Non-Coding RNA Search

Ss1.1-Pig4-TMW8019H06.3

Sequence:


               
               TTAGTTCGCGGTCACCTGAGCTCTGGCAACTCGGCTGCGGCAGGCTTGGGGGATACTCGC
CCTCCGCGGGTTCTGTCTGGCGACCCCGCCTTCTCTTGTTCATCGGCTCCGCCATCCCGA
ACACTCCAAAGGCCTGTCCGTTCTCTCCTGTCCTTTCCCAGTCGCGGGCCGGACCGGGCC
GAGCCGGGCAGCACGGGAGCGGTTTCTGACCATGGCGTCCCTCTTCAAGAAGAAAACCGT
GGATGATGTAATAAAAGAACAGAATCGAGAGTTACGAGGCACACAGAGAGCTATAATCAG
AGATCGGGCAGCTTTAGAGAAACAAGAAAAACAGCTGGAATTAGAAATTAAGAAAATGGC
CAAGATTGGTAATAAAGAAGCTTGTAGAGTTTTAGCCAAACAACTTGTACATCTAAGGAA
ACAGAAAACAAGAACTTTTGCTGTAAGTTCAAAAGTCACTTCTATGTCCACACAAACAAA
AGTGATGAATTCCCAGATGAAGATGGCAGGAGCAATGTCTACTACAGCAAAAACAATGCA
GGCAGTTAACAAGAAGATGGATCCACAAAAGACATTACAAACAATGCAGAATTTTCAGAA
GGAAAACATGAAAATGGAAATGACTGAAGAAATGATCAATGACACACTCGATGACATCTT
TGATGGCTCTGATGATGAAGAAGAAAGCCAAGATATTGTGAATCAAGTTCTTGATGAAAT
TGGAATTGAAATCTCTGGAAAGATGGCCAAAGCTCCATCAGCTGCCCGAAGCTTACCATC
TGCATCTACTTCAAAGGCTACAATCTCCGATGAAGAGATTGAACGGCAACTCAAAGCTTT
AGGAGTAGATTAATCAAAAAAGCCATTATATTTTGCTTATTATAATTTTTTAGTATAAAC
CAGGCACAGTGCAGATTCCTTTTACAAAACACATTTATTTTGCAAAAATGAAGACCATGA
GTAAACAGTTGTTTCCTAACCCATGGCTATTTTGAATCTTTTGCCAAAGAATGACAATGA
TATACAAATGGGAACAGTTTGGATTTTAATTAGAACTGTTTAGGGTGATGATATGTAAAA
AGTTGACTTCTTTTCTGCATGGCATATAGAATTTATATACATTACTTAGTGTAGTTTATG
TTCTTAAGTCTTTTTACACTGAATACAAATCTTGTTAAAGCCACCAGGCATGGACTTAAA
GAGACTTGTAAAAATATTAAAATATGTCATTAATTCCGTATCTGTTACTTGTTCTTTGTA
AGTGGTATGTGTTATGACCATAGGCCAAATTATTTTTAAGTCATCTAAAAGAAAAGTGCT
ATTTAAACATCTGTCTTAAAAACTGTTAAGAGCTTTTCTTCTCTCTTTTTTTTCCTTTGG
GAGAACATTGTAGTTGGTAAGTTTATTACCTTTCAAAATGTACTTGGCACCTGCCTTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAGTTCGCGGTCACCTGAGCTCTGGCAACTCGGCTGCGGCAGGCTTGGGGGATACTCGC
CCTCCGCGGGTTCTGTCTGGCGACCCCGCCTTCTCTTGTTCATCGGCTCCGCCATCCCGA
ACACTCCAAAGGCCTGTCCGTTCTCTCCTGTCCTTTCCCAGTCGCGGGCCGGACCGGGCC
GAGCCGGGCAGCACGGGAGCGGTTTCTGACCATGGCGTCCCTCTTCAAGAAGAAAACCGT
GGATGATGTAATAAAAGAACAGAATCGAGAGTTACGAGGCACACAGAGAGCTATAATCAG
AGATCGGGCAGCTTTAGAGAAACAAGAAAAACAGCTGGAATTAGAAATTAAGAAAATGGC
CAAGATTGGTAATAAAGAAGCTTGTAGAGTTTTAGCCAAACAACTTGTACATCTAAGGAA
ACAGAAAACAAGAACTTTTGCTGTAAGTTCAAAAGTCACTTCTATGTCCACACAAACAAA
AGTGATGAATTCCCAGATGAAGATGGCAGGAGCAATGTCTACTACAGCAAAAACAATGCA
GGCAGTTAACAAGAAGATGGATCCACAAAAGACATTACAAACAATGCAGAATTTTCAGAA
GGAAAACATGAAAATGGAAATGACTGAAGAAATGATCAATGACACACTCGATGACATCTT
TGATGGCTCTGATGATGAAGAAGAAAGCCAAGATATTGTGAATCAAGTTCTTGATGAAAT
TGGAATTGAAATCTCTGGAAAGATGGCCAAAGCTCCATCAGCTGCCCGAAGCTTACCATC
TGCATCTACTTCAAAGGCTACAATCTCCGATGAAGAGATTGAACGGCAACTCAAAGCTTT
AGGAGTAGATTAATCAAAAAAGCCATTATATTTTGCTTATTATAATTTTTTAGTATAAAC
CAGGCACAGTGCAGATTCCTTTTACAAAACACATTTATTTTGCAAAAATGAAGACCATGA
GTAAACAGTTGTTTCCTAACCCATGGCTATTTTGAATCTTTTGCCAAAGAATGACAATGA
TATACAAATGGGAACAGTTTGGATTTTAATTAGAACTGTTTAGGGTGATGATATGTAAAA
AGTTGACTTCTTTTCTGCATGGCATATAGAATTTATATACATTACTTAGTGTAGTTTATG
TTCTTAAGTCTTTTTACACTGAATACAAATCTTGTTAAAGCCACCAGGCATGGACTTAAA
GAGACTTGTAAAAATATTAAAATATGTCATTAATTCCGTATCTGTTACTTGTTCTTTGTA
AGTGGTATGTGTTATGACCATAGGCCAAATTATTTTTAAGTCATCTAAAAGAAAAGTGCT
ATTTAAACATCTGTCTTAAAAACTGTTAAGAGCTTTTCTTCTCTCTTTTTTTTCCTTTGG
GAGAACATTGTAGTTGGTAAGTTTATTACCTTTCAAAATGTACTTGGCACCTGCCTTAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8BJF9_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8BJF9_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               741-1082, - strand, RNAz p=0.997697

