Non-Coding RNA Search

Ss1.1-Pig4-TMW8019D14.3

Sequence:


               
               AGAGCCACCCACAGTGCGGGTGACAAAGCACACGGCCCAGGATGGGGGCACCACACTGAG
GTGCTGGGCCCTGGGCTTCTATCCACAAGACATCTCGCTGAGCTGGTGGCTGGGCGAAAA
GGAGCTGACTTCCAAGACTGAGTATGTGGAGACACGCCCCAGTGGCGATGGCACCTATCA
GACATGGTTGGCCACGCAGGTGCCAGCTGGGGAAGAGATCCAGTACACCTGCCATGTGCA
ACACTCCAGCCTGGGGTGTGTGTGAGGGTGAGGGTATGTGTAGTATGTGGGTGTCCTTAT
GTATTTGAGGAGAAGCTCAGAGGGACAGGGGCTTAGGGGCCTCTTAGTCCCAGGCAGCTG
AAGGATGGGAAACAACACAGGCCGTATTTCCCATATTACCTGTCCTTTTGAATGGTTTGA
ACATTTACAGTAAGCACATGTTACTTTTAAAATGAGGGGAAGACCTCTTTTTACTGTGTC
CTATGGAAATGTCTCCTCAGTGAACAAGACACTCCCTGGGACTACACACTGATTGATTCT
GCCAGCAGCTCCAGTCTCATGGCCATTTGAGGTGCTAGGGGCCGGGACTCCAGAGCCCTA
GCAAGCAGAGGAAGCACTCCACTGTCATAAAGGACACAAGGCCAGACCTTTCCCAGGGGA
TCCTCTGCCTCCCCTAAAGTGGACATGAAAAGTGTGACAGAACCTCCTGTGGGGACTTCT
GAAACCTCCATGTCTGCAGCCCTGGGAGACCTTGGCCCCAAGATGTGAACGACTGGTGGT
ATTAGAAAAAGATTCAGCCTGCCCTGGTGGCCTGCAGGACCTCAGCAATGAGATCATAAT
TATCAGATTGTACTTAAAATGTATCTTAAATGTCAATCTTTCTCAGTGATATTGTCATGT
TCCGTATTCACTGTACTAACCACATAAGCAGTATTCTAAGCACTTTACTGTAATCTAAGC
TATTTAATATTCAAAGTACATTTGTGCAGGAGAATTAATAATCCTGTGCTACAGATGAGG
AAACTAGGCCCAGGGTCCCACAGCTGGTTCATGCCAGAGCTGGAATGTGAGGCCAGGCAG
TCTAGCTGCATGCTGGGCACCTCACCACTGTACCAAAAGCCTCAATGAAAACCATGCTGT
GCTGTAAATGGGCAAGTAAGTACAGGTCTGCAATCCCTTATCTGCAATTCTGAAATCCAG
AAGAAAAACCTCTCAAAGTCAGAAGTTTCTTCCAAGCTTTGTCATCAAATCCTGACCGGG
GGGAAGGGCAAGAGAAAAAAAATTCCTGAAGTGAAGTGAGGCTATTTATACTCTGTTTAC
TTCTTGTGTGCCTTCTTGCAGTTTTCCACAGAAATATTAGTTTGGGAAATCATGGAGTGT
CATCCCAGACCTCTCTAAGTAGTGTTATGTGATATCCAGCATCTACAGTACCTTCCTAAA
GCCAAAAGAATTCTAAATTCTGAAATACATCTGGCCCTAAGGGTTTCGGGTAAGGGATTG
TGGACCTGTATTAATAAGGTTTTCTAATAAATGTTTTATTTTTAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGCCACCCACAGTGCGGGTGACAAAGCACACGGCCCAGGATGGGGGCACCACACTGAG
GTGCTGGGCCCTGGGCTTCTATCCACAAGACATCTCGCTGAGCTGGTGGCTGGGCGAAAA
GGAGCTGACTTCCAAGACTGAGTATGTGGAGACACGCCCCAGTGGCGATGGCACCTATCA
GACATGGTTGGCCACGCAGGTGCCAGCTGGGGAAGAGATCCAGTACACCTGCCATGTGCA
ACACTCCAGCCTGGGGTGTGTGTGAGGGTGAGGGTATGTGTAGTATGTGGGTGTCCTTAT
GTATTTGAGGAGAAGCTCAGAGGGACAGGGGCTTAGGGGCCTCTTAGTCCCAGGCAGCTG
AAGGATGGGAAACAACACAGGCCGTATTTCCCATATTACCTGTCCTTTTGAATGGTTTGA
ACATTTACAGTAAGCACATGTTACTTTTAAAATGAGGGGAAGACCTCTTTTTACTGTGTC
CTATGGAAATGTCTCCTCAGTGAACAAGACACTCCCTGGGACTACACACTGATTGATTCT
GCCAGCAGCTCCAGTCTCATGGCCATTTGAGGTGCTAGGGGCCGGGACTCCAGAGCCCTA
GCAAGCAGAGGAAGCACTCCACTGTCATAAAGGACACAAGGCCAGACCTTTCCCAGGGGA
TCCTCTGCCTCCCCTAAAGTGGACATGAAAAGTGTGACAGAACCTCCTGTGGGGACTTCT
GAAACCTCCATGTCTGCAGCCCTGGGAGACCTTGGCCCCAAGATGTGAACGACTGGTGGT
ATTAGAAAAAGATTCAGCCTGCCCTGGTGGCCTGCAGGACCTCAGCAATGAGATCATAAT
TATCAGATTGTACTTAAAATGTATCTTAAATGTCAATCTTTCTCAGTGATATTGTCATGT
TCCGTATTCACTGTACTAACCACATAAGCAGTATTCTAAGCACTTTACTGTAATCTAAGC
TATTTAATATTCAAAGTACATTTGTGCAGGAGAATTAATAATCCTGTGCTACAGATGAGG
AAACTAGGCCCAGGGTCCCACAGCTGGTTCATGCCAGAGCTGGAATGTGAGGCCAGGCAG
TCTAGCTGCATGCTGGGCACCTCACCACTGTACCAAAAGCCTCAATGAAAACCATGCTGT
GCTGTAAATGGGCAAGTAAGTACAGGTCTGCAATCCCTTATCTGCAATTCTGAAATCCAG
AAGAAAAACCTCTCAAAGTCAGAAGTTTCTTCCAAGCTTTGTCATCAAATCCTGACCGGG
GGGAAGGGCAAGAGAAAAAAAATTCCTGAAGTGAAGTGAGGCTATTTATACTCTGTTTAC
TTCTTGTGTGCCTTCTTGCAGTTTTCCACAGAAATATTAGTTTGGGAAATCATGGAGTGT
CATCCCAGACCTCTCTAAGTAGTGTTATGTGATATCCAGCATCTACAGTACCTTCCTAAA
GCCAAAAGAATTCTAAATTCTGAAATACATCTGGCCCTAAGGGTTTCGGGTAAGGGATTG
TGGACCTGTATTAATAAGGTTTTCTAATAAATGTTTTATTTTTAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61818487|ref|XP_585880.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61818487|ref|XP_585880.1|

