Non-Coding RNA Search

Ss1.1-Pig4-TMW8019G09.5.5

Sequence:


               
               TTCCGATGCGGGACGGGGGAAATGGCGGTGGCCACCGTATTCCCGGCTCTTTCGCGGGGG
CTTGCTCTGTCAAGGCGCCACCTTGTGTCTCCTTTGTTCAGCGTGACATCCTTCAGACGC
TCCTACCGCTCCTACCGAGGTGACAGCCCAACAGATTCCCAAACGGACATGATTGAAATC
CCTTTGCCTCCGTGGCAGGAGCGAACGGATGAATCCATAGAGACCAAAAGAGCCCGCCTG
CTCTACGAGAGCAGAAAGAGGGGAATGCTGGAAAACTGCATCCTGCTTAGCCTCTTTGCT
AAGGAGCATCTGCACCAGATGACGGAGAAACAGCTGAATCTCTACGATCGCCTGATCAAT
GAACCCAGTAATGACTGGGATATTTATTACTGGGCTACAGAAGCAAAACCAGCCCCAGAA
ATATTTGAAAACGAAGTCCTGGCCCTGCTGAGAGACTTTGCTAAGAACAAGAACAGAGAG
CAGCGCCTGCGGGCCCCGGATCTCGAATACCTCTTTGAAAAGCCTCGTTGAGCTGCACCC
GGCTGCTGCCTGCCTGGCCTCCGGCCACGGTCGCTCGCTCCTCGCGATGGATCCCGGCCT
CGCTGTCCAGCTTTTCTCCTTAGACAGACGCTCAGCCCACCCAGACCGCTGGTCCTTCCA
CCCGGGACGGGCCCTCCTCACTCTGAGGACATGTAGGTGTCCAGGGTATCCCATTTTAAG
ACCTTTTGGCTCCATTCTAAGCCTCAGATGTGGTTGGTCCATGTTCCCGGTGCTCAGGCC
CACTGTTTCTCTGGCTCCCGTCTCCGCGGCAGGCCTCTGCCACAGGAGGCCACGGTAGGG
GAGCGACTGGGCCGCTCACTGCTTCAGCCAGAAGTGCGTTCGGTGGAAAGGAGCCACCAG
CTGCACCTGCCGTGCTGGTGGAACGCTCCTTGGGTGGCCCAGGGCTTTGTTCCGGTGAAA
CTCCCCCTTCCAACCCGGTGTGGTGCTTGCTGCCACGGGAAGCTGATCCAGGCCCCCCTA
CCCCCACCCCCAGCGGAATCCTTCAAAGGCCCAACAGGCAGAACGAGGGCAGCCAGCAGG
AATGGCGGGGCCATGCTGCTTCAGAAGCAACTTCCCCATCGGGTTTGCTCTAAAAGGTCC
CCTTTGTAAACTGAACGATAATTGACTATTAAAGAAGAGTTTAAAAAAGGAAAGTCACAG
AGTTCACTGGTGACCTCGTGGTTAAGGATCAGGCATTGTCACTGCTGTGGCTCCGGTCAC
TGCTGTGTCATGAGCTCCATCCCTGGCCTGGGAACTTCACGCGTTGTGAGTGAGGCCAAA
ATAATGATAATAAATAAATGAAAATCACATCTCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCGATGCGGGACGGGGGAAATGGCGGTGGCCACCGTATTCCCGGCTCTTTCGCGGGGG
CTTGCTCTGTCAAGGCGCCACCTTGTGTCTCCTTTGTTCAGCGTGACATCCTTCAGACGC
TCCTACCGCTCCTACCGAGGTGACAGCCCAACAGATTCCCAAACGGACATGATTGAAATC
CCTTTGCCTCCGTGGCAGGAGCGAACGGATGAATCCATAGAGACCAAAAGAGCCCGCCTG
CTCTACGAGAGCAGAAAGAGGGGAATGCTGGAAAACTGCATCCTGCTTAGCCTCTTTGCT
AAGGAGCATCTGCACCAGATGACGGAGAAACAGCTGAATCTCTACGATCGCCTGATCAAT
GAACCCAGTAATGACTGGGATATTTATTACTGGGCTACAGAAGCAAAACCAGCCCCAGAA
ATATTTGAAAACGAAGTCCTGGCCCTGCTGAGAGACTTTGCTAAGAACAAGAACAGAGAG
CAGCGCCTGCGGGCCCCGGATCTCGAATACCTCTTTGAAAAGCCTCGTTGAGCTGCACCC
GGCTGCTGCCTGCCTGGCCTCCGGCCACGGTCGCTCGCTCCTCGCGATGGATCCCGGCCT
CGCTGTCCAGCTTTTCTCCTTAGACAGACGCTCAGCCCACCCAGACCGCTGGTCCTTCCA
CCCGGGACGGGCCCTCCTCACTCTGAGGACATGTAGGTGTCCAGGGTATCCCATTTTAAG
ACCTTTTGGCTCCATTCTAAGCCTCAGATGTGGTTGGTCCATGTTCCCGGTGCTCAGGCC
CACTGTTTCTCTGGCTCCCGTCTCCGCGGCAGGCCTCTGCCACAGGAGGCCACGGTAGGG
GAGCGACTGGGCCGCTCACTGCTTCAGCCAGAAGTGCGTTCGGTGGAAAGGAGCCACCAG
CTGCACCTGCCGTGCTGGTGGAACGCTCCTTGGGTGGCCCAGGGCTTTGTTCCGGTGAAA
CTCCCCCTTCCAACCCGGTGTGGTGCTTGCTGCCACGGGAAGCTGATCCAGGCCCCCCTA
CCCCCACCCCCAGCGGAATCCTTCAAAGGCCCAACAGGCAGAACGAGGGCAGCCAGCAGG
AATGGCGGGGCCATGCTGCTTCAGAAGCAACTTCCCCATCGGGTTTGCTCTAAAAGGTCC
CCTTTGTAAACTGAACGATAATTGACTATTAAAGAAGAGTTTAAAAAAGGAAAGTCACAG
AGTTCACTGGTGACCTCGTGGTTAAGGATCAGGCATTGTCACTGCTGTGGCTCCGGTCAC
TGCTGTGTCATGAGCTCCATCCCTGGCCTGGGAACTTCACGCGTTGTGAGTGAGGCCAAA
ATAATGATAATAAATAAATGAAAATCACATCTCCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7020622|dbj|BAA91204.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7020622|dbj|BAA91204.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               60-290, gnl|bosTau2|chr29 (31028221-31028442)
               

