Non-Coding RNA Search

Ss1.1-Pig4-TMW8019J19.5

Sequence:


               
               CTCCAGTGCTGAATGAGATTCTCCTTTGGGGTTCTGGGGCGTGTCTGGGCAGGCGGCTGG
CTTGAAGACTACTGACGCTTGTCCCTGACTTGGTTCTTTACACTGATGGGTGGCTGGGCC
TAGCCACTTCCTTCCAGGTTACACAGTCTGCTAGGAGCTGGGGAGTCTTTAGGTTTCTAC
CGAAGAAAATTTTGGAACAAGAGACGGGGACAGAGCAATAGCACGCCGCTGATCCCTAGT
TCTCTGTGCTTGCTGTTCTTCAGCAGCACTAGGGCAAGCGACAAGGAATCAGTCATTGAA
TACTTGTCACAGGTCCTTAGGATCAGGACACGGGGACCACACAGGCAGGAGATATGTCAG
ACCATAAACACTTAGCTGTTCCAGTTACTTCTGGTCACTCCATCAGTTACCAGCAAGGGA
TTTAAGGAGGAAGGAAGATACATTGGGTGCATCGTTATGTGATGATTGAAGAGAACCTGC
AGCTGCTTGTTGGAAGATGACAACCACCTTTTTCATTCCAATGTGAATGAAAACATTTTC
AAGCCTCAAAAACTCATCGGTTTTCCAAATTTCTAAGAAGGCTTTGCTACAAGCTACCAT
GCCCAACGAGGCATTCAACTCAGAATATTACAAGCCATCTTTATTGCCAAAACCAGCAAG
TACAAAGAGTCCAGAGATGAGGCGGGACTTGTGGCAGTGCCTTGGCCTCCTGGAAGCACG
TCTGAGCCCTCCTGTTCCCAGGGATCTTGAGGAACAAGCCCTCCTGAGCTGCTACAGTTC
CTGCCTGACCTCACTCCTTCGCAGTTGTCATTTGTCCTTCTTGGCGTGGGTGCTGACCTC
ACTCACCCTTGGGGTCTGGGATCCAGCATCAGGGCCTCTATACCCCAGGGTCCTCCATGC
CACACACGGTCACTGCTCTCCTCAGGGACCAGGACAAGGTGCTGCCGCCTGCCCCGGTGG
TTTCCCATGGGATATGTACAGGCAGGTTTCATCATCCCCCCTGGGAAACGATGGTGCCCC
TCAGGCCCGGAGAGGGGTTTCCAGCTGGGGGCGTGTGGGCTGCTGCTGCTGTCTTTGGCC
GTTGTTCCTCTTCTGGATTCTGCATTCTCCCCTCCAGAGACTGATGCTGGAGCTTGAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCAGTGCTGAATGAGATTCTCCTTTGGGGTTCTGGGGCGTGTCTGGGCAGGCGGCTGG
CTTGAAGACTACTGACGCTTGTCCCTGACTTGGTTCTTTACACTGATGGGTGGCTGGGCC
TAGCCACTTCCTTCCAGGTTACACAGTCTGCTAGGAGCTGGGGAGTCTTTAGGTTTCTAC
CGAAGAAAATTTTGGAACAAGAGACGGGGACAGAGCAATAGCACGCCGCTGATCCCTAGT
TCTCTGTGCTTGCTGTTCTTCAGCAGCACTAGGGCAAGCGACAAGGAATCAGTCATTGAA
TACTTGTCACAGGTCCTTAGGATCAGGACACGGGGACCACACAGGCAGGAGATATGTCAG
ACCATAAACACTTAGCTGTTCCAGTTACTTCTGGTCACTCCATCAGTTACCAGCAAGGGA
TTTAAGGAGGAAGGAAGATACATTGGGTGCATCGTTATGTGATGATTGAAGAGAACCTGC
AGCTGCTTGTTGGAAGATGACAACCACCTTTTTCATTCCAATGTGAATGAAAACATTTTC
AAGCCTCAAAAACTCATCGGTTTTCCAAATTTCTAAGAAGGCTTTGCTACAAGCTACCAT
GCCCAACGAGGCATTCAACTCAGAATATTACAAGCCATCTTTATTGCCAAAACCAGCAAG
TACAAAGAGTCCAGAGATGAGGCGGGACTTGTGGCAGTGCCTTGGCCTCCTGGAAGCACG
TCTGAGCCCTCCTGTTCCCAGGGATCTTGAGGAACAAGCCCTCCTGAGCTGCTACAGTTC
CTGCCTGACCTCACTCCTTCGCAGTTGTCATTTGTCCTTCTTGGCGTGGGTGCTGACCTC
ACTCACCCTTGGGGTCTGGGATCCAGCATCAGGGCCTCTATACCCCAGGGTCCTCCATGC
CACACACGGTCACTGCTCTCCTCAGGGACCAGGACAAGGTGCTGCCGCCTGCCCCGGTGG
TTTCCCATGGGATATGTACAGGCAGGTTTCATCATCCCCCCTGGGAAACGATGGTGCCCC
TCAGGCCCGGAGAGGGGTTTCCAGCTGGGGGCGTGTGGGCTGCTGCTGCTGTCTTTGGCC
GTTGTTCCTCTTCTGGATTCTGCATTCTCCCCTCCAGAGACTGATGCTGGAGCTTGAATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               202-317, + strand, RNAz p=0.998171

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               202-317, + strand, RNAz p=0.998171

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               228-295, + strand, RNAmicro p=0.979688

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               228-295, + strand, RNAmicro p=0.979688

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AB002315, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AB002315, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1115, gnl|bosTau2|chr10 (56275598-56274500)
               

               
               2-1115, gnl|Hg17|chr14 (74199424-74198343)
               

               
               2-1115, gnl|Mm7|chr12 (82919849-82918851)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1115, gnl|bosTau2|chr10 (56275598-56274500)
               

               
               2-1115, gnl|Hg17|chr14 (74199424-74198343)
               

               
               2-1115, gnl|Mm7|chr12 (82919849-82918851)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nje (0.16592)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               ese (0.126502)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               ese (0.126502)

	2-1115, gnl\|bosTau2\|chr10 (56275598-56274500)
	2-1115, gnl\|Hg17\|chr14 (74199424-74198343)
	2-1115, gnl\|Mm7\|chr12 (82919849-82918851)