Ss1.1-Pig4-TMW8019K20.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTGAGAAGGCGGTTCAGTTTTTTGTACAGGCACTCAGGATGGCTCCTGACCATGAGAAG GCCTGCATTGCTTGCAGAAATGCCAAAGCACTTAAAGCAAAGAAAGAAGATGGAAACAAG GCATTTAAAGAAGGAAATTACAAGCTAGCATATGAACTGTACACAGAAGCCCTGGGGATA GACCCCAACAATATAAAAACAAATGCTAAACTCTACTGTAATCGGGGTACGGTTAATTCC AAGCTTAGGAAACTAGATGATGCAATAGAAGACTGCACACATGCAGTGAAGCTCGATGAC ACTTACATAAAAGCCTACTTGAGAAGAGCGCAGTGTTACATGGACACAGAACAGTATGAA GAAGCAGTGCGGGACTATGAAAAAGTGTATCAGACGGAGAAAACGAAAGAACACAAACAG CTCCTGAAGAATGCACAGCTGGAACTGAAGAAGAGTAAGAGGAAAGATTACTACAAGATC CTTGGAGTAGACAAGAATGCATCTGAGGATGAGATCAAGAAAGCTTACCGGAAACGGGCC TTGATGCACCATCCAGATCGGCACAGCGGAGCCAGTGCGGAAGTTCAGAAGGAGGAGGAG AAAAAGTTCAAGGAAGTTGGAGAAGCTTTTACCATTCTCTCTGATCCCAAGAAAAAGACT CGCTATGACAGTGGGCAAGACCTGGATGAAGAGGGCATGAATATGGGTGATTTCGATGCA AACAATATCTTCAAGGCATTCTTTGGCGGTCCTGGGGGCTTCAGCTTTGAAGCATCCGGT CCAGGGAATTTCTTTTTCCAGTTTGGCTAATGAAACCATCCAGAAACCCAGAAAATGCAG ACTCGCTCAGTGTAACCTCGAATGTGGACACGATTCACCTCCTCCCTTCATCATGTCTCC ACGTCTTTAGAGCAGTTTCGTTTTCTCAGTCGGATACCCTGTGTCTGTGTGAGTGGGTGA AGGAAAGGGAGCCAGCGCCGAAGACTGCGGGTAGGGGGGGAGGTGGGGGGTGGACAGGGC AGCTTGTGAATTTTTGTTTTACTGTTTAACTTTATTAAAAAAGAAAAAAATTAAGAGAAT AAAATGTTTTGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTGAGAAGGCGGTTCAGTTTTTTGTACAGGCACTCAGGATGGCTCCTGACCATGAGAAG GCCTGCATTGCTTGCAGAAATGCCAAAGCACTTAAAGCAAAGAAAGAAGATGGAAACAAG GCATTTAAAGAAGGAAATTACAAGCTAGCATATGAACTGTACACAGAAGCCCTGGGGATA GACCCCAACAATATAAAAACAAATGCTAAACTCTACTGTAATCGGGGTACGGTTAATTCC AAGCTTAGGAAACTAGATGATGCAATAGAAGACTGCACACATGCAGTGAAGCTCGATGAC ACTTACATAAAAGCCTACTTGAGAAGAGCGCAGTGTTACATGGACACAGAACAGTATGAA GAAGCAGTGCGGGACTATGAAAAAGTGTATCAGACGGAGAAAACGAAAGAACACAAACAG CTCCTGAAGAATGCACAGCTGGAACTGAAGAAGAGTAAGAGGAAAGATTACTACAAGATC CTTGGAGTAGACAAGAATGCATCTGAGGATGAGATCAAGAAAGCTTACCGGAAACGGGCC TTGATGCACCATCCAGATCGGCACAGCGGAGCCAGTGCGGAAGTTCAGAAGGAGGAGGAG AAAAAGTTCAAGGAAGTTGGAGAAGCTTTTACCATTCTCTCTGATCCCAAGAAAAAGACT CGCTATGACAGTGGGCAAGACCTGGATGAAGAGGGCATGAATATGGGTGATTTCGATGCA AACAATATCTTCAAGGCATTCTTTGGCGGTCCTGGGGGCTTCAGCTTTGAAGCATCCGGT CCAGGGAATTTCTTTTTCCAGTTTGGCTAATGAAACCATCCAGAAACCCAGAAAATGCAG ACTCGCTCAGTGTAACCTCGAATGTGGACACGATTCACCTCCTCCCTTCATCATGTCTCC ACGTCTTTAGAGCAGTTTCGTTTTCTCAGTCGGATACCCTGTGTCTGTGTGAGTGGGTGA AGGAAAGGGAGCCAGCGCCGAAGACTGCGGGTAGGGGGGGAGGTGGGGGGTGGACAGGGC AGCTTGTGAATTTTTGTTTTACTGTTTAACTTTATTAAAAAAGAAAAAAATTAAGAGAAT AAAATGTTTTGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 132-251, + strand, RNAz p=0.941712 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 132-251, + strand, RNAz p=0.941712 |
| Aligned organism(s): 72 entry(ies) | More info |
| Aligned organism(s): 72 entry(ies) | Help | Less info |
| 64-251, gnl|bosTau2|chr23 (10899-11086) | |
