCTGTGTTTCACATCCACCACCTTTTAAAA
AATAACTAGTTATTTGTTGTTGAAAACATTTAAAACTTTGAAATTAAATTTGCAAAAATG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               159-276, - strand, RNAz p=0.700724

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               159-276, - strand, RNAz p=0.700724

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-1200, gnl|bosTau2|chr26 (241844-243018)
               

               
               1-1200, gnl|Hg17|chr10 (59625749-59624566)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1200, gnl|bosTau2|chr26 (241844-243018)
               

               
               1-1200, gnl|Hg17|chr10 (59625749-59624566)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               tes (0.415628)
               

               
               mga (0.32041)
               

               
               cbl (0.229595)
               

               
               fty (0.17584)
               

               
               isp (0.150376)
               

               
               lin (0.145603)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               mga (0.32041)
               

               
               cbl (0.229595)
               

               
               fty (0.17584)
               

               
               isp (0.150376)
               

               
               lin (0.145603)

	1-1200, gnl\|bosTau2\|chr26 (241844-243018)
	1-1200, gnl\|Hg17\|chr10 (59625749-59624566)

	tes (0.415628)
	mga (0.32041)
	cbl (0.229595)
	fty (0.17584)
	isp (0.150376)
	lin (0.145603)