Non-Coding RNA Search

Ss1.1-Pig4-TMW8019G22.3

Sequence:


               
               GACAGGACTTATTACTAGGAATCACAAAGACCAATCATCATTGCTTTTTTTTTAAGATTG
TGTTTTATAAGAAAACATTTAAATGTGTGCAGCTACTATTTTCTTATGGAAAAGACTTTG
AAAGTTTAAAGCATCATAGCAAATAATCAGTACTAAAAGTTTTTTGTTCACACTGAGATA
CTGTGTATGCAAAATGCCTTAATTATTAATAAGCCAATGTGTATGATACCAATAACTGTT
TAAGAAAACTAAAAGTAACCATGCTTCTGGCATGATAAAATCATGGAATTAAATCAGGGG
TTTCCATTCATGGAGAATATTATTGTTAAAACTTATTTCACACCATTCTTAAAACCTGAG
AATATTTTTAATATCTCTGACTTTTTTTTTGCCAGAATCATCATGTCATGTATGTATGTG
TTACTCCTATATGTAAGAAAAAGATGAATATGTATTTGTATGAATGCTTAACTGGAAGTG
TCCATGGAGTTGGCTAATTTATATTCACTTTTTATTGTATATAGATTTCTAATATTTTCA
GTTCTGTATCATTTAAGTTTCTTCATTTGAGTAAATTCACTAAATATTTCTATTTTTGCT
TTTTAAAATTCTGATTCTATATGAATTCTGATTTTTTTTCACTACATGTTTAAAGAATTA
CATACACTGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAGGACTTATTACTAGGAATCACAAAGACCAATCATCATTGCTTTTTTTTTAAGATTG
TGTTTTATAAGAAAACATTTAAATGTGTGCAGCTACTATTTTCTTATGGAAAAGACTTTG
AAAGTTTAAAGCATCATAGCAAATAATCAGTACTAAAAGTTTTTTGTTCACACTGAGATA
CTGTGTATGCAAAATGCCTTAATTATTAATAAGCCAATGTGTATGATACCAATAACTGTT
TAAGAAAACTAAAAGTAACCATGCTTCTGGCATGATAAAATCATGGAATTAAATCAGGGG
TTTCCATTCATGGAGAATATTATTGTTAAAACTTATTTCACACCATTCTTAAAACCTGAG
AATATTTTTAATATCTCTGACTTTTTTTTTGCCAGAATCATCATGTCATGTATGTATGTG
TTACTCCTATATGTAAGAAAAAGATGAATATGTATTTGTATGAATGCTTAACTGGAAGTG
TCCATGGAGTTGGCTAATTTATATTCACTTTTTATTGTATATAGATTTCTAATATTTTCA
GTTCTGTATCATTTAAGTTTCTTCATTTGAGTAAATTCACTAAATATTTCTATTTTTGCT
TTTTAAAATTCTGATTCTATATGAATTCTGATTTTTTTTCACTACATGTTTAAAGAATTA
CATACACTGCTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               270-385, + strand, RNAz p=0.956313

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               270-385, + strand, RNAz p=0.956313

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC026234, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC026234, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-672, gnl|bosTau2|chr10 (17422829-17423510)
               

               
               1-672, gnl|Hg17|chr15 (32221476-32220807)
               

               
               1-672, gnl|Mm7|chr2 (112263003-112263660)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-672, gnl|bosTau2|chr10 (17422829-17423510)
               

               
               1-672, gnl|Hg17|chr15 (32221476-32220807)
               

               
               1-672, gnl|Mm7|chr2 (112263003-112263660)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mga (0.32041)
               

               
               lin (0.145603)
               

               
               ute (0.132784)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.32041)
               

               
               lin (0.145603)
               

               
               ute (0.132784)

	1-672, gnl\|bosTau2\|chr10 (17422829-17423510)
	1-672, gnl\|Hg17\|chr15 (32221476-32220807)
	1-672, gnl\|Mm7\|chr2 (112263003-112263660)