| 64-251, gnl|canFam2|chr11 (29766644-29766796) | |
| 64-251, gnl|danRer3|chr3 (5930097-5929941) | |
| 64-251, gnl|dasNov1|scaffold_98447 (2721-2559) | |
| 64-251, gnl|echTel1|scaffold_300147 (18966-18803) | |
| 64-251, gnl|fr1|chrUn (96684862-96685018) | |
| 64-251, gnl|galGal2|chr27_random (422387-422223) | |
| 64-251, gnl|hg17|chr1 (63538042-63538205) | |
| 64-251, gnl|Hg17|chr17 (37394455-37394272) | |
| 64-251, gnl|loxAfr1|scaffold_18510 (17083-17247) | |
| 64-251, gnl|mm7|chr11 (100699927-100700091) | |
| 64-251, gnl|Mm7|chr11 (100700103-100699922) | |
| 64-251, gnl|monDom2|scaffold_3 (49845038-49844873) | |
| 64-251, gnl|panTro1|chr1 (61874549-61874712) | |
| 64-251, gnl|rheMac2|chr1 (66154544-66154707) | |
| 64-251, gnl|rn3|chr10 (89548865-89549029) | |
| 64-251, gnl|tetNig1|chrUn_random (135908287-135908130) | |
| 64-251, gnl|xenTro1|scaffold_394 (887695-887852) | |
| 555-709, gnl|bosTau2|chr23 (15894-16048) | |
| 555-709, gnl|canFam2|chr11 (29766183-29766333) | |
| 555-709, gnl|canFam2|chr11 (29766331-29766183) | |
| 555-709, gnl|canFam2|chr9 (24201684-24201509) | |
| 555-709, gnl|danRer3|chr3 (5934639-5934490) | |
| 555-709, gnl|danRer3|chr3 (5934639-5934486) | |
| 555-709, gnl|danRer3|chr3 (5934488-5934639) | |
| 555-709, gnl|dasNov1|scaffold_153955 (3584-3409) | |
| 555-709, gnl|dasNov1|scaffold_98447 (3161-3027) | |
| 555-709, gnl|dasNov1|scaffold_98447 (3029-3161) | |
| 555-709, gnl|echTel1|scaffold_277027 (48842-48688) | |
| 555-709, gnl|echTel1|scaffold_277027 (48859-48688) | |
| 555-709, gnl|echTel1|scaffold_277027 (48690-48841) | |
| 555-709, gnl|fr1|chrUn (96683859-96684009) | |
| 555-709, gnl|fr1|chrUn (96683853-96684013) | |
| 555-709, gnl|fr1|chrUn (96684011-96683859) | |
| 555-709, gnl|galGal2|chr27_random (424516-424369) | |
| 555-709, gnl|galGal2|chr27_random (424525-424365) | |
| 555-709, gnl|galGal2|chr27_random (424367-424516) | |
| 555-709, gnl|hg17|chr1 (63537579-63537730) | |
| 555-709, gnl|hg17|chr17 (37387379-37387554) | |
| 555-709, gnl|Hg17|chr17 (37387553-37387399) | |
| 555-709, gnl|hg17|chr6 (139702165-139702313) | |
| 555-709, gnl|loxAfr1|scaffold_18510 (12237-12391) | |
| 555-709, gnl|loxAfr1|scaffold_18510 (12216-12391) | |
| 555-709, gnl|loxAfr1|scaffold_18510 (12389-12237) | |
| 555-709, gnl|mm7|chr11 (100693251-100693405) | |
| 555-709, gnl|mm7|chr11 (100693231-100693405) | |
| 555-709, gnl|mm7|chr11 (100693403-100693251) | |
| 555-709, gnl|Mm7|chr11 (100693404-100693250) | |
| 555-709, gnl|monDom2|scaffold_18 (52293642-52293817) | |
| 555-709, gnl|monDom2|scaffold_3 (49845502-49845348) | |
| 555-709, gnl|monDom2|scaffold_3 (49845350-49845502) | |
| 555-709, gnl|oryCun1|scaffold_203567 (8534-8688) | |
