Non-Coding RNA Search

Ss1.1-Pig4-TMW8019K03.3

Sequence:


               
               GCTGCTGCAAGAGGACTTTCTGGCGCACCGGGGCCGACCCCACGTCTATTTACAGCGCAT
CCAGCTTAACAACCCCACAGAGCGCGTGGCCGCGCTGCAGGCTGTGGGGCCCACGGCGGG
CCCGGGTCCCAGGGCCTTCACCAGCACCCTGGAGAAGGTCGGAGACCATCAGTTCCTCCT
CTACTCGGGCCGGTCCCCGCTTTTTTCCACGGGTCTAGTGTACCTGGTGGTGGTGGCCGC
CAAGAAGCTAGTGAACCGTCTCCAAGTGGCTCCCAAGACGCAGCTGGACGAGACTGTGCT
GTGGGTGGTGCATGTCTCAGGCCTACTGGACGCCCATGGGCTCAGAAGCAAAGCCGCCAA
GGAGCTCAAGGTGCTCCAGGACTTGGCACGGAAGGAAATGCTGGAGCTTTTGGAGATGCC
CGCGGCTGAGCTGCTTCAGGACCACCAGCGGCTCTGGGCTCAGCTCTTCAGCCCAGGCGT
GGAGATGAAGAAGATCACCGATGCGCACACTCCGTCCGGCCTGACCGTGAACCTGACACT
CTACTACATGCTCTCCTGCTCCCCGGCCCCGCTGCTCAGCCCCGACTTGAGCCACCGGGA
GCGGGACCAGATGGAATCAACACTCAACTATGAAGACCACTGCTTCAGCGGCCACGCCAC
CATGCACGCTGAGAACCTCTGGCCAGGCCACCTGTCCTCCGTCCAGCAGATCCTGCAGCT
CTGGGACCTGTGGAGGCTGACCCTGCAGAAGCGCGGCTGCAAGGGGCTTGTGCGGGCGGG
CGCCCCAGGCATCCTGCAGGGCATGGTGCTCAGCTTTGGCGGCCTGCAGTTCACCGAGAA
CCACCTGCAGTTCCAGGCCGACCCCGACGTGCTGCACAACAGCTACGCCCTGCACGGCAT
CCGCTACAAGAACGACCACATCAACCTGGCCGTGCTGGCAGATGCCGAGGGCAAGCCGTA
CCTGCACGTGTCTGTGGCGTCGCGAGGCCAGCCCATCAAGATCTACGCCTGCGAAGCAGG
CTGCCTGGACGAGCCTGTGGAGCTGACCTCAGCGCCCCAGGGCCACACCTTCTCGGTCAT
GGTCACGCAGCCCATCACGCCGCTGCTGTACATCTCCACGGACCTCACGCACCTGCAGGA
CCTGCGGCACACGCTGCACCTCAAGGCCATCCTGGCCCACGACGAGCACATGGCCCAGCA
GGACCCCGGGCTGCCCTTCCTCTTCTGGTTCAGCGTGGCCTCCCTCATCACCCTCTTCCA
CCTCTTCCTCTTCAAGCTCATCTACAACGAGTACTGCGGGCCTGGCGCCAAGCCCCTCTT
CAGGAGCAAGGAGGACCCCAGCGTGTGAGGGACACTCAGTCCTGCTTTCAGGCGCCACTT
GCACAAGACGCCCGGCACTGTAAGTCGTGCTGCTGTGAACAAGGGATCCTTCGGAAGCAC
CCTGCCTTTTGTGCCTTGTTGGGGGACACCAGTGACGCAGAAGCACGTGTTCAGGAGTTT
GTGTTGGGGAGCAGGGGAGGGGAGGGGCCCGTGGCCGCTTTGTAAGCTTTCGACTCAATA
AAATGAACCTGTACGGAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGCTGCAAGAGGACTTTCTGGCGCACCGGGGCCGACCCCACGTCTATTTACAGCGCAT
CCAGCTTAACAACCCCACAGAGCGCGTGGCCGCGCTGCAGGCTGTGGGGCCCACGGCGGG
CCCGGGTCCCAGGGCCTTCACCAGCACCCTGGAGAAGGTCGGAGACCATCAGTTCCTCCT
CTACTCGGGCCGGTCCCCGCTTTTTTCCACGGGTCTAGTGTACCTGGTGGTGGTGGCCGC
CAAGAAGCTAGTGAACCGTCTCCAAGTGGCTCCCAAGACGCAGCTGGACGAGACTGTGCT
GTGGGTGGTGCATGTCTCAGGCCTACTGGACGCCCATGGGCTCAGAAGCAAAGCCGCCAA
GGAGCTCAAGGTGCTCCAGGACTTGGCACGGAAGGAAATGCTGGAGCTTTTGGAGATGCC
CGCGGCTGAGCTGCTTCAGGACCACCAGCGGCTCTGGGCTCAGCTCTTCAGCCCAGGCGT
GGAGATGAAGAAGATCACCGATGCGCACACTCCGTCCGGCCTGACCGTGAACCTGACACT
CTACTACATGCTCTCCTGCTCCCCGGCCCCGCTGCTCAGCCCCGACTTGAGCCACCGGGA
GCGGGACCAGATGGAATCAACACTCAACTATGAAGACCACTGCTTCAGCGGCCACGCCAC
CATGCACGCTGAGAACCTCTGGCCAGGCCACCTGTCCTCCGTCCAGCAGATCCTGCAGCT
CTGGGACCTGTGGAGGCTGACCCTGCAGAAGCGCGGCTGCAAGGGGCTTGTGCGGGCGGG
CGCCCCAGGCATCCTGCAGGGCATGGTGCTCAGCTTTGGCGGCCTGCAGTTCACCGAGAA
CCACCTGCAGTTCCAGGCCGACCCCGACGTGCTGCACAACAGCTACGCCCTGCACGGCAT
CCGCTACAAGAACGACCACATCAACCTGGCCGTGCTGGCAGATGCCGAGGGCAAGCCGTA
CCTGCACGTGTCTGTGGCGTCGCGAGGCCAGCCCATCAAGATCTACGCCTGCGAAGCAGG
CTGCCTGGACGAGCCTGTGGAGCTGACCTCAGCGCCCCAGGGCCACACCTTCTCGGTCAT
GGTCACGCAGCCCATCACGCCGCTGCTGTACATCTCCACGGACCTCACGCACCTGCAGGA
CCTGCGGCACACGCTGCACCTCAAGGCCATCCTGGCCCACGACGAGCACATGGCCCAGCA
GGACCCCGGGCTGCCCTTCCTCTTCTGGTTCAGCGTGGCCTCCCTCATCACCCTCTTCCA
CCTCTTCCTCTTCAAGCTCATCTACAACGAGTACTGCGGGCCTGGCGCCAAGCCCCTCTT
CAGGAGCAAGGAGGACCCCAGCGTGTGAGGGACACTCAGTCCTGCTTTCAGGCGCCACTT
GCACAAGACGCCCGGCACTGTAAGTCGTGCTGCTGTGAACAAGGGATCCTTCGGAAGCAC
CCTGCCTTTTGTGCCTTGTTGGGGGACACCAGTGACGCAGAAGCACGTGTTCAGGAGTTT
GTGTTGGGGAGCAGGGGAGGGGAGGGGCCCGTGGCCGCTTTGTAAGCTTTCGACTCAATA
AAATGAACCTGTACGGAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|21739408|emb|CAD38747.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21739408|emb|CAD38747.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1153-1359, - strand, RNAz p=0.704028

