Ss1.1-Pig4-TMW8019K22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAGGTGGTGCAGGCGGTGCAAGCGGTTCATCTGGAGTCGGATGCTTTCCTCGTCTGTCT CAACCACGCTCTGAGCACCGAGAAGGAGGAGGTGATGGGCCTGTGCATAGGCGAGTTGAA TGATGACCCAAGGAGTGACCCCAAATTTACATATACTGGAACTGAAATGCGCACAGTTGC TGAAAAGGTCGACGCCGTGCGAATTGTTCACATTCATTCTGTCATCATCTTGCGACGTTC CGATAAGAGGAAGGATCGAGTGGAAATTTCTCCCGAGCAGCTGTCTGCGGCCTCCACAGA GGCAGAGAGATTGGCTGAACTCACAGGTCGCCCGATGAGAGTCGTGGGCTGGTATCACTC CCACCCCCACATAACTGTTTGGCCTTCACACGTTGATGTTCGCACACAAGCCATGTACCA GATGATGGATCAAGGCTTTGTAGGACTTATATTTTCCTGTTTCATAGAAGATAAAAACAC AAAGACTGGCCGGGTACTCTACACTTGCTTTCAATCCATACAGGCCCAAAAGAGCTCAGA GTATGAGAGAATTGAAATCCCGATCCATGTTGTGCCTCACGTAGCCGTTGGGAAGGTGTG CCTCGAGTCAGCGGTTGAGCTGCCCAAGATCCTGTGCCAGGAGGAGCAGGACGCCTATAG GAGGATCCACAGCCTTACACATCTGGACTCAGTGACCAAGATCCATAATGGCTCAGTGTT TACCAAGAATCTGTGCAGTCAGATGTCCGCAGTGAGCGGGCCTCTGCTTCAGTGGCTGGA GGACAGACTGGAGCAGAACCAGCAGCATCTGCAGGAGCTGCAACAAGAAAAGGAAGAGCT GATGCAGGAACTTTCTTCTCTGGAATAAAGCGGAAGCCAAAATGAGGGAGGATGGAAACA TCGGGTGTCAAATTCAGCAAGAAGAACAATTTGGAGATTTCCTCTGATGCCGCAGTCGTC CGCACGGTCCCGTGGACGCCCGACTGATTTCGGCACAAAAGCCGCTCAGCGCAGGAAGGA CGGTCTTTCCACGGATGATGCTGGAGCAATTGGCGAAACTCAAAAAACCCACTTTGACGA AACCGCATACCTTACACAAAATTCACTTCAAAATGTGTCATGAACTTGGATGTAAGATAT TAAACTCTAAAACTTTTCGAAAAAAATCATAGAAAAATCTTTAGAATCTCGGGCTAGGCA ACAGGTTCTTGGCCTTCACTCTGAAAGCATAATCCTCAAAGGAAAAAGTGGATAGATTGG ACTTAAGATGAAAAACTCTGCAAAAAAATTTAAGAGGAGGAAATTACTGAGAGAAATTAT TTGCAAACCATTTATCTAAATCAATTTAGACTATATAAAGTGAGGAGTAAACAACAATTA GAAAATGAGCAGAAGACTTGAATAGACATCACTAAAGAGGGTACATGGCTGGCAAGCCAG CACTTCCTTAGTCATCGAGGCATGAGATTAAAACTATAATGAATTATGTCTACCTTCTTA ACCAATTAAAACTACAATGGATTATGACTACACACTTAATAGTGAAAATACCAGTTGCTG TTGAGCATGCAAACTGGATCTCTCCAGGGTGTAAAGTGTAAGCCACTCTGTAAGCCACTC TGGACAAAAGAGTTTGGAAATTTCTAATAAAGTTAAACACACACATACTTTATTACCCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAGGTGGTGCAGGCGGTGCAAGCGGTTCATCTGGAGTCGGATGCTTTCCTCGTCTGTCT CAACCACGCTCTGAGCACCGAGAAGGAGGAGGTGATGGGCCTGTGCATAGGCGAGTTGAA TGATGACCCAAGGAGTGACCCCAAATTTACATATACTGGAACTGAAATGCGCACAGTTGC TGAAAAGGTCGACGCCGTGCGAATTGTTCACATTCATTCTGTCATCATCTTGCGACGTTC CGATAAGAGGAAGGATCGAGTGGAAATTTCTCCCGAGCAGCTGTCTGCGGCCTCCACAGA GGCAGAGAGATTGGCTGAACTCACAGGTCGCCCGATGAGAGTCGTGGGCTGGTATCACTC CCACCCCCACATAACTGTTTGGCCTTCACACGTTGATGTTCGCACACAAGCCATGTACCA GATGATGGATCAAGGCTTTGTAGGACTTATATTTTCCTGTTTCATAGAAGATAAAAACAC AAAGACTGGCCGGGTACTCTACACTTGCTTTCAATCCATACAGGCCCAAAAGAGCTCAGA GTATGAGAGAATTGAAATCCCGATCCATGTTGTGCCTCACGTAGCCGTTGGGAAGGTGTG CCTCGAGTCAGCGGTTGAGCTGCCCAAGATCCTGTGCCAGGAGGAGCAGGACGCCTATAG GAGGATCCACAGCCTTACACATCTGGACTCAGTGACCAAGATCCATAATGGCTCAGTGTT TACCAAGAATCTGTGCAGTCAGATGTCCGCAGTGAGCGGGCCTCTGCTTCAGTGGCTGGA GGACAGACTGGAGCAGAACCAGCAGCATCTGCAGGAGCTGCAACAAGAAAAGGAAGAGCT GATGCAGGAACTTTCTTCTCTGGAATAAAGCGGAAGCCAAAATGAGGGAGGATGGAAACA TCGGGTGTCAAATTCAGCAAGAAGAACAATTTGGAGATTTCCTCTGATGCCGCAGTCGTC CGCACGGTCCCGTGGACGCCCGACTGATTTCGGCACAAAAGCCGCTCAGCGCAGGAAGGA CGGTCTTTCCACGGATGATGCTGGAGCAATTGGCGAAACTCAAAAAACCCACTTTGACGA AACCGCATACCTTACACAAAATTCACTTCAAAATGTGTCATGAACTTGGATGTAAGATAT TAAACTCTAAAACTTTTCGAAAAAAATCATAGAAAAATCTTTAGAATCTCGGGCTAGGCA ACAGGTTCTTGGCCTTCACTCTGAAAGCATAATCCTCAAAGGAAAAAGTGGATAGATTGG ACTTAAGATGAAAAACTCTGCAAAAAAATTTAAGAGGAGGAAATTACTGAGAGAAATTAT TTGCAAACCATTTATCