Ss1.1-Pig4-TMW8019I17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGTACAGAGGCACCACTAATAATCAGACCTGATTCTGGAAATCCTCTTGACACTGTATT AAAGGTTTTGGATATTTTAGGAAAGAAGTTCCCTGTTACTGAGAACTCAAAGGGCTACAA GTTGCTGCCACCTTATCTTAGAGTTATTCAAGGAGATGGAGTAGATATTAATACCTTACA AGAGATTGTAGAAGGCATGAAGCAAAAAAAATGGAGTATTGAAAATATTGCCTTTGGTTC TGGTGGAGCTTTGCTACAGAAGTTAACGAGAGATCTCTTGAACTGTTCCTTTAAATGTAG TTATGTCGTAACCAATGGTCTTGGGATTAATGTCTTCAAGGACCCAGTTGCTGATCCCAA CAAAAGGTCCAAAAAGGGCCGATTATCTTTACATAGGACACCAGGAGGGAATTTTGTTAC ACTTGAGGAAGGAAAAGGAGACCTTGAGGAATACGGTCATGATCTTCTCCATACTGTCTT CAAGAATGGAAAGGTGACAAAAAGCTATTCATTTGATGAAGTAAGAAAAAACGCACAGCT GAATATTGAACTGGAAGCAGCACCTCATTAGGCTTTGTTTTATGACTGGATGTGTGTGTG TGTGTGTACCTGCGTGTGCTTGGGTGTGTGTTTACGTGCATGCATGCACGTATACACCTG TGTGTGTGAGTATGTAATGCATAATGTTTATTGTACAGATGTGTGGGGTTTCTTTGTGTT TTATGACACATTACAGCCAAATTATTTGTTGGTTTATGGACATACTACCCTTTCATTTTT TTGTTTGTTTTTTGTTTGTTTGTTTGGGGCCAGTGTTTAGGTGATCTCAAATTAGGAAAT GCACTTAACCATGTAAAAGGTAATTGCTAAAGTAAGCTTTTTAGGGCCCTTTGCCAATAG ATAGTAATTCAATCTGGTATTGATCTTTTCACAAACAGAACCAAGAAACTTTTATATATA TAACTCAAGATCACATAAAACAGATTTGCATAAAATTATCATGATTGCTTTATGTTTATA TTTAACTTGTATTTTTGTACAAACAAGATTGTGTAAGATATATTTAAAGTTTCAGTGATT TAACAGTCTTTCCAACTTTTCATGATTTTTATGAGCACAGACTTTCAAGAAAATACTTGA AAATAATTACATTGCCTTTTGTCCATTAATCAGCAAATAAAACATGGCCTTAACAAAGTT GTTTGTGTTATTGTACAATTTGAAATTTATGTCAGGACATACCCAATAGAAATTACGAAA CCTCACTGCCCCTTGTAGAATATGTATGAATCATTCTACCTTAAAGAAAGTAACGGTTCT TACTGGAATGTCTAGGCACTGTACAGTGATTTTACATGTTGGTCATTGTATTGTACCAGT GAAATGCCAAATTTGAAAGGCCTGTACTATGATTTTATATGTCAGATATTGCCTGTGGCT CTAATATGCACCTCAAGATTTTAAGGAGATTTTTAGAGAGAATTTCTGCTTACACTATAG AATATATACATAAAATGTAAAATATTGACAGAAATGGAAGTAGTGTATTTTAAAGTAACT ACACTTCTGAATTTATTTTTCCTATTCTATAGTTGATATGACTTAAATGAATTCCTGGAA TGGGTAGTGAGTGTACTTATTTTAAATGTTTTGATTCTGTTATATTTTTCATTAAGTTTT TCAAAAATTAAAGTGGATATTAAATTTTATGGATAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGTACAGAGGCACCACTAATAATCAGACCTGATTCTGGAAATCCTCTTGACACTGTATT AAAGGTTTTGGATATTTTAGGAAAGAAGTTCCCTGTTACTGAGAACTCAAAGGGCTACAA GTTGCTGCCACCTTATCTTAGAGTTATTCAAGGAGATGGAGTAGATATTAATACCTTACA AGAGATTGTAGAAGGCATGAAGCAAAAAAAATGGAGTATTGAAAATATTGCCTTTGGTTC TGGTGGAGCTTTGCTACAGAAGTTAACGAGAGATCTCTTGAACTGTTCCTTTAAATGTAG TTATGTCGTAACCAATGGTCTTGGGATTAATGTCTTCAAGGACCCAGTTGCTGATCCCAA CAAAAGGTCCAAAAAGGGCCGATTATCTTTACATAGGACACCAGGAGGGAATTTTGTTAC ACTTGAGGAAGGAAAAGGAGACCTTGAGGAATACGGTCATGATCTTCTCCATACTGTCTT CAAGAATGGAAAGGTGACAAAAAGCTATTCATTTGATGAAGTAAGAAAAAACGCACAGCT GAATATTGAACTGGAAGCAGCACCTCATTAGGCTTTGTTTTATGACTGGATGTGTGTGTG TGTGTGTACCTGCGTGTGCTTGGGTGTGTGTTTACGTGCATGCATGCACGTATACACCTG TGTGTGTGAGTATGTAATGCATAATGTTTATTGTACAGATGTGTGGGGTTTCTTTGTGTT TTATGACACATTACAGCCAAATTATTTGTTGGTTTATGGACATACTACCCTTTCATTTTT TTGTTTGTTTTTTGTTTGTTTGTTTGGGGCCAGTGTTTAGGTGATCTCAAATTAGGAAAT GCACTTAACCATGTAAAAGGTAATTGCTAAAGTAAGCTTTTTAGGGCCCTTTGCCAATAG ATAGTAATTCAATCTGGTATTGATCTTTTCACAAACAGAACCAAGAAACTTTTATATATA TAACTCAAGATCACATAAAACAGATTTGCATAAAATTATCATGATTGCTTTATGTTTATA TTTAACTTGTATTTTTGTACAAACAAGATTGTGTAAGATATATTTAAAGTTTCAGTGATT TAACAGTCTTTCCAACTTTTCATGATTTTTATGAGCACAGACTTTCAAGAAAATACTTGA