Ss1.1-Pig4-TMW8019G14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTTCACCACGCGGGCAGGAGACGCCGTGTCGTGCGTTTGCTTTGTTTTTCGAGGTGTTT GTCTTTTCCCTCCTCATTACCCACTTGACTTCCTCTTAGAAGGAAGATCTCTAAGCAGCC CACGTTGGGACAAAGGATTTGGAGCAACGCAGAAGGTGCCGCTTGCGGGAGCTGCGACTT GCTCTGTCTCAGCAACTCCTTCCATGGCAGTTCCCGAGACCCGTCCCAATCACACTATTT ATATCAACAATCTCAACGAGAAGATCAAGAAGGATGAGCTGAAGAAGTCCCTGTACGCCA TCTTCTCCCAGTTTGGCCAGATCCTGGATATCCTGGTCTCACGAAGCCTGAAGATGAGGG GCCAGGCCTTTGTCATCTTCAAGGAGGTCAGCAGCGCCACCAATGCCCTGCGCTCCATGC AGGGTTTCCCCTTCTACGACAAGCCCATGCGCATCCAGTACGCCAAGACCGACTCGGATA TCATCGCCAAGATGAAGGGCACCTTCGTGGAGCGGGACCGCAAGCGGGAGAAGAGGAAGC CCAAGAGCCAAGAGACCCCGGCCTCCAAGAAGGCCGTGCAGGGCGGGGCAGCCGCCCCCG TGGTGGGCGCCGTTCAGGGTCCTGTCCCGGGCATGCCGCCGATGACTCAGACACCCCGCA TCATGCACCACATGCCGGGCCAGCCTCCCTACATGCCGCCCCCTGGCATGATCCCGCCTC CAGGCCTCGCGCCCGGCCAGATCCCGCCCGGGGCCATGCCCCCCCAGCAGCTTATGCCTG GGCAGATGCCACCTGCCCAGCCTCTTTCAGAAAACCCACCAAATCACATCTTGTTCCTCA CCAACCTGCCGGAGGAGACCAACGAGCTCATGCTTTCCATGCTTTTCAACCAGTTCCCTG GCTTCAAGGAGGTCCGGCTGGTCCCTGGGCGGCACGACATCGCCTTTGTGGAGTTTGACA ACGAGGTGCAGGCGGGGGCCGCTCGCGATGCCCTGCAGGGCTTCAAGATCACCCAGAACA ACGCCATGAAGATCTCCTTCGCCAAGAAGTAGCGCCCTTTCCCCATGCCCACCCCTGCCC CCTGTTCTGGGGCCACCCCCGCTCCCCTCGGCTCAGTCCCCTGAAGGTAAGTCCCCCTCG GGGGCCTCCTTGGAGCCACGTGTGAGTGAATGGTACCCACACAGCATTGTACCCAGAGTC TGTTCCCAGACATTGCACCTGGAGCTGTTAGGCTGGAATTAAAGTGTTGTTTGTTTGTTT AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTTCACCACGCGGGCAGGAGACGCCGTGTCGTGCGTTTGCTTTGTTTTTCGAGGTGTTT GTCTTTTCCCTCCTCATTACCCACTTGACTTCCTCTTAGAAGGAAGATCTCTAAGCAGCC CACGTTGGGACAAAGGATTTGGAGCAACGCAGAAGGTGCCGCTTGCGGGAGCTGCGACTT GCTCTGTCTCAGCAACTCCTTCCATGGCAGTTCCCGAGACCCGTCCCAATCACACTATTT ATATCAACAATCTCAACGAGAAGATCAAGAAGGATGAGCTGAAGAAGTCCCTGTACGCCA TCTTCTCCCAGTTTGGCCAGATCCTGGATATCCTGGTCTCACGAAGCCTGAAGATGAGGG GCCAGGCCTTTGTCATCTTCAAGGAGGTCAGCAGCGCCACCAATGCCCTGCGCTCCATGC AGGGTTTCCCCTTCTACGACAAGCCCATGCGCATCCAGTACGCCAAGACCGACTCGGATA TCATCGCCAAGATGAAGGGCACCTTCGTGGAGCGGGACCGCAAGCGGGAGAAGAGGAAGC CCAAGAGCCAAGAGACCCCGGCCTCCAAGAAGGCCGTGCAGGGCGGGGCAGCCGCCCCCG TGGTGGGCGCCGTTCAGGGTCCTGTCCCGGGCATGCCGCCGATGACTCAGACACCCCGCA TCATGCACCACATGCCGGGCCAGCCTCCCTACATGCCGCCCCCTGGCATGATCCCGCCTC CAGGCCTCGCGCCCGGCCAGATCCCGCCCGGGGCCATGCCCCCCCAGCAGCTTATGCCTG GGCAGATGCCACCTGCCCAGCCTCTTTCAGAAAACCCACCAAATCACATCTTGTTCCTCA CCAACCTGCCGGAGGAGACCAACGAGCTCATGCTTTCCATGCTTTTCAACCAGTTCCCTG GCTTCAAGGAGGTCCGGCTGGTCCCTGGGCGGCACGACATCGCCTTTGTGGAGTTTGACA ACGAGGTGCAGGCGGGGGCCGCTCGCGATGCCCTGCAGGGCTTCAAGATCACCCAGAACA ACGCCATGAAGATCTCCTTCGCCAAGAAGTAGCGCCCTTTCCCCATGCCCACCCCTGCCC CCTGTTCTGGGGCCACCCCCGCTCCCCTCGGCTCAGTCCCCTGAAGGTAAGTCCCCCTCG GGGGCCTCCTTGGAGCCACGTGTGAGTGAATGGTACCCACACAGCATTGTACCCAGAGTC TGTTCCCAGACATTGCACCTGGAGCTGTTAGGCTGGAATTAAAGTGTTGTTTGTTTGTTT AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 315-434, + strand, RNAz p=0.821314 | |