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               741-1082, - strand, RNAz p=0.997697

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-248, gnl|bosTau2|chr1 (19275658-19275407)
               

               
               1-248, gnl|canFam2|chr31 (3817055-3816795)
               

               
               1-248, gnl|dasNov1|scaffold_20058 (15287-15551)
               

               
               1-248, gnl|echTel1|scaffold_282288 (49848-49587)
               

               
               1-248, gnl|hg17|chr3 (87359072-87359331)
               

               
               1-248, gnl|Hg17|chr3 (87359150-87359399)
               

               
               1-248, gnl|loxAfr1|scaffold_42257 (40606-40343)
               

               
               1-248, gnl|mm7|chr16 (65483179-65482929)
               

               
               1-248, gnl|Mm7|chr16 (65483096-65482854)
               

               
               1-248, gnl|monDom2|scaffold_25 (10370344-10370618)
               

               
               1-248, gnl|oryCun1|scaffold_215108 (107974-108238)
               

               
               1-248, gnl|panTro1|chr2 (89703402-89703663)
               

               
               1-248, gnl|rheMac2|chr2 (11470581-11470842)
               

               
               1-248, gnl|rn3|chr11 (3026211-3025962)
               


               
               337-532, gnl|bosTau2|chr1 (19253602-19253407)
               