AAATAATTACATTGCCTTTTGTCCATTAATCAGCAAATAAAACATGGCCTTAACAAAGTT GTTTGTGTTATTGTACAATTTGAAATTTATGTCAGGACATACCCAATAGAAATTACGAAA CCTCACTGCCCCTTGTAGAATATGTATGAATCATTCTACCTTAAAGAAAGTAACGGTTCT TACTGGAATGTCTAGGCACTGTACAGTGATTTTACATGTTGGTCATTGTATTGTACCAGT GAAATGCCAAATTTGAAAGGCCTGTACTATGATTTTATATGTCAGATATTGCCTGTGGCT CTAATATGCACCTCAAGATTTTAAGGAGATTTTTAGAGAGAATTTCTGCTTACACTATAG AATATATACATAAAATGTAAAATATTGACAGAAATGGAAGTAGTGTATTTTAAAGTAACT ACACTTCTGAATTTATTTTTCCTATTCTATAGTTGATATGACTTAAATGAATTCCTGGAA TGGGTAGTGAGTGTACTTATTTTAAATGTTTTGATTCTGTTATATTTTTCATTAAGTTTT TCAAAAATTAAAGTGGATATTAAATTTTATGGATAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 540-739, + strand, RNAz p=0.999244 | |
| 1327-1561, - strand, RNAz p=0.8051 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 540-739, + strand, RNAz p=0.999244 | |
| 1327-1561, - strand, RNAz p=0.8051 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 183-339, gnl|bosTau2|chr4 (23488660-23488815) | |
| 183-339, gnl|canFam2|chr18 (17193170-17193056) | |
| 183-339, gnl|canFam2|chr18 (17193186-17193005) | |
| 183-339, gnl|danRer3|chr5 (56436699-56436591) | |
| 183-339, gnl|danRer3|chrNA (121209853-121209681) | |
| 183-339, gnl|dasNov1|scaffold_124133 (6981-6867) | |
| 183-339, gnl|dasNov1|scaffold_27184 (2078-2274) | |
| 183-339, gnl|echTel1|scaffold_290018 (81568-81454) | |
| 183-339, gnl|echTel1|scaffold_290018 (81587-81400) | |
| 183-339, gnl|fr1|chrUn (135206979-135206865) | |
| 183-339, gnl|fr1|chrUn (135206994-135206813) | |
| 183-339, gnl|galGal2|chr1 (9460739-9460625) | |
| 183-339, gnl|galGal2|chr1 (9460751-9460581) | |
| 183-339, gnl|hg17|chr10 (36851997-36852111) | |
| 183-339, gnl|hg17|chr7 (105488747-105488929) | |
| 183-339, gnl|Hg17|chr7 (105488903-105488752) | |
| 183-339, gnl|mm7|chr12 (30686421-30686308) | |
| 183-339, gnl|mm7|chr12 (30686441-30686264) | |
| 183-339, gnl|Mm7|chr12 (30686279-30686434) | |
| 183-339, gnl|monDom2|scaffold_30 (32658899-32659012) | |
| 183-339, gnl|monDom2|scaffold_30 (32658879-32659056) | |
| 183-339, gnl|oryCun1|scaffold_105747 (472-586) | |
| 183-339, gnl|oryCun1|scaffold_187919 (5093-4910) | |
| 183-339, gnl|panTro1|chr6 (107379916-107380098) | |
| 183-339, gnl|panTro1|chr8 (37380952-37381066) | |
| 183-339, gnl|rheMac2|chr3 (143666702-143666815) | |
| 183-339, gnl|rheMac2|chr3 (143666686-143666868) | |
| 183-339, gnl|rn3|chr6 (51165510-51165397) | |
| 183-339, gnl|rn3|chr6 (51165522-51165353) | |
| 183-339, gnl|tetNig1|chr19 (3855252-3855366) | |
| 183-339, gnl|tetNig1|chr19 (3855250-3855394) | |
| 183-339, gnl|xenTro1|scaffold_452 (44307-44421) | |
| 183-339, gnl|xenTro1|scaffold_452 (44279-44469) | |
| 461-1716, gnl|bosTau2|chr4 (23496133-23497342) | |
| 461-1716, gnl|Hg17|chr7 (105485590-105484433) | |
| 461-1716, gnl|Mm7|chr12 (30689998-30691190) | |
| 1372-1574, gnl|bosTau2|chr16 (35764965-35764757) | |
| 1372-1574, gnl|Hg17|chr10 (36851010-36850804) | |
| 1372-1574, gnl|Mm7|chr12 (30690848-30691049) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 183-339, gnl|bosTau2|chr4 (23488660-23488815) | |
