Ss1.1-Pig4-TMW8019G18.5
|
AACATGGCGGCGGCGGAGCCGGCGGTCCCGGCGCTCCCGGGCGGCGGCGCGGGCGCGGGG
GCGCCGTCGGGTACGGTCCCCGTGCTCTTCTGCTTCTCCGTCTTCGCGCGGCCCTCGGCC
GTGCCGCACGGCGCGGGTTACGAGCTGCTTATCCAGAAGTTCCTCAGCCTGTACGGCGAC
CAGATCGACATGCACCGCAAATTCGTGGTGCAGCTCTTCGCGGAGGAGTGGGGCCAGTAC
GTGGACCTGCCCAAGGGCTTCGCGGTGAGCGAGCGCTGCAAGGTGCGCCTCGTGCCGCTG
CAGATCCAGCTCACTACCCTGGGAAATCTTACACCTTCAAGCACTGTGTTTTTCTGCTGT
GATATGCAGGAAAGGTTCAGACCAGCCATCAAGTATTTTGGAGATATTATTAGTGTGAGC
CAAAGATTGTTACAAGGGGCCCGGATTTTAGGAATTCCAGTTATCGTAACAGAACAGTAC
CCTAAAGGTCTTGGAAGCACTGTTCAAGAAATCGATTTAACAGGAGTAAAACTGGTTCTT
CCCAAGACCAAGTTTTCGATGGTATTACCAGAAGTAGAAGCAGCATTAGCAGAGATTCCT
GGAGTCCGGAGTGTTGTGTTATTTGGAGTGGAAACTCATGTGTGCATCCAGCAAACAGCT
CTGGAGCTCGTTGGCCGAGGTATCGAGGTTCATATCGTTGCTGACGCCACGTCATCAAGA
AGCATGATGGACAGGATGTTTGCTCTTGAGCGTCTTGCTCGAACTGGGATCATAGTGACG
ACAAGTGAGGCGGTCCTGCTACAGCTGGTGGCTGATAAAGACCATCCAAAATTCAAGGAA
ATTCAGAATCTAATTAAGGCGAGTGCTCCAGAGTCGGGTCTGCTCTCCAAAGTATAGGAT
GTTAGAAAGACTGGGATGCCACTCGCCGTCAGGTGGCAGGACCATAAGCCCAGACAAGCT
CTTGTCTCTACTAGAATTAAAATATTAAGGCAAAAACTGGCTCCTTTTGCGCCTCTTAGT
TCAAACTTAACTGGTTAGACCATTGGGGTACCAGCATTTAGTTACAGATGTCAAAGGCTT
CAGGTGCTGCTTACCTTTTTATGTTCATGTGCTTTTATTTATTAAAAAGAAATTATCATG
GAGGTGCCTGTTTTGTCTATACCGTATATACTGATCATACTTTCAGAAGTGCACACTCTT
GTGACGTCCTCTTGTGCACAGTGAAGACAAAGAAATACCAGTGATGGTTTGACTTTCGTG
TTATTCTAAGGTGTATGTTACAACGTTAATGTGCAGTCAGTGCTTTTACTTTACAGGTTG
ATTGAAATAGGATTATTATATGAGAATTTAAAAACAGGACTCTGGATCTTGTCACCCCTT
TCCCTCTCAGTGCAGTCCACTTATTTATTAAATGGCATTGATTTTACCAGATGAAGTTAC
GTGAAATAATTATATCGCTTTCCTAATTACGCTAACTTTTTCTGCTCACCAGTCACTGAT
CTTCTGTTAATGTCTCTTTTTTTAACTGACTCTTTTACCTGGAAAGACTCGTGGGGTCAT
TGCTTGTTTTAATTTTGGAAACAGATGGGATGGCTTGCAGTGCCATATAATTAGTGGAAG
GTGATTTTAAGATCTTTGAAGTATTGCTTTAACTGAGTAGCTTTATAACCATCTTGTGCA
AGATTTAGCGAAAAGATAAAGGCTGGATAAAATGTAGTTTTGAAACATCCACATTGTTTG
ATATTTTTTCCACCTACCTTCTAATTTTTGTTACTGCAAAAGGCCTCAATAATGATTTGG
TAGTATTAATTTTGTCGTCATTACTACCCTTCAATAAATTTTATTTTCACTAAAAAAAAA
TTGTAGTGTTTTAAAATTTTTTTTTAAATACTATGTGAAATACGGAACATTGCTGTCTTT
TATATTAAAGTA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AACATGGCGGCGGCGGAGCCGGCGGTCCCGGCGCTCCCGGGCGGCGGCGCGGGCGCGGGG
GCGCCGTCGGGTACGGTCCCCGTGCTCTTCTGCTTCTCCGTCTTCGCGCGGCCCTCGGCC
GTGCCGCACGGCGCGGGTTACGAGCTGCTTATCCAGAAGTTCCTCAGCCTGTACGGCGAC
CAGATCGACATGCACCGCAAATTCGTGGTGCAGCTCTTCGCGGAGGAGTGGGGCCAGTAC
GTGGACCTGCCCAAGGGCTTCGCGGTGAGCGAGCGCTGCAAGGTGCGCCTCGTGCCGCTG
CAGATCCAGCTCACTACCCTGGGAAATCTTACACCTTCAAGCACTGTGTTTTTCTGCTGT
GATATGCAGGAAAGGTTCAGACCAGCCATCAAGTATTTTGGAGATATTATTAGTGTGAGC