| 555-709, gnl|oryCun1|scaffold_203567 (8513-8688) | |
| 555-709, gnl|oryCun1|scaffold_203567 (8686-8534) | |
| 555-709, gnl|panTro1|chr1 (61874086-61874237) | |
| 555-709, gnl|panTro1|chr19 (40588629-40588804) | |
| 555-709, gnl|panTro1|chr5 (142529834-142529982) | |
| 555-709, gnl|rheMac2|chr1 (66154081-66154232) | |
| 555-709, gnl|rheMac2|chr16 (52088728-52088903) | |
| 555-709, gnl|rheMac2|chr4 (124486269-124486121) | |
| 555-709, gnl|rn3|chr10 (89542585-89542739) | |
| 555-709, gnl|rn3|chr10 (89542565-89542739) | |
| 555-709, gnl|rn3|chr10 (89542737-89542586) | |
| 555-709, gnl|tetNig1|chr2_random (42319-42461) | |
| 555-709, gnl|tetNig1|chrUn_random (135909318-135909168) | |
| 555-709, gnl|tetNig1|chrUn_random (135909166-135909317) | |
| 555-709, gnl|xenTro1|scaffold_394 (883864-884014) | |
| 555-709, gnl|xenTro1|scaffold_394 (883839-884018) | |
| 555-709, gnl|xenTro1|scaffold_394 (884016-883864) | |
| 768-1092, gnl|bosTau2|chr23 (18432-18763) | |
| 768-1092, gnl|Hg17|chr17 (37382319-37381988) | |
| 768-1092, gnl|Mm7|chr11 (100692181-100691862) |
| Aligned organism(s): 72 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 64-251, gnl|bosTau2|chr23 (10899-11086) | |
| 64-251, gnl|canFam2|chr11 (29766644-29766796) | |
| 64-251, gnl|danRer3|chr3 (5930097-5929941) | |
| 64-251, gnl|dasNov1|scaffold_98447 (2721-2559) | |
| 64-251, gnl|echTel1|scaffold_300147 (18966-18803) | |
| 64-251, gnl|fr1|chrUn (96684862-96685018) | |
| 64-251, gnl|galGal2|chr27_random (422387-422223) | |
| 64-251, gnl|hg17|chr1 (63538042-63538205) | |
| 64-251, gnl|Hg17|chr17 (37394455-37394272) | |
| 64-251, gnl|loxAfr1|scaffold_18510 (17083-17247) | |
| 64-251, gnl|mm7|chr11 (100699927-100700091) | |
| 64-251, gnl|Mm7|chr11 (100700103-100699922) | |
| 64-251, gnl|monDom2|scaffold_3 (49845038-49844873) | |
| 64-251, gnl|panTro1|chr1 (61874549-61874712) | |
| 64-251, gnl|rheMac2|chr1 (66154544-66154707) | |
| 64-251, gnl|rn3|chr10 (89548865-89549029) | |
| 64-251, gnl|tetNig1|chrUn_random (135908287-135908130) | |
| 64-251, gnl|xenTro1|scaffold_394 (887695-887852) | |
| 555-709, gnl|bosTau2|chr23 (15894-16048) | |
| 555-709, gnl|canFam2|chr11 (29766183-29766333) | |
| 555-709, gnl|canFam2|chr11 (29766331-29766183) | |
| 555-709, gnl|canFam2|chr9 (24201684-24201509) | |
| 555-709, gnl|danRer3|chr3 (5934639-5934490) | |
| 555-709, gnl|danRer3|chr3 (5934639-5934486) | |
| 555-709, gnl|danRer3|chr3 (5934488-5934639) | |
| 555-709, gnl|dasNov1|scaffold_153955 (3584-3409) | |
| 555-709, gnl|dasNov1|scaffold_98447 (3161-3027) | |
| 555-709, gnl|dasNov1|scaffold_98447 (3029-3161) | |
| 555-709, gnl|echTel1|scaffold_277027 (48842-48688) | |
| 555-709, gnl|echTel1|scaffold_277027 (48859-48688) | |
