Non-Coding RNA Search

Ss1.1-Pig4-TMW8019H14.3

Sequence:


               
               CAACTGCATGTGTTCTGGAACGGACCGGAGGCCTGGACTTCTGGGTCCCCACGGGAGAGG
GGGAGGAGAGGAGCTGAAGGCTGCTGTATCTGCGTCCCAATCCCAAGGAGGACTGGACTG
GTTGGGACTTTGAACGGTGACACTCTCAAGCTGGAGGAAGGAAGCAGCTGGGGGCCCCTG
GAAGACGAGGCATGTGGGGCTACCTCTCCCTGCTTCCTGTCCTCCTGGCCATCTGGGCTA
TTGGTGGCCTGTGGACCGTCTTTTCGGTGGCTGTGGCCAACAAGTCCGTGAACCTCACGC
AAGGATTCCCCTACATCAGTATATGTGGAAATCAGCCCCCTCAGAGCTGCATCTTCAGCC
AGGTGCTCAACTTAGGAGCTGCTTTGGCCACCTGGATCTGCATTCTCCGTTACCACCAGC
TTCGGGACTGGGGGGTCGGAAAGTGGCCTAACCGGCTGATCCTGTGGACGGGGCTCCTCT
CTGCGCTGGGCACCTCCATAGTGGGCAATTTCCAGCAAAAGAACCTGCGGGCCATGCACC
TGACAGGGGCCTTTTTTGCCTTCTTTGTGGGCACCCTCTACTTCTGGCTGCAGCTCCTCT
TCCTCTGGCGGATGAAGAGCGTGCCCCGGCCTGGGGCTCCCTGGATCAGGCCGCTCCGCC
TGGGCCTCTGCAGCATCTGCACCATCCTCACTGTGGCCATGGTCGTGCTGCACATCTGGC
GGATGCGCTCCGTGGACGGGTGTACCCTGCGTCTGCGACCACGCTCGGGCCCCCTCAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACTGCATGTGTTCTGGAACGGACCGGAGGCCTGGACTTCTGGGTCCCCACGGGAGAGG
GGGAGGAGAGGAGCTGAAGGCTGCTGTATCTGCGTCCCAATCCCAAGGAGGACTGGACTG
GTTGGGACTTTGAACGGTGACACTCTCAAGCTGGAGGAAGGAAGCAGCTGGGGGCCCCTG
GAAGACGAGGCATGTGGGGCTACCTCTCCCTGCTTCCTGTCCTCCTGGCCATCTGGGCTA
TTGGTGGCCTGTGGACCGTCTTTTCGGTGGCTGTGGCCAACAAGTCCGTGAACCTCACGC
AAGGATTCCCCTACATCAGTATATGTGGAAATCAGCCCCCTCAGAGCTGCATCTTCAGCC
AGGTGCTCAACTTAGGAGCTGCTTTGGCCACCTGGATCTGCATTCTCCGTTACCACCAGC
TTCGGGACTGGGGGGTCGGAAAGTGGCCTAACCGGCTGATCCTGTGGACGGGGCTCCTCT
CTGCGCTGGGCACCTCCATAGTGGGCAATTTCCAGCAAAAGAACCTGCGGGCCATGCACC
TGACAGGGGCCTTTTTTGCCTTCTTTGTGGGCACCCTCTACTTCTGGCTGCAGCTCCTCT
TCCTCTGGCGGATGAAGAGCGTGCCCCGGCCTGGGGCTCCCTGGATCAGGCCGCTCCGCC
TGGGCCTCTGCAGCATCTGCACCATCCTCACTGTGGCCATGGTCGTGCTGCACATCTGGC
GGATGCGCTCCGTGGACGGGTGTACCCTGCGTCTGCGACCACGCTCGGGCCCCCTCAGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55649939|ref|XP_512909.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55649939|ref|XP_512909.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               572-689, - strand, RNAz p=0.994776

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               572-689, - strand, RNAz p=0.994776

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               512-751, gnl|bosTau2|chr18 (54939361-54939601)
               

               
               512-751, gnl|canFam2|chr1 (105440123-105439804)
               

               
               512-751, gnl|echTel1|scaffold_288328 (44256-44596)
               

               
               512-751, gnl|hg17|chr19 (60519835-60520179)
               

               
               512-751, gnl|Hg17|chr19 (60520150-60519899)
               

               
               512-751, gnl|mm7|chr7 (4294281-4294620)
               

               
               512-751, gnl|Mm7|chr7 (4294592-4294344)
               

               
               512-751, gnl|monDom2|scaffold_1493 (657-970)
               

               
               512-751, gnl|panTro1|chr20 (57943064-57943408)
               

               
               512-751, gnl|rheMac2|chr19 (61343233-61343577)
               

               
               512-751, gnl|rn3|chr1 (67924807-67924467)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               512-751, gnl|bosTau2|chr18 (54939361-54939601)
               

               
               512-751, gnl|canFam2|chr1 (105440123-105439804)
               

               
               512-751, gnl|echTel1|scaffold_288328 (44256-44596)
               

               
               512-751, gnl|hg17|chr19 (60519835-60520179)
               

               
               512-751, gnl|Hg17|chr19 (60520150-60519899)
               

               
               512-751, gnl|mm7|chr7 (4294281-4294620)
               

               
               512-751, gnl|Mm7|chr7 (4294592-4294344)
               

               
               512-751, gnl|monDom2|scaffold_1493 (657-970)
               

               
               512-751, gnl|panTro1|chr20 (57943064-57943408)
               

               
               512-751, gnl|rheMac2|chr19 (61343233-61343577)
               

               
               512-751, gnl|rn3|chr1 (67924807-67924467)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	512-751, gnl\|bosTau2\|chr18 (54939361-54939601)
	512-751, gnl\|canFam2\|chr1 (105440123-105439804)
	512-751, gnl\|echTel1\|scaffold_288328 (44256-44596)
	512-751, gnl\|hg17\|chr19 (60519835-60520179)
	512-751, gnl\|Hg17\|chr19 (60520150-60519899)
	512-751, gnl\|mm7\|chr7 (4294281-4294620)
	512-751, gnl\|Mm7\|chr7 (4294592-4294344)
	512-751, gnl\|monDom2\|scaffold_1493 (657-970)
	512-751, gnl\|panTro1\|chr20 (57943064-57943408)
	512-751, gnl\|rheMac2\|chr19 (61343233-61343577)
	512-751, gnl\|rn3\|chr1 (67924807-67924467)