               
               337-532, gnl|Hg17|chr3 (87377553-87377748)
               

               
               337-532, gnl|Mm7|chr16 (65467426-65467231)
               


               
               741-1440, gnl|bosTau2|chr1 (19411481-19412188)
               

               
               741-1440, gnl|Hg17|chr3 (87385550-87386268)
               

               
               741-1440, gnl|Mm7|chr16 (65460523-65459812)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-248, gnl|bosTau2|chr1 (19275658-19275407)
               

               
               1-248, gnl|canFam2|chr31 (3817055-3816795)
               

               
               1-248, gnl|dasNov1|scaffold_20058 (15287-15551)
               

               
               1-248, gnl|echTel1|scaffold_282288 (49848-49587)
               

               
               1-248, gnl|hg17|chr3 (87359072-87359331)
               

               
               1-248, gnl|Hg17|chr3 (87359150-87359399)
               

               
               1-248, gnl|loxAfr1|scaffold_42257 (40606-40343)
               

               
               1-248, gnl|mm7|chr16 (65483179-65482929)
               

               
               1-248, gnl|Mm7|chr16 (65483096-65482854)
               

               
               1-248, gnl|monDom2|scaffold_25 (10370344-10370618)
               

               
               1-248, gnl|oryCun1|scaffold_215108 (107974-108238)
               

               
               1-248, gnl|panTro1|chr2 (89703402-89703663)
               

               
               1-248, gnl|rheMac2|chr2 (11470581-11470842)
               

               
               1-248, gnl|rn3|chr11 (3026211-3025962)
               


               
               337-532, gnl|bosTau2|chr1 (19253602-19253407)
               

               
               337-532, gnl|Hg17|chr3 (87377553-87377748)
               

               
               337-532, gnl|Mm7|chr16 (65467426-65467231)
               


               
               741-1440, gnl|bosTau2|chr1 (19411481-19412188)
               

               
               741-1440, gnl|Hg17|chr3 (87385550-87386268)
               

               
               741-1440, gnl|Mm7|chr16 (65460523-65459812)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               kid (0.259471)
               

               
               nep (0.183925)
               

               
               rec (0.17307)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.259471)
               

               
               nep (0.183925)
               

               
               rec (0.17307)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)

	1-248, gnl\|bosTau2\|chr1 (19275658-19275407)
	1-248, gnl\|canFam2\|chr31 (3817055-3816795)
	1-248, gnl\|dasNov1\|scaffold_20058 (15287-15551)
	1-248, gnl\|echTel1\|scaffold_282288 (49848-49587)
	1-248, gnl\|hg17\|chr3 (87359072-87359331)
	1-248, gnl\|Hg17\|chr3 (87359150-87359399)
	1-248, gnl\|loxAfr1\|scaffold_42257 (40606-40343)
	1-248, gnl\|mm7\|chr16 (65483179-65482929)
	1-248, gnl\|Mm7\|chr16 (65483096-65482854)
	1-248, gnl\|monDom2\|scaffold_25 (10370344-10370618)
	1-248, gnl\|oryCun1\|scaffold_215108 (107974-108238)
	1-248, gnl\|panTro1\|chr2 (89703402-89703663)
	1-248, gnl\|rheMac2\|chr2 (11470581-11470842)
	1-248, gnl\|rn3\|chr11 (3026211-3025962)

	337-532, gnl\|bosTau2\|chr1 (19253602-19253407)
	337-532, gnl\|Hg17\|chr3 (87377553-87377748)
	337-532, gnl\|Mm7\|chr16 (65467426-65467231)

	741-1440, gnl\|bosTau2\|chr1 (19411481-19412188)
	741-1440, gnl\|Hg17\|chr3 (87385550-87386268)
	741-1440, gnl\|Mm7\|chr16 (65460523-65459812)

	kid (0.259471)
	nep (0.183925)
	rec (0.17307)
	ret (0.128733)
	tra (0.123092)
	cbl (0.114797)