Non-Coding RNA Search

Ss1.1-Pig4-TMW8019K12.3

Sequence:


               
               GAGAGTGTGTGACAGCTGCCACGAGTCCATCACAGACGAGGAACGTGCCCTGGTTAAATT
CTTCCATGACAGCAAACATAACATTGTGCACGTGCATTTTGATGCCACCAGAGGATGGCT
ACTGACTTCGGGAACTGACAAGGTTATTAAGTTGTGGGACATGACCCCGGTCGTGTCTTG
ATGCCTCCCAGGCATGAGAAAGATAGTATTTACTCAAGAATCCCAATCATTACTGGAGCC
GTAAAGCAGATGTGTGGATAGGAGGAGAGAAGCTGCAGAGCTGAGCTGAGTTCGCGCGTC
ACCTGCACACGCGGCGGTGACCGGCGAGCGGTGAGCGAGCTCTTGTGAGGGAACTCTTTC
GTCTTGTTCATACGATATAAAAGAAGATATTTTTTTAGAAAATGGTTTACACAGTCTGGC
TGTGCTACCTTGTTTTGAGTATCCTGAAAACTCAGTGTGGACTGTTAGAGTTTTGTAGTT
TGCAGATACTTCATGTTGGTTGTTTTGTGTGTTGGAGAAATGAGGGATGGGGTCTGTTGG
GGGTCTTTGGGGTCGTCGTAGCATAGTTTCCATGCTTTCTTCCACTGGGCACGCATCCTG
TGGTCGGCATCTTTTTCTTCTCGCCTCCGTCTGCCGGGCCCCAGAGCGAACGTCTTCGCC
TTCGCAGCGTATCCGCGGTGTTTCCGTCTCCATCGAGGGGCTGGGAAAACCCTTTGTGTG
CGTTTCCCAACTCACTTCTGAATCACCTGAAGAAGGATCCGTTGGTGACGTCTCGGTCAT
TCGTGTTCTCGTGGAATGGAAATGACCTTGTGTTTCCGCCCCGGTTTCTCTCTGTCTTTC
CCGCATTTAACAAGATGCTGTGAGAAGGCCACTCCCGGCGGCAGAGCCAGACTGTCGTAG
CCCAGCCCTTCACCTCGCAGTGCCTGGAGCATTTCTCAATTCAGTTGGAGCCTTCTGAGC
CTTTGATGTTTTAGTTTTATTAACACAGCTCTCTGTCGCTCATGATATTAAACACGAAAC
CTGTGTCCTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAGTGTGTGACAGCTGCCACGAGTCCATCACAGACGAGGAACGTGCCCTGGTTAAATT
CTTCCATGACAGCAAACATAACATTGTGCACGTGCATTTTGATGCCACCAGAGGATGGCT
ACTGACTTCGGGAACTGACAAGGTTATTAAGTTGTGGGACATGACCCCGGTCGTGTCTTG
ATGCCTCCCAGGCATGAGAAAGATAGTATTTACTCAAGAATCCCAATCATTACTGGAGCC
GTAAAGCAGATGTGTGGATAGGAGGAGAGAAGCTGCAGAGCTGAGCTGAGTTCGCGCGTC
ACCTGCACACGCGGCGGTGACCGGCGAGCGGTGAGCGAGCTCTTGTGAGGGAACTCTTTC
GTCTTGTTCATACGATATAAAAGAAGATATTTTTTTAGAAAATGGTTTACACAGTCTGGC
TGTGCTACCTTGTTTTGAGTATCCTGAAAACTCAGTGTGGACTGTTAGAGTTTTGTAGTT
TGCAGATACTTCATGTTGGTTGTTTTGTGTGTTGGAGAAATGAGGGATGGGGTCTGTTGG
GGGTCTTTGGGGTCGTCGTAGCATAGTTTCCATGCTTTCTTCCACTGGGCACGCATCCTG
TGGTCGGCATCTTTTTCTTCTCGCCTCCGTCTGCCGGGCCCCAGAGCGAACGTCTTCGCC
TTCGCAGCGTATCCGCGGTGTTTCCGTCTCCATCGAGGGGCTGGGAAAACCCTTTGTGTG
CGTTTCCCAACTCACTTCTGAATCACCTGAAGAAGGATCCGTTGGTGACGTCTCGGTCAT
TCGTGTTCTCGTGGAATGGAAATGACCTTGTGTTTCCGCCCCGGTTTCTCTCTGTCTTTC
CCGCATTTAACAAGATGCTGTGAGAAGGCCACTCCCGGCGGCAGAGCCAGACTGTCGTAG
CCCAGCCCTTCACCTCGCAGTGCCTGGAGCATTTCTCAATTCAGTTGGAGCCTTCTGAGC
CTTTGATGTTTTAGTTTTATTAACACAGCTCTCTGTCGCTCATGATATTAAACACGAAAC
CTGTGTCCTTGG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               144-1015, gnl|bosTau2|chr12 (10998719-10999612)
               

               
               144-1015, gnl|Hg17|chr13 (51231868-51232767)
               

               
               144-1015, gnl|Mm7|chr14 (57820147-57821031)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               144-1015, gnl|bosTau2|chr12 (10998719-10999612)
               

               
               144-1015, gnl|Hg17|chr13 (51231868-51232767)
               

               
               144-1015, gnl|Mm7|chr14 (57820147-57821031)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               che (0.136314)
               

               
               eep (0.122564)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               che (0.136314)
               

               
               eep (0.122564)

	144-1015, gnl\|bosTau2\|chr12 (10998719-10999612)
	144-1015, gnl\|Hg17\|chr13 (51231868-51232767)
	144-1015, gnl\|Mm7\|chr14 (57820147-57821031)

	nlu (0.191681)
	mcp (0.170648)
	cki (0.165235)
	nco (0.161734)
	tbr (0.154178)
	che (0.136314)
	eep (0.122564)