Ss1.1-Pig4-TMW8019H14.5
|
GGGTGCGAGTGGCGCAGTCGGAGCCCGCTGCGGCCCCTGAGGAAGCGAGGAGGCGTCTGT
GTCGGCTGAGACGGGCGGACCGGGGAGGCAAGGCGGCGACTCCAGGCGCCGAGGGACTCA
GGACCTCGAGCGGCGGCGGCGGCAACAGCTCTCCCCCTCGGAAGCGGCGGGCGGAGGCGG
CGGCGGCGGGAGCGGTGGTGCCCCCCCCCGGGCACGGGGCCATGTACAACGGGATCGGGC
TGCCGACGCCCCGGGGCAGCGGCACCAACGGCTACGTCCAGCGCAACCTGTCCCTGGTGC
GGGGCCGCCGGGGTGAGCGGCCTGACTACAAGGGAGAGGAGGAACTGCGGCGCCTGGAGG
CTGCCCTGGTGAAGCGGCCTAATCCTGACATCCTGGACCACGAGCGCAAGCGGCGCGTGG
AGCTGCGATGCCTCGAGCTGGAGGAGATGATGGAAGAGCAGGGGTACGAGGAACAGCAAA
TTCAGGAGAAAGTGGCGACCTTTCGACTCATGTTGCTGGAGAAGGATGTGAACCCTGGGG
GCAAGGAGGAGACCCCAGGGCAGAGGCCAGCGGTAACTGAGACTCACCAGTTGGCAGAAC
TGAACGAGAAGAAGAACGAGCGACTCCGAGCTGCCTTTGGCATTAGTGATTCCTATGTGG
ATGGCAGCTCTTTTGATCCTCAGCGTCGTGCTCGAGAAGCTAAACAACCAGCTCCTGAGC
CTCCCAAACCTTACAGCCTTGTCCGAGAGTCTAGCAGTTCTCGTTCACCAACGCCAAAGC
AAAAGAAGAAGAAAAAGAAGAAAGATAGAGGACGCAGGTCGGAGAGCAGCTCTCCTCGAC
GAGAGAGGAAGAAGAGCTCTAAGAAGAAGAAGCACAGGTCAGAATCTGAATCCAAGAAAA
GGAAGCATAGGTCTCCTACTCCAAAGAGCAAACGTAAATCTAAGGACAAGAAGCGGAAGC
GGTCTCGAAGTACGACTCCAGCTCCCAAGAGCCGACGGGCCCATCGTTCAACTTCTGCTG
ACTCTGCTTCCTCTTCTGATACTTCTCGAAGTCGGTCTCGAAGTGCTGCAGCAAAAACCC
ATACAACTACCTTGACTGGCAGAAGCCCTTCCCCTACTTCTGGGCATCGAGGGGAGGGAG
ATGCGCCTTCCAGGGAACCAGGTACTGCCAACACCGGGCAGCCTAGTAGCTCGGAGCCTT
CTGCAAAACAGCCTGGCAGTCCTTATGAGGACAAGGGTAAAGACAAGAAGGAGAAATCTG
CAGTTCGATCTAGCCCCTCTCCGGAAAGGAGCAGCACAGGGCCTGAACCACCTGCTCCTA
CTCCGCTCCTTGCTGAGCAACATGGCGGCTCCCCACAACCCCTTGCAACAACCCCCTTAA
GTCAGGAGCCAG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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GGGTGCGAGTGGCGCAGTCGGAGCCCGCTGCGGCCCCTGAGGAAGCGAGGAGGCGTCTGT
GTCGGCTGAGACGGGCGGACCGGGGAGGCAAGGCGGCGACTCCAGGCGCCGAGGGACTCA
GGACCTCGAGCGGCGGCGGCGGCAACAGCTCTCCCCCTCGGAAGCGGCGGGCGGAGGCGG
CGGCGGCGGGAGCGGTGGTGCCCCCCCCCGGGCACGGGGCCATGTACAACGGGATCGGGC
TGCCGACGCCCCGGGGCAGCGGCACCAACGGCTACGTCCAGCGCAACCTGTCCCTGGTGC
GGGGCCGCCGGGGTGAGCGGCCTGACTACAAGGGAGAGGAGGAACTGCGGCGCCTGGAGG
CTGCCCTGGTGAAGCGGCCTAATCCTGACATCCTGGACCACGAGCGCAAGCGGCGCGTGG
AGCTGCGATGCCTCGAGCTGGAGGAGATGATGGAAGAGCAGGGGTACGAGGAACAGCAAA
TTCAGGAGAAAGTGGCGACCTTTCGACTCATGTTGCTGGAGAAGGATGTGAACCCTGGGG
GCAAGGAGGAGACCCCAGGGCAGAGGCCAGCGGTAACTGAGACTCACCAGTTGGCAGAAC
TGAACGAGAAGAAGAACGAGCGACTCCGAGCTGCCTTTGGCATTAGTGATTCCTATGTGG
ATGGCAGCTCTTTTGATCCTCAGCGTCGTGCTCGAGAAGCTAAACAACCAGCTCCTGAGC
CTCCCAAACCTTACAGCCTTGTCCGAGAGTCTAGCAGTTCTCGTTCACCAACGCCAAAGC
AAAAGAAGAAGAAAAAGAAGAAAGATAGAGGACGCAGGTCGGAGAGCAGCTCTCCTCGAC
GAGAGAGGAAGAAGAGCTCTAAGAAGAAGAAGCACAGGTCAGAATCTGAATCCAAGAAAA
GGAAGCATAGGTCTCCTACTCCAAAGAGCAAACGTAAATCTAAGGACAAGAAGCGGAAGC
GGTCTCGAAGTACGACTCCAGCTCCCAAGAGCCGACGGGCCCATCGTTCAACTTCTGCTG
ACTCTGCTTCCTCTTCTGATACTTCTCGAAGTCGGTCTCGAAGTGCTGCAGCAAAAACCC
ATACAACTACCTTGACTGGCAGAAGCCCTTCCCCTACTTCTGGGCATCGAGGGGAGGGAG
ATGCGCCTTCCAGGGAACCAGGTACTGCCAACACCGGGCAGCCTAGTAGCTCGGAGCCTT
CTGCAAAACAGCCTGGCAGTCCTTATGAGGACAAGGGTAAAGACAAGAAGGAGAAATCTG
CAGTTCGATCTAGCCCCTCTCCGGAAAGGAGCAGCACAGGGCCTGAACCACCTGCTCCTA
CTCCGCTCCTTGCTGAGCAACATGGCGGCTCCCCACAACCCCTTGCAACAACCCCCTTAA
GTCAGGAGCCAG
|
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gi|33871534|gb|AAH07752.1| |
Protein identifier
|
