Non-Coding RNA Search

Ss1.1-Pig4-TMW8019K04.5

Sequence:


               
               CTGCTCACCGCCGAGCGACCTCGGCCTCGCACTGCAGCCTCGGGCCGAGAGCCCAGGGTA
CCTTGGGACTTCCACTCCGGGACCGCGCCCCTACGGCCCCTCCACCTTTGTTTGGGGAGG
GTCGCCGAGCGCACGGGAGGGAACCGCCTGGTCTTCGCGGATCGCTTTCGCCGGCCACCA
ACCCTGTTCCCTCTGCTGTGAGGCCTCTTCGCCCCCACCCCCGTCCCAGGGGTCGATTTG
TGTTTACCTCGGTGACTAGATTTGCAGGCACTTGACCACCAACTTTTTTTTGTCTCCTGG
ACTGACTTAAAATTCGCCCACCCGGCGCCCCTCGTCTTTTCTCAGGGCGGAAATGGCCAA
CTCCGGCCTGCAACTGCTGGGCTTTTCCATGGCTCTGCTGGGCTGGGTGGGCCTGGTGGC
CTGCACCGCCATCCCGCAGTGGCAGATGAGCTCGTACGCGGGGGACAACATCATCACGGC
CCAGGCCATGTACAAGGGGCTATGGATGGACTGCGTCACGCAGAGCACAGGCATGATGAG
CTGCAAAACGTACGACTCGGTGCTCGCCCTGTCCGCGGCCCTGCAAGCCACCCGAGCCCT
AATGGTGGTCTCCCTGGTGCTGGGTTTGATGGCCATGTTCGTGGGAACCATGGGCATGAA
GTGTACAAACTGTGGGGGAGACGACAAAGTGAAGAAAGCCCGTATAGCCATGACTGGAGG
CATCATTTTCATCGTGGCAGGTCTTTGTGCGTTGATAGCTTGCTCCTGGTATGGCCACCA
GATTGTCACAGACTTTTATAACCCGTTGGTCCCCACAAACGTGAAGTATGAGTTTGGCCC
TGCCATCTTCATTGGCTGGGCAGGGTCCTCTCTGGTCCTCCTGGGAGGTGCGCTGCTCTC
TTGCTCTTGTCCTGGGAGTGAGGGCCAATCTGGGTACCGTGCACCCCGCTCCTACCCTAA
GCCCAATTCTGCCAAGGAGTACGTGTGAGCTGGGCTGCCCTGCCCCAGCCTGGCAGCCTA
TAGGGCACCCCAGACATCTGAAAGGACCTGGGGCAGAGAGCTCAGCCCGTGGGCAGAGTG
CGGAGCAGAAGCCTGCGGTCACTCCAGCCTGGCACACTGTGTACAGTTCCTGGGGGGTTG
GGAGGGGGGACCAAAAGGGGAGAGTGTGTGCTTTTTGTACAGTAATAAAACTATGTTTTG
GAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCTCACCGCCGAGCGACCTCGGCCTCGCACTGCAGCCTCGGGCCGAGAGCCCAGGGTA
CCTTGGGACTTCCACTCCGGGACCGCGCCCCTACGGCCCCTCCACCTTTGTTTGGGGAGG
GTCGCCGAGCGCACGGGAGGGAACCGCCTGGTCTTCGCGGATCGCTTTCGCCGGCCACCA
ACCCTGTTCCCTCTGCTGTGAGGCCTCTTCGCCCCCACCCCCGTCCCAGGGGTCGATTTG
TGTTTACCTCGGTGACTAGATTTGCAGGCACTTGACCACCAACTTTTTTTTGTCTCCTGG
ACTGACTTAAAATTCGCCCACCCGGCGCCCCTCGTCTTTTCTCAGGGCGGAAATGGCCAA
CTCCGGCCTGCAACTGCTGGGCTTTTCCATGGCTCTGCTGGGCTGGGTGGGCCTGGTGGC
CTGCACCGCCATCCCGCAGTGGCAGATGAGCTCGTACGCGGGGGACAACATCATCACGGC
CCAGGCCATGTACAAGGGGCTATGGATGGACTGCGTCACGCAGAGCACAGGCATGATGAG
CTGCAAAACGTACGACTCGGTGCTCGCCCTGTCCGCGGCCCTGCAAGCCACCCGAGCCCT
AATGGTGGTCTCCCTGGTGCTGGGTTTGATGGCCATGTTCGTGGGAACCATGGGCATGAA
GTGTACAAACTGTGGGGGAGACGACAAAGTGAAGAAAGCCCGTATAGCCATGACTGGAGG
CATCATTTTCATCGTGGCAGGTCTTTGTGCGTTGATAGCTTGCTCCTGGTATGGCCACCA
GATTGTCACAGACTTTTATAACCCGTTGGTCCCCACAAACGTGAAGTATGAGTTTGGCCC
TGCCATCTTCATTGGCTGGGCAGGGTCCTCTCTGGTCCTCCTGGGAGGTGCGCTGCTCTC
TTGCTCTTGTCCTGGGAGTGAGGGCCAATCTGGGTACCGTGCACCCCGCTCCTACCCTAA
GCCCAATTCTGCCAAGGAGTACGTGTGAGCTGGGCTGCCCTGCCCCAGCCTGGCAGCCTA
TAGGGCACCCCAGACATCTGAAAGGACCTGGGGCAGAGAGCTCAGCCCGTGGGCAGAGTG
CGGAGCAGAAGCCTGCGGTCACTCCAGCCTGGCACACTGTGTACAGTTCCTGGGGGGTTG
GGAGGGGGGACCAAAAGGGGAGAGTGTGTGCTTTTTGTACAGTAATAAAACTATGTTTTG
GAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               CLD7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               CLD7_HUMAN