| 183-339, gnl|canFam2|chr18 (17193170-17193056) | |
| 183-339, gnl|canFam2|chr18 (17193186-17193005) | |
| 183-339, gnl|danRer3|chr5 (56436699-56436591) | |
| 183-339, gnl|danRer3|chrNA (121209853-121209681) | |
| 183-339, gnl|dasNov1|scaffold_124133 (6981-6867) | |
| 183-339, gnl|dasNov1|scaffold_27184 (2078-2274) | |
| 183-339, gnl|echTel1|scaffold_290018 (81568-81454) | |
| 183-339, gnl|echTel1|scaffold_290018 (81587-81400) | |
| 183-339, gnl|fr1|chrUn (135206979-135206865) | |
| 183-339, gnl|fr1|chrUn (135206994-135206813) | |
| 183-339, gnl|galGal2|chr1 (9460739-9460625) | |
| 183-339, gnl|galGal2|chr1 (9460751-9460581) | |
| 183-339, gnl|hg17|chr10 (36851997-36852111) | |
| 183-339, gnl|hg17|chr7 (105488747-105488929) | |
| 183-339, gnl|Hg17|chr7 (105488903-105488752) | |
| 183-339, gnl|mm7|chr12 (30686421-30686308) | |
| 183-339, gnl|mm7|chr12 (30686441-30686264) | |
| 183-339, gnl|Mm7|chr12 (30686279-30686434) | |
| 183-339, gnl|monDom2|scaffold_30 (32658899-32659012) | |
| 183-339, gnl|monDom2|scaffold_30 (32658879-32659056) | |
| 183-339, gnl|oryCun1|scaffold_105747 (472-586) | |
| 183-339, gnl|oryCun1|scaffold_187919 (5093-4910) | |
| 183-339, gnl|panTro1|chr6 (107379916-107380098) | |
| 183-339, gnl|panTro1|chr8 (37380952-37381066) | |
| 183-339, gnl|rheMac2|chr3 (143666702-143666815) | |
| 183-339, gnl|rheMac2|chr3 (143666686-143666868) | |
| 183-339, gnl|rn3|chr6 (51165510-51165397) | |
| 183-339, gnl|rn3|chr6 (51165522-51165353) | |
| 183-339, gnl|tetNig1|chr19 (3855252-3855366) | |
| 183-339, gnl|tetNig1|chr19 (3855250-3855394) | |
| 183-339, gnl|xenTro1|scaffold_452 (44307-44421) | |
| 183-339, gnl|xenTro1|scaffold_452 (44279-44469) | |
| 461-1716, gnl|bosTau2|chr4 (23496133-23497342) | |
| 461-1716, gnl|Hg17|chr7 (105485590-105484433) | |
| 461-1716, gnl|Mm7|chr12 (30689998-30691190) | |
| 1372-1574, gnl|bosTau2|chr16 (35764965-35764757) | |
| 1372-1574, gnl|Hg17|chr10 (36851010-36850804) | |
| 1372-1574, gnl|Mm7|chr12 (30690848-30691049) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| bfe (0.749288) | |
| vin (0.665115) | |
| tbr (0.616713) | |
| pro (0.512033) | |
| ldo (0.485013) | |
| mgp (0.461361) | |
| amn (0.417711) | |
| mga (0.32041) | |
| fat (0.294855) | |
| ste (0.270416) | |
| kid (0.259471) | |
| tra (0.246184) | |
| mgm (0.180343) | |
| ton (0.1755) | |
| fhi (0.169578) | |
| fco (0.157208) | |
| isp (0.150376) | |
| ski (0.146735) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| jca (0.11396) | |
| spc (0.113366) | |
| jej (0.0989218) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| bfe (0.749288) | |
| vin (0.665115) | |
| tbr (0.616713) | |
| pro (0.512033) | |
| ldo (0.485013) | |
| mgp (0.461361) | |
| amn (0.417711) | |
| mga (0.32041) | |
| fat (0.294855) | |
| ste (0.270416) | |
| kid (0.259471) | |
| tra (0.246184) | |
| mgm (0.180343) | |
| ton (0.1755) | |
| fhi (0.169578) | |
| fco (0.157208) | |
| isp (0.150376) | |
| ski (0.146735) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| jca (0.11396) | |
| spc (0.113366) | |
| jej (0.0989218) |