               
               60-290, gnl|Hg17|chr11 (60961675-60961896)
               

               
               60-290, gnl|Mm7|chr19 (10197509-10197294)
               


               
               396-798, gnl|bosTau2|chr29 (31031851-31032249)
               

               
               396-798, gnl|Hg17|chr11 (60969979-60970414)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               60-290, gnl|bosTau2|chr29 (31028221-31028442)
               

               
               60-290, gnl|Hg17|chr11 (60961675-60961896)
               

               
               60-290, gnl|Mm7|chr19 (10197509-10197294)
               


               
               396-798, gnl|bosTau2|chr29 (31031851-31032249)
               

               
               396-798, gnl|Hg17|chr11 (60969979-60970414)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               fce (0.271592)
               

               
               ece (0.229305)
               

               
               col (0.195008)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               col (0.195008)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	60-290, gnl\|bosTau2\|chr29 (31028221-31028442)
	60-290, gnl\|Hg17\|chr11 (60961675-60961896)
	60-290, gnl\|Mm7\|chr19 (10197509-10197294)

	396-798, gnl\|bosTau2\|chr29 (31031851-31032249)
	396-798, gnl\|Hg17\|chr11 (60969979-60970414)

	fce (0.271592)
	ece (0.229305)
	col (0.195008)
	fhi (0.169578)
	nco (0.161734)
	eli (0.151814)
	pla (0.133672)
	nmm (0.132802)
	eep (0.122564)
	eru (0.120048)
	pgl (0.118483)
	jca (0.11396)
	cty (0.10408)
	nbm (0.0993246)