gi|33871534|gb|AAH07752.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
189-465, gnl|bosTau2|chr25 (3730783-3730509) |
|
189-465, gnl|Hg17|chr16 (2746335-2746610) |
|
189-465, gnl|Mm7|chr17 (21986806-21987079) |
| |
|
572-736, gnl|bosTau2|chr25 (3729308-3729144) |
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572-736, gnl|canFam2|chr6 (41338409-41338632) |
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572-736, gnl|dasNov1|scaffold_18931 (19119-18893) |
|
572-736, gnl|echTel1|scaffold_273163 (13378-13153) |
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572-736, gnl|hg17|chr16 (2747744-2747966) |
|
572-736, gnl|Hg17|chr16 (2747783-2747947) |
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572-736, gnl|mm7|chr17 (21988215-21988409) |
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572-736, gnl|Mm7|chr17 (21988229-21988393) |
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572-736, gnl|monDom2|scaffold_49 (6800271-6800493) |
|
572-736, gnl|panTro1|chr18 (2618561-2618783) |
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572-736, gnl|rheMac2|chr20 (2966141-2965919) |
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572-736, gnl|rn3|chr10 (13068239-13068433) |
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572-736, gnl|xenTro1|scaffold_1542 (97795-98000) |
| |
|
1022-1234, gnl|bosTau2|chr25 (3727703-3727493) |
|
1022-1234, gnl|Hg17|chr16 (2750273-2750482) |
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1022-1234, gnl|Mm7|chr17 (21992275-21992482) |
| |
|
1252-1392, gnl|bosTau2|chr25 (3726161-3726021) |
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1252-1392, gnl|Hg17|chr16 (2751561-2751701) |
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1252-1392, gnl|Mm7|chr17 (21994995-21995135) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
189-465, gnl|bosTau2|chr25 (3730783-3730509) |
|
189-465, gnl|Hg17|chr16 (2746335-2746610) |
|
189-465, gnl|Mm7|chr17 (21986806-21987079) |
| |
|
572-736, gnl|bosTau2|chr25 (3729308-3729144) |
|
572-736, gnl|canFam2|chr6 (41338409-41338632) |
|
572-736, gnl|dasNov1|scaffold_18931 (19119-18893) |
|
572-736, gnl|echTel1|scaffold_273163 (13378-13153) |
|
572-736, gnl|hg17|chr16 (2747744-2747966) |
|
572-736, gnl|Hg17|chr16 (2747783-2747947) |
|
572-736, gnl|mm7|chr17 (21988215-21988409) |
|
572-736, gnl|Mm7|chr17 (21988229-21988393) |
|
572-736, gnl|monDom2|scaffold_49 (6800271-6800493) |
|
572-736, gnl|panTro1|chr18 (2618561-2618783) |
|
572-736, gnl|rheMac2|chr20 (2966141-2965919) |
|
572-736, gnl|rn3|chr10 (13068239-13068433) |
|
572-736, gnl|xenTro1|scaffold_1542 (97795-98000) |
| |
|
1022-1234, gnl|bosTau2|chr25 (3727703-3727493) |
|
1022-1234, gnl|Hg17|chr16 (2750273-2750482) |
|
1022-1234, gnl|Mm7|chr17 (21992275-21992482) |
| |
|
1252-1392, gnl|bosTau2|chr25 (3726161-3726021) |
|
1252-1392, gnl|Hg17|chr16 (2751561-2751701) |
|
1252-1392, gnl|Mm7|chr17 (21994995-21995135) |
|
sme (0.305437) |
|
cki (0.165235) |
|
pla (0.133672) |
|
eep (0.122564) |
|
sme (0.305437) |
|
cki (0.165235) |
|
pla (0.133672) |
|
eep (0.122564) |
