Non-Coding RNA Search

Ss1.1-Pig4-TMW8019G15.5

Sequence:


               
               AGCTTTTAAGGCATTGCATGGCTCTTGGTTTGATGGGAAATTGGTTACAGTAAAATATTT
ACGACTAGATAGATATCACCATCGCTTTCCCCAAGCTCTTACTTGCAACACTCCCTTGAA
GCCATCAAATAAACATATGAACTCTATGTCTCATCTTCGTCTTCGGACTGGCCTAGCCAA
TTCGCAAGGAGGTTCCTGAAAAGACTTTCTTCCACTCCTAGGACTGTTCTTTACAATAGG
AAAACTCCTGTTTGGCTTTCTGTCTCCTTTTTTAAATGCTTTTTGTATGTATTTTTATTG
AATACAGCGCTGTTTGAATGTTTCAGAAATCTTAAGGTTCCAAAGGGACTTAGCAGTGAG
GCAGCAATGCTGAGTACATAGAATAATTCTTTCATTCAGTTTTTGGAGCTCAGTTAAGCC
AATGCACTTAAAGTTTTGCATGAGGAACATTGACCTTATTAAGCATTTTCAGATGTGGTG
GTTGTATTTTTGCACCAAGAAGTGTTTGGATAACCACACAAAAGCATGGTGAAAAGGCTT
CTTGTATTTCCATAATTTCCTGTAAACTAATGTTGTGAATTTTTGTATACAGTCACCTAT
ATAGTTCTTTACAGGCTAATGTGGTAAAACTGTTAATTTCCCAATTTAATCTTAGGTTTC
TGTTGCTTGTAAGAGATTCATTTGTTACCGCTGGAATATGAGAAAAATCATTTTGGGTTT
AGTGGTTACATATAAGTATAAGAGGATGTACATGTACTTAAACTGGCTTTTGTATATATG
TATAAATGCTGGTGATGGCGAAAGTAGTCTTGTTTTGTGAGGATGTCTCATTAAAGCAGT
AAAATAAGCTTCCTATTTTATTCATAATCTAATGTATGTGTATATATGTATGTGTATATA
TGTGTGTATGTATATATATGTATGTGTATATGTGTATATATACACACACATATATACATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTTTTAAGGCATTGCATGGCTCTTGGTTTGATGGGAAATTGGTTACAGTAAAATATTT
ACGACTAGATAGATATCACCATCGCTTTCCCCAAGCTCTTACTTGCAACACTCCCTTGAA
GCCATCAAATAAACATATGAACTCTATGTCTCATCTTCGTCTTCGGACTGGCCTAGCCAA
TTCGCAAGGAGGTTCCTGAAAAGACTTTCTTCCACTCCTAGGACTGTTCTTTACAATAGG
AAAACTCCTGTTTGGCTTTCTGTCTCCTTTTTTAAATGCTTTTTGTATGTATTTTTATTG
AATACAGCGCTGTTTGAATGTTTCAGAAATCTTAAGGTTCCAAAGGGACTTAGCAGTGAG
GCAGCAATGCTGAGTACATAGAATAATTCTTTCATTCAGTTTTTGGAGCTCAGTTAAGCC
AATGCACTTAAAGTTTTGCATGAGGAACATTGACCTTATTAAGCATTTTCAGATGTGGTG
GTTGTATTTTTGCACCAAGAAGTGTTTGGATAACCACACAAAAGCATGGTGAAAAGGCTT
CTTGTATTTCCATAATTTCCTGTAAACTAATGTTGTGAATTTTTGTATACAGTCACCTAT
ATAGTTCTTTACAGGCTAATGTGGTAAAACTGTTAATTTCCCAATTTAATCTTAGGTTTC
TGTTGCTTGTAAGAGATTCATTTGTTACCGCTGGAATATGAGAAAAATCATTTTGGGTTT
AGTGGTTACATATAAGTATAAGAGGATGTACATGTACTTAAACTGGCTTTTGTATATATG
TATAAATGCTGGTGATGGCGAAAGTAGTCTTGTTTTGTGAGGATGTCTCATTAAAGCAGT
AAAATAAGCTTCCTATTTTATTCATAATCTAATGTATGTGTATATATGTATGTGTATATA
TGTGTGTATGTATATATATGTATGTGTATATGTGTATATATACACACACATATATACATA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47217218|emb|CAF96741.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47217218|emb|CAF96741.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               154-273, - strand, RNAz p=0.734555
               

               
               543-702, - strand, RNAz p=0.945472
               

               
               743-861, + strand, RNAz p=0.694608

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               154-273, - strand, RNAz p=0.734555
               

               
               543-702, - strand, RNAz p=0.945472
               

               
               743-861, + strand, RNAz p=0.694608

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_014319, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_014319, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               35-960, gnl|bosTau2|chr5 (30385492-30386425)
               

               
               35-960, gnl|Hg17|chr12 (63926208-63927123)
               

               
               35-960, gnl|Mm7|chr10 (120321785-120320866)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               35-960, gnl|bosTau2|chr5 (30385492-30386425)
               

               
               35-960, gnl|Hg17|chr12 (63926208-63927123)
               

               
               35-960, gnl|Mm7|chr10 (120321785-120320866)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               liv (0.146284)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)

	154-273, - strand, RNAz p=0.734555
	543-702, - strand, RNAz p=0.945472
	743-861, + strand, RNAz p=0.694608

	35-960, gnl\|bosTau2\|chr5 (30385492-30386425)
	35-960, gnl\|Hg17\|chr12 (63926208-63927123)
	35-960, gnl\|Mm7\|chr10 (120321785-120320866)