| 629-803, - strand, RNAz p=0.97156 | |
| 668-803, - strand, RNAz p=0.977093 | |
| 1038-1260, - strand, RNAz p=0.996613 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 315-434, + strand, RNAz p=0.821314 | |
| 629-803, - strand, RNAz p=0.97156 | |
| 668-803, - strand, RNAz p=0.977093 | |
| 1038-1260, - strand, RNAz p=0.996613 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 276-449, gnl|bosTau2|chr18 (45462670-45462843) | |
| 276-449, gnl|Hg17|chr19 (45955076-45955249) | |
| 276-449, gnl|Mm7|chr7 (24111902-24111729) | |
| 629-803, gnl|bosTau2|chr18 (45467429-45467603) | |
| 629-803, gnl|canFam2|chr1 (115929302-115929117) | |
| 629-803, gnl|danRer3|chr10 (29740322-29740485) | |
| 629-803, gnl|dasNov1|scaffold_50826 (11827-11651) | |
| 629-803, gnl|echTel1|scaffold_175713 (2962-2776) | |
| 629-803, gnl|fr1|chrUn (183712332-183712173) | |
| 629-803, gnl|hg17|chr19 (45960624-45960809) | |
| 629-803, gnl|Hg17|chr19 (45960645-45960819) | |
| 629-803, gnl|mm7|chr7 (24108416-24108230) | |
| 629-803, gnl|Mm7|chr7 (24108392-24108218) | |
| 629-803, gnl|monDom2|scaffold_149 (378128-378318) | |
| 629-803, gnl|panTro1|chr20 (42921036-42921221) | |
| 629-803, gnl|rheMac2|chr19 (47129439-47129624) | |
| 629-803, gnl|rn3|chr1 (82346275-82346091) | |
| 629-803, gnl|tetNig1|chr16 (1815347-1815188) | |
| 629-803, gnl|xenTro1|scaffold_728 (460505-460667) | |
| 880-1260, gnl|bosTau2|chr18 (45469442-45469823) | |
| 880-1260, gnl|Hg17|chr19 (45962739-45963122) | |
| 880-1260, gnl|Mm7|chr7 (24106237-24105874) | |
| 893-1051, gnl|bosTau2|chr13 (4958083-4958241) | |
| 893-1051, gnl|canFam2|chr24 (9105209-9105018) | |
| 893-1051, gnl|danRer3|chr10 (29742016-29742177) | |
| 893-1051, gnl|dasNov1|scaffold_2389 (69602-69789) | |
| 893-1051, gnl|echTel1|scaffold_300682 (12460-12653) | |
| 893-1051, gnl|fr1|chrUn (183711903-183711742) | |
| 893-1051, gnl|galGal2|chr3 (5470598-5470791) | |
| 893-1051, gnl|hg17|chr20 (16669484-16669676) | |
| 893-1051, gnl|Hg17|chr20 (16669491-16669649) | |
| 893-1051, gnl|loxAfr1|scaffold_76077 (7562-7751) | |
| 893-1051, gnl|mm7|chr2 (142812246-142812435) | |
| 893-1051, gnl|Mm7|chr2 (142812253-142812411) | |
| 893-1051, gnl|monDom2|scaffold_1 (50997721-50997913) | |
| 893-1051, gnl|oryCun1|scaffold_206507 (370698-370505) | |
| 893-1051, gnl|panTro1|chr21 (16519759-16519951) | |
| 893-1051, gnl|rheMac2|chr10 (50076798-50076990) | |
| 893-1051, gnl|rn3|chr3 (131331226-131331417) | |
| 893-1051, gnl|tetNig1|chrUn_random (84193655-84193488) | |
