Non-Coding RNA Search

Ss1.1-Pig4-TMW8019G02.5

Sequence:


               
               TTTTTAGAATAATTCTGAGATTCCTGTACTCCCTCAAAACAACAGCTTTAGTAGTCACTT
CATTTCTTGAAAGCCAGCCACAAGTAAAAACACCTGTAGAGCTTCTGGTTTCCTAACTTG
GCTTTCAAATTGAACTTTTTAGCCATAGACAACCTTTAAGTATTTAAAGAGATGACTTCC
TTAAACTATTGTCATAGTGGTTAGTGGATGTGTCCAGTTTTATGTATCCTTGATGCTTTC
TATATTTCTTCTATCACTGCTAAGGGAATAAGCCATAACGGCTTCTCCAGGTTTAAGAGA
ACAGTAAAGTACCTGGAAAACCACCATTTTTGAATGTATGGACACTGGACTTGATACCAT
CTGCAATGAAACCTAAAGAATTAAAGAATTTGTTCTTTTTCCCCCATATATATTACTAGT
GCCATGTATAGGACTGAAGTAAATAATAGATTAAAAACAGATTTTGGTTCTGTTTCCTCT
GTCTTTAAATGCATAACTCAAATTTTAAGTACTTGAAGTTTCTTCTAACTCACGAGAATT
AATAGTAAAGTTGACCTGTCAATGGTAAATTATATTTTAAGTGACTTATTCCGGGGCAGG
TTTGCAATGTGATAATCAGATTTAAAAGAACAACTTACTAGTTTGCTTTCTTGTGTGGGT
GTACTCACGATTTTTTAAAGTATGAACCACAGTTAACTAGTGGTCTCAGGGGTAGTGAAA
ACACTCACTTTTTTTTTTTTTTTAATGGCGTAGTTAACATGCTTCCGACACTGATCATGC
TGTGTTAGTGATTTTGGAAGTGATTCAAGTTAGCTGTGTTTTGTGTTGGCATAACAAAAC
TGTTAAATGATTGTTGATTCACTTTTAAGTGAGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTAGAATAATTCTGAGATTCCTGTACTCCCTCAAAACAACAGCTTTAGTAGTCACTT
CATTTCTTGAAAGCCAGCCACAAGTAAAAACACCTGTAGAGCTTCTGGTTTCCTAACTTG
GCTTTCAAATTGAACTTTTTAGCCATAGACAACCTTTAAGTATTTAAAGAGATGACTTCC
TTAAACTATTGTCATAGTGGTTAGTGGATGTGTCCAGTTTTATGTATCCTTGATGCTTTC
TATATTTCTTCTATCACTGCTAAGGGAATAAGCCATAACGGCTTCTCCAGGTTTAAGAGA
ACAGTAAAGTACCTGGAAAACCACCATTTTTGAATGTATGGACACTGGACTTGATACCAT
CTGCAATGAAACCTAAAGAATTAAAGAATTTGTTCTTTTTCCCCCATATATATTACTAGT
GCCATGTATAGGACTGAAGTAAATAATAGATTAAAAACAGATTTTGGTTCTGTTTCCTCT
GTCTTTAAATGCATAACTCAAATTTTAAGTACTTGAAGTTTCTTCTAACTCACGAGAATT
AATAGTAAAGTTGACCTGTCAATGGTAAATTATATTTTAAGTGACTTATTCCGGGGCAGG
TTTGCAATGTGATAATCAGATTTAAAAGAACAACTTACTAGTTTGCTTTCTTGTGTGGGT
GTACTCACGATTTTTTAAAGTATGAACCACAGTTAACTAGTGGTCTCAGGGGTAGTGAAA
ACACTCACTTTTTTTTTTTTTTTAATGGCGTAGTTAACATGCTTCCGACACTGATCATGC
TGTGTTAGTGATTTTGGAAGTGATTCAAGTTAGCTGTGTTTTGTGTTGGCATAACAAAAC
TGTTAAATGATTGTTGATTCACTTTTAAGTGAGTTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               218-328, - strand, RNAz p=0.694249
               

               
               647-743, + strand, RNAz p=0.998397

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               218-328, - strand, RNAz p=0.694249
               

               
               647-743, + strand, RNAz p=0.998397

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               30-876, gnl|bosTau2|chr6 (7043386-7044227)
               

               
               30-876, gnl|Hg17|chr4 (104073773-104072904)
               

               
               30-876, gnl|Mm7|chr3 (135261585-135262410)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-876, gnl|bosTau2|chr6 (7043386-7044227)
               

               
               30-876, gnl|Hg17|chr4 (104073773-104072904)
               

               
               30-876, gnl|Mm7|chr3 (135261585-135262410)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               fcc (0.197785)
               

               
               ret (0.128733)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               ret (0.128733)
               

               
               ldo (0.0970026)

	218-328, - strand, RNAz p=0.694249
	647-743, + strand, RNAz p=0.998397

	30-876, gnl\|bosTau2\|chr6 (7043386-7044227)
	30-876, gnl\|Hg17\|chr4 (104073773-104072904)
	30-876, gnl\|Mm7\|chr3 (135261585-135262410)