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-253, gnl|bosTau2|chr7 (27038191-27037939)
               

               
               1-253, gnl|Hg17|chr6 (31346243-31345991)
               

               
               1-253, gnl|Mm7|chr13 (23071940-23071688)
               


               
               52-244, gnl|bosTau2|chr23 (23093720-23093528)
               

               
               52-244, gnl|Hg17|chr6 (29905223-29905415)
               

               
               52-244, gnl|Mm7|chr17 (34515190-34514998)
               


               
               550-947, gnl|bosTau2|chr7 (27036190-27035792)
               


               
               1405-1543, gnl|bosTau2|chr7 (27034745-27034597)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-253, gnl|bosTau2|chr7 (27038191-27037939)
               

               
               1-253, gnl|Hg17|chr6 (31346243-31345991)
               

               
               1-253, gnl|Mm7|chr13 (23071940-23071688)
               


               
               52-244, gnl|bosTau2|chr23 (23093720-23093528)
               

               
               52-244, gnl|Hg17|chr6 (29905223-29905415)
               

               
               52-244, gnl|Mm7|chr17 (34515190-34514998)
               


               
               550-947, gnl|bosTau2|chr7 (27036190-27035792)
               


               
               1405-1543, gnl|bosTau2|chr7 (27034745-27034597)

Expressed library(ies): 30 entry(ies)

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Expressed library(ies): 30 entry(ies)

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               fty (1.05504)
               

               
               thg (0.760746)
               

               
               pla (0.534688)
               

               
               mgp (0.461361)
               

               
               spl (0.429553)
               

               
               hea (0.408998)
               

               
               gul (0.355177)
               

               
               kid (0.259471)
               

               
               eep (0.245128)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (1.05504)
               

               
               thg (0.760746)
               

               
               pla (0.534688)
               

               
               mgp (0.461361)
               

               
               spl (0.429553)
               

               
               hea (0.408998)
               

               
               gul (0.355177)
               

               
               kid (0.259471)
               

               
               eep (0.245128)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	1-253, gnl\|bosTau2\|chr7 (27038191-27037939)
	1-253, gnl\|Hg17\|chr6 (31346243-31345991)
	1-253, gnl\|Mm7\|chr13 (23071940-23071688)

	52-244, gnl\|bosTau2\|chr23 (23093720-23093528)
	52-244, gnl\|Hg17\|chr6 (29905223-29905415)
	52-244, gnl\|Mm7\|chr17 (34515190-34514998)

	550-947, gnl\|bosTau2\|chr7 (27036190-27035792)

	1405-1543, gnl\|bosTau2\|chr7 (27034745-27034597)

	fty (1.05504)
	thg (0.760746)
	pla (0.534688)
	mgp (0.461361)
	spl (0.429553)
	hea (0.408998)
	gul (0.355177)
	kid (0.259471)
	eep (0.245128)
	col (0.195008)
	cmu (0.186393)
	sto (0.179824)
	ill (0.175593)
	rec (0.17307)
	mga (0.160205)
	fco (0.157208)
	liv (0.146284)
	csk (0.140746)
	lyg (0.133103)
	ute (0.132784)
	ova (0.129132)
	ret (0.128733)
	sug (0.127291)
	bla (0.124347)
	ebs (0.118301)
	ecc (0.115035)
	spc (0.113366)
	cty (0.10408)
	eje (0.0988338)
	ldo (0.0970026)