| 893-1051, gnl|xenTro1|scaffold_112 (1810923-1810734) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 276-449, gnl|bosTau2|chr18 (45462670-45462843) | |
| 276-449, gnl|Hg17|chr19 (45955076-45955249) | |
| 276-449, gnl|Mm7|chr7 (24111902-24111729) | |
| 629-803, gnl|bosTau2|chr18 (45467429-45467603) | |
| 629-803, gnl|canFam2|chr1 (115929302-115929117) | |
| 629-803, gnl|danRer3|chr10 (29740322-29740485) | |
| 629-803, gnl|dasNov1|scaffold_50826 (11827-11651) | |
| 629-803, gnl|echTel1|scaffold_175713 (2962-2776) | |
| 629-803, gnl|fr1|chrUn (183712332-183712173) | |
| 629-803, gnl|hg17|chr19 (45960624-45960809) | |
| 629-803, gnl|Hg17|chr19 (45960645-45960819) | |
| 629-803, gnl|mm7|chr7 (24108416-24108230) | |
| 629-803, gnl|Mm7|chr7 (24108392-24108218) | |
| 629-803, gnl|monDom2|scaffold_149 (378128-378318) | |
| 629-803, gnl|panTro1|chr20 (42921036-42921221) | |
| 629-803, gnl|rheMac2|chr19 (47129439-47129624) | |
| 629-803, gnl|rn3|chr1 (82346275-82346091) | |
| 629-803, gnl|tetNig1|chr16 (1815347-1815188) | |
| 629-803, gnl|xenTro1|scaffold_728 (460505-460667) | |
| 880-1260, gnl|bosTau2|chr18 (45469442-45469823) | |
| 880-1260, gnl|Hg17|chr19 (45962739-45963122) | |
| 880-1260, gnl|Mm7|chr7 (24106237-24105874) | |
| 893-1051, gnl|bosTau2|chr13 (4958083-4958241) | |
| 893-1051, gnl|canFam2|chr24 (9105209-9105018) | |
| 893-1051, gnl|danRer3|chr10 (29742016-29742177) | |
| 893-1051, gnl|dasNov1|scaffold_2389 (69602-69789) | |
| 893-1051, gnl|echTel1|scaffold_300682 (12460-12653) | |
| 893-1051, gnl|fr1|chrUn (183711903-183711742) | |
| 893-1051, gnl|galGal2|chr3 (5470598-5470791) | |
| 893-1051, gnl|hg17|chr20 (16669484-16669676) | |
| 893-1051, gnl|Hg17|chr20 (16669491-16669649) | |
| 893-1051, gnl|loxAfr1|scaffold_76077 (7562-7751) | |
| 893-1051, gnl|mm7|chr2 (142812246-142812435) | |
| 893-1051, gnl|Mm7|chr2 (142812253-142812411) | |
| 893-1051, gnl|monDom2|scaffold_1 (50997721-50997913) | |
| 893-1051, gnl|oryCun1|scaffold_206507 (370698-370505) | |
| 893-1051, gnl|panTro1|chr21 (16519759-16519951) | |
| 893-1051, gnl|rheMac2|chr10 (50076798-50076990) | |
| 893-1051, gnl|rn3|chr3 (131331226-131331417) | |
| 893-1051, gnl|tetNig1|chrUn_random (84193655-84193488) | |
| 893-1051, gnl|xenTro1|scaffold_112 (1810923-1810734) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| mcp (0.341297) | |
| nca (0.273748) | |
| jej (0.197844) | |
| nep (0.183925) | |
| ill (0.175593) | |
| fhi (0.169578) | |
| eru (0.120048) | |
| med (0.116252) | |
| eje (0.0988338) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.341297) | |
| nca (0.273748) | |
| jej (0.197844) | |
| nep (0.183925) | |
| ill (0.175593) | |
| fhi (0.169578) | |
| eru (0.120048) | |
| med (0.116252) | |
| eje (0.0988338) |