CAAAGATTGTTACAAGGGGCCCGGATTTTAGGAATTCCAGTTATCGTAACAGAACAGTAC
CCTAAAGGTCTTGGAAGCACTGTTCAAGAAATCGATTTAACAGGAGTAAAACTGGTTCTT
CCCAAGACCAAGTTTTCGATGGTATTACCAGAAGTAGAAGCAGCATTAGCAGAGATTCCT
GGAGTCCGGAGTGTTGTGTTATTTGGAGTGGAAACTCATGTGTGCATCCAGCAAACAGCT
CTGGAGCTCGTTGGCCGAGGTATCGAGGTTCATATCGTTGCTGACGCCACGTCATCAAGA
AGCATGATGGACAGGATGTTTGCTCTTGAGCGTCTTGCTCGAACTGGGATCATAGTGACG
ACAAGTGAGGCGGTCCTGCTACAGCTGGTGGCTGATAAAGACCATCCAAAATTCAAGGAA
ATTCAGAATCTAATTAAGGCGAGTGCTCCAGAGTCGGGTCTGCTCTCCAAAGTATAGGAT
GTTAGAAAGACTGGGATGCCACTCGCCGTCAGGTGGCAGGACCATAAGCCCAGACAAGCT
CTTGTCTCTACTAGAATTAAAATATTAAGGCAAAAACTGGCTCCTTTTGCGCCTCTTAGT
TCAAACTTAACTGGTTAGACCATTGGGGTACCAGCATTTAGTTACAGATGTCAAAGGCTT
CAGGTGCTGCTTACCTTTTTATGTTCATGTGCTTTTATTTATTAAAAAGAAATTATCATG
GAGGTGCCTGTTTTGTCTATACCGTATATACTGATCATACTTTCAGAAGTGCACACTCTT
GTGACGTCCTCTTGTGCACAGTGAAGACAAAGAAATACCAGTGATGGTTTGACTTTCGTG
TTATTCTAAGGTGTATGTTACAACGTTAATGTGCAGTCAGTGCTTTTACTTTACAGGTTG
ATTGAAATAGGATTATTATATGAGAATTTAAAAACAGGACTCTGGATCTTGTCACCCCTT
TCCCTCTCAGTGCAGTCCACTTATTTATTAAATGGCATTGATTTTACCAGATGAAGTTAC
GTGAAATAATTATATCGCTTTCCTAATTACGCTAACTTTTTCTGCTCACCAGTCACTGAT
CTTCTGTTAATGTCTCTTTTTTTAACTGACTCTTTTACCTGGAAAGACTCGTGGGGTCAT
TGCTTGTTTTAATTTTGGAAACAGATGGGATGGCTTGCAGTGCCATATAATTAGTGGAAG
GTGATTTTAAGATCTTTGAAGTATTGCTTTAACTGAGTAGCTTTATAACCATCTTGTGCA
AGATTTAGCGAAAAGATAAAGGCTGGATAAAATGTAGTTTTGAAACATCCACATTGTTTG
ATATTTTTTCCACCTACCTTCTAATTTTTGTTACTGCAAAAGGCCTCAATAATGATTTGG
TAGTATTAATTTTGTCGTCATTACTACCCTTCAATAAATTTTATTTTCACTAAAAAAAAA
TTGTAGTGTTTTAAAATTTTTTTTTAAATACTATGTGAAATACGGAACATTGCTGTCTTT
TATATTAAAGTA
|
|
gi|33878369|gb|AAH14105.2| |
Protein identifier
|
gi|33878369|gb|AAH14105.2| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-324, gnl|bosTau2|chr7 (22505864-22505538) |
|
1-324, gnl|Hg17|chr5 (128458356-128458682) |
|
1-324, gnl|Mm7|chr18 (59048174-59048490) |
| |
|
429-633, gnl|bosTau2|chr7 (22495386-22495182) |
|
429-633, gnl|canFam2|chr11 (21026513-21026803) |
|
429-633, gnl|danRer3|chrUn (176094508-176094731) |
|
429-633, gnl|dasNov1|scaffold_25919 (2531-2279) |
|
429-633, gnl|fr1|chrUn (163567776-163567515) |
|
429-633, gnl|galGal2|chr10_random (1320438-1320130) |
|
429-633, gnl|hg17|chr5 (128468692-128468941) |
|
429-633, gnl|Hg17|chr5 (128468776-128468980) |
|
429-633, gnl|mm7|chr18 (59060074-59060334) |
|
429-633, gnl|Mm7|chr18 (59060169-59060373) |
|
429-633, gnl|monDom2|scaffold_93 (2809821-2809574) |
|
429-633, gnl|oryCun1|scaffold_200185 (64755-64508) |
|
429-633, gnl|panTro1|chr4 (134820483-134820734) |
|
429-633, gnl|rheMac2|chr6 (125501855-125502103) |