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               326-899, gnl|bosTau2|chr25 (30057244-30057817)
               

               
               326-899, gnl|Hg17|chr7 (72690164-72690726)
               

               
               326-899, gnl|Mm7|chr5 (133918050-133917482)
               


               
               364-877, gnl|bosTau2|chr17 (43900807-43900296)
               

               
               364-877, gnl|Hg17|chr22 (17886322-17885811)
               

               
               364-877, gnl|Mm7|chr16_random (3263224-3262713)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               326-899, gnl|bosTau2|chr25 (30057244-30057817)
               

               
               326-899, gnl|Hg17|chr7 (72690164-72690726)
               

               
               326-899, gnl|Mm7|chr5 (133918050-133917482)
               


               
               364-877, gnl|bosTau2|chr17 (43900807-43900296)
               

               
               364-877, gnl|Hg17|chr22 (17886322-17885811)
               

               
               364-877, gnl|Mm7|chr16_random (3263224-3262713)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               jej (1.58275)
               

               
               col (1.17005)
               

               
               nco (0.808669)
               

               
               cje (0.660939)
               

               
               eje (0.593003)
               

               
               ill (0.526778)
               

               
               nje (0.33184)
               

               
               pgl (0.236967)
               

               
               duo (0.172801)
               

               
               cki (0.165235)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               nmm (0.132802)

Expressed library(ies): 13 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (1.58275)
               

               
               col (1.17005)
               

               
               nco (0.808669)
               

               
               cje (0.660939)
               

               
               eje (0.593003)
               

               
               ill (0.526778)
               

               
               nje (0.33184)
               

               
               pgl (0.236967)
               

               
               duo (0.172801)
               

               
               cki (0.165235)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               nmm (0.132802)

	326-899, gnl\|bosTau2\|chr25 (30057244-30057817)
	326-899, gnl\|Hg17\|chr7 (72690164-72690726)
	326-899, gnl\|Mm7\|chr5 (133918050-133917482)

	364-877, gnl\|bosTau2\|chr17 (43900807-43900296)
	364-877, gnl\|Hg17\|chr22 (17886322-17885811)
	364-877, gnl\|Mm7\|chr16_random (3263224-3262713)

	jej (1.58275)
	col (1.17005)
	nco (0.808669)
	cje (0.660939)
	eje (0.593003)
	ill (0.526778)
	nje (0.33184)
	pgl (0.236967)
	duo (0.172801)
	cki (0.165235)
	pty (0.142714)
	che (0.136314)
	nmm (0.132802)