| 555-709, gnl|echTel1|scaffold_277027 (48690-48841) | |
| 555-709, gnl|fr1|chrUn (96683859-96684009) | |
| 555-709, gnl|fr1|chrUn (96683853-96684013) | |
| 555-709, gnl|fr1|chrUn (96684011-96683859) | |
| 555-709, gnl|galGal2|chr27_random (424516-424369) | |
| 555-709, gnl|galGal2|chr27_random (424525-424365) | |
| 555-709, gnl|galGal2|chr27_random (424367-424516) | |
| 555-709, gnl|hg17|chr1 (63537579-63537730) | |
| 555-709, gnl|hg17|chr17 (37387379-37387554) | |
| 555-709, gnl|Hg17|chr17 (37387553-37387399) | |
| 555-709, gnl|hg17|chr6 (139702165-139702313) | |
| 555-709, gnl|loxAfr1|scaffold_18510 (12237-12391) | |
| 555-709, gnl|loxAfr1|scaffold_18510 (12216-12391) | |
| 555-709, gnl|loxAfr1|scaffold_18510 (12389-12237) | |
| 555-709, gnl|mm7|chr11 (100693251-100693405) | |
| 555-709, gnl|mm7|chr11 (100693231-100693405) | |
| 555-709, gnl|mm7|chr11 (100693403-100693251) | |
| 555-709, gnl|Mm7|chr11 (100693404-100693250) | |
| 555-709, gnl|monDom2|scaffold_18 (52293642-52293817) | |
| 555-709, gnl|monDom2|scaffold_3 (49845502-49845348) | |
| 555-709, gnl|monDom2|scaffold_3 (49845350-49845502) | |
| 555-709, gnl|oryCun1|scaffold_203567 (8534-8688) | |
| 555-709, gnl|oryCun1|scaffold_203567 (8513-8688) | |
| 555-709, gnl|oryCun1|scaffold_203567 (8686-8534) | |
| 555-709, gnl|panTro1|chr1 (61874086-61874237) | |
| 555-709, gnl|panTro1|chr19 (40588629-40588804) | |
| 555-709, gnl|panTro1|chr5 (142529834-142529982) | |
| 555-709, gnl|rheMac2|chr1 (66154081-66154232) | |
| 555-709, gnl|rheMac2|chr16 (52088728-52088903) | |
| 555-709, gnl|rheMac2|chr4 (124486269-124486121) | |
| 555-709, gnl|rn3|chr10 (89542585-89542739) | |
| 555-709, gnl|rn3|chr10 (89542565-89542739) | |
| 555-709, gnl|rn3|chr10 (89542737-89542586) | |
| 555-709, gnl|tetNig1|chr2_random (42319-42461) | |
| 555-709, gnl|tetNig1|chrUn_random (135909318-135909168) | |
| 555-709, gnl|tetNig1|chrUn_random (135909166-135909317) | |
| 555-709, gnl|xenTro1|scaffold_394 (883864-884014) | |
| 555-709, gnl|xenTro1|scaffold_394 (883839-884018) | |
| 555-709, gnl|xenTro1|scaffold_394 (884016-883864) | |
| 768-1092, gnl|bosTau2|chr23 (18432-18763) | |
| 768-1092, gnl|Hg17|chr17 (37382319-37381988) | |
| 768-1092, gnl|Mm7|chr11 (100692181-100691862) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| cki (0.330469) | |
| sme (0.305437) | |
| tes (0.207814) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| med (0.116252) | |
| spc (0.113366) | |
| ldo (0.0970026) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.330469) | |
| sme (0.305437) | |
| tes (0.207814) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| med (0.116252) | |
| spc (0.113366) | |
| ldo (0.0970026) |