|
429-633, gnl|rn3|chr18 (54546636-54546901) |
|
429-633, gnl|xenTro1|scaffold_2 (2645585-2645341) |
| |
|
745-1932, gnl|bosTau2|chr7 (22487510-22486297) |
|
745-1932, gnl|Hg17|chr5 (128476444-128477609) |
|
745-1932, gnl|Mm7|chr18 (59066486-59067667) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-324, gnl|bosTau2|chr7 (22505864-22505538) |
|
1-324, gnl|Hg17|chr5 (128458356-128458682) |
|
1-324, gnl|Mm7|chr18 (59048174-59048490) |
| |
|
429-633, gnl|bosTau2|chr7 (22495386-22495182) |
|
429-633, gnl|canFam2|chr11 (21026513-21026803) |
|
429-633, gnl|danRer3|chrUn (176094508-176094731) |
|
429-633, gnl|dasNov1|scaffold_25919 (2531-2279) |
|
429-633, gnl|fr1|chrUn (163567776-163567515) |
|
429-633, gnl|galGal2|chr10_random (1320438-1320130) |
|
429-633, gnl|hg17|chr5 (128468692-128468941) |
|
429-633, gnl|Hg17|chr5 (128468776-128468980) |
|
429-633, gnl|mm7|chr18 (59060074-59060334) |
|
429-633, gnl|Mm7|chr18 (59060169-59060373) |
|
429-633, gnl|monDom2|scaffold_93 (2809821-2809574) |
|
429-633, gnl|oryCun1|scaffold_200185 (64755-64508) |
|
429-633, gnl|panTro1|chr4 (134820483-134820734) |
|
429-633, gnl|rheMac2|chr6 (125501855-125502103) |
|
429-633, gnl|rn3|chr18 (54546636-54546901) |
|
429-633, gnl|xenTro1|scaffold_2 (2645585-2645341) |
| |
|
745-1932, gnl|bosTau2|chr7 (22487510-22486297) |
|
745-1932, gnl|Hg17|chr5 (128476444-128477609) |
|
745-1932, gnl|Mm7|chr18 (59066486-59067667) |
|
liv (0.585137) |
|
elu (0.385356) |
|
mgm (0.360685) |
|
fat (0.294855) |
|
ret (0.257467) |
|
tra (0.246184) |
|
jca (0.22792) |
|
tes (0.207814) |
|
fcc (0.197785) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
cki (0.165235) |
|
nco (0.161734) |
|
isp (0.150376) |
|
ski (0.146735) |
|
lin (0.145603) |
|
che (0.136314) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
sug (0.127291) |
|
ese (0.126502) |
|
bla (0.124347) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
med (0.116252) |
|
cbl (0.114797) |
|
liv (0.585137) |
|
elu (0.385356) |
|
mgm (0.360685) |
|
fat (0.294855) |
|
ret (0.257467) |
|
tra (0.246184) |
|
jca (0.22792) |
|
tes (0.207814) |
|
fcc (0.197785) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
cki (0.165235) |
|
nco (0.161734) |
|
isp (0.150376) |
|
ski (0.146735) |
|
lin (0.145603) |
|
che (0.136314) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
sug (0.127291) |
|
ese (0.126502) |
|
bla (0.124347) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
med (0.116252) |
|
cbl (0.114797) |