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1153-1359, - strand, RNAz p=0.704028

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               474-1359, gnl|bosTau2|chr16 (21397327-21398213)
               

               
               474-1359, gnl|Hg17|chr1 (11917815-11916929)
               

               
               474-1359, gnl|Mm7|chr4 (146934147-146935027)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               474-1359, gnl|bosTau2|chr16 (21397327-21398213)
               

               
               474-1359, gnl|Hg17|chr1 (11917815-11916929)
               

               
               474-1359, gnl|Mm7|chr4 (146934147-146935027)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               cli (0.305623)
               

               
               pty (0.285429)
               

               
               cst (0.280073)
               

               
               hlv (0.278513)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.305623)
               

               
               pty (0.285429)
               

               
               cst (0.280073)
               

               
               hlv (0.278513)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	474-1359, gnl\|bosTau2\|chr16 (21397327-21398213)
	474-1359, gnl\|Hg17\|chr1 (11917815-11916929)
	474-1359, gnl\|Mm7\|chr4 (146934147-146935027)

	cli (0.305623)
	pty (0.285429)
	cst (0.280073)
	hlv (0.278513)
	col (0.195008)
	fty (0.17584)
	nco (0.161734)
	cag (0.151194)
	csk (0.140746)
	pla (0.133672)
	med (0.116252)
	jca (0.11396)
	cty (0.10408)
	jej (0.0989218)