Non-Coding RNA Search

Ss1.1-Pig4-TMW8019F19.5

Sequence:


               
               CAAAATTATTACATAAATATCTTTTTTATGAAAATTATAACAGGGTAATATCTGAAGCCA
TTTTGAATATGTGGAAGAAATGTCTGACTAGAAGCCAGTATATCTTCACATCCCTAAAGG
ACAGGAGTTTCGCAAGTTGAGTGCAGTTGGCTGGGGAAAGGAGAAACAGGTCTTATTCTG
TTTTTTGGCACATACTCTATCAGGGTTTTGAGAAAAGTTTGCTCCTACAATAATTCTCAT
CTGTTTCTCAAAGGCAAAAGCATGGTTTCCAAACTTTCTGGGCTTTGGCTTGTTAGCTGT
GATTTCACCTGTCGTATTTCTTGGCACATTGAATAACTGCATAACCCTGCCTCTCTAATG
TAAAAAGCTGAAGCAAGACAAATGAGGAATTTGGTAGATTGTGGCAGATACATTGTAAAT
GCAAGTCTCTTCATAGTTAACCACAGATTGTTTACATAATGCAAATGGACTGTCTGGGGT
CAAGGTAAAATAATTATTTGAGTAGATTATTAGGTCAGTTATCTGGCAGCCAAGAATTAG
GTGCATGTTCAAGTCAAAATGAATTTGTTGTTTTTAGTTGGTATCATTTTTCTCTAAATA
TTCAGAAACGCAGAATGTACATTTTATTAATAGGAATGGAAGCTCATGCTTGAAGATTTG
CATAGGGTGGATGTATATATTTTATAAAAGCAAGTTGTAAAATATGTAAAGCTACTGCTT
TTTAAATAGAATATAAATGTTGACAGATAAATCTATATATTATATTTTTAATTACATGTA
TCAAACTTTTGTTAGTTGAATATAAACTACATTGTGTGCTTTATGGAATTCAGTAACTTT
TAATAATAAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAATTATTACATAAATATCTTTTTTATGAAAATTATAACAGGGTAATATCTGAAGCCA
TTTTGAATATGTGGAAGAAATGTCTGACTAGAAGCCAGTATATCTTCACATCCCTAAAGG
ACAGGAGTTTCGCAAGTTGAGTGCAGTTGGCTGGGGAAAGGAGAAACAGGTCTTATTCTG
TTTTTTGGCACATACTCTATCAGGGTTTTGAGAAAAGTTTGCTCCTACAATAATTCTCAT
CTGTTTCTCAAAGGCAAAAGCATGGTTTCCAAACTTTCTGGGCTTTGGCTTGTTAGCTGT
GATTTCACCTGTCGTATTTCTTGGCACATTGAATAACTGCATAACCCTGCCTCTCTAATG
TAAAAAGCTGAAGCAAGACAAATGAGGAATTTGGTAGATTGTGGCAGATACATTGTAAAT
GCAAGTCTCTTCATAGTTAACCACAGATTGTTTACATAATGCAAATGGACTGTCTGGGGT
CAAGGTAAAATAATTATTTGAGTAGATTATTAGGTCAGTTATCTGGCAGCCAAGAATTAG
GTGCATGTTCAAGTCAAAATGAATTTGTTGTTTTTAGTTGGTATCATTTTTCTCTAAATA
TTCAGAAACGCAGAATGTACATTTTATTAATAGGAATGGAAGCTCATGCTTGAAGATTTG
CATAGGGTGGATGTATATATTTTATAAAAGCAAGTTGTAAAATATGTAAAGCTACTGCTT
TTTAAATAGAATATAAATGTTGACAGATAAATCTATATATTATATTTTTAATTACATGTA
TCAAACTTTTGTTAGTTGAATATAAACTACATTGTGTGCTTTATGGAATTCAGTAACTTT
TAATAATAAAGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               599-756, + strand, RNAz p=0.827445

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               599-756, + strand, RNAz p=0.827445

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               698-769, + strand, RNAmicro p=0.988754

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               698-769, + strand, RNAmicro p=0.988754

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               2-852, gnl|bosTau2|chr14 (20858458-20859310)
               

               
               2-852, gnl|Hg17|chr8 (74863787-74862930)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-852, gnl|bosTau2|chr14 (20858458-20859310)
               

               
               2-852, gnl|Hg17|chr8 (74863787-74862930)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

Help | Less info


               
               tra (0.369276)
               

               
               vin (0.332557)
               

               
               mgp (0.230681)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.369276)
               

               
               vin (0.332557)
               

               
               mgp (0.230681)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

	2-852, gnl\|bosTau2\|chr14 (20858458-20859310)
	2-852, gnl\|Hg17\|chr8 (74863787-74862930)

	tra (0.369276)
	vin (0.332557)
	mgp (0.230681)
	gul (0.177588)
	ton (0.1755)
	rec (0.17307)
	fco (0.157208)
	fat (0.147427)
	liv (0.146284)
	lyg (0.133103)
	kid (0.129735)
	sug (0.127291)
	bla (0.124347)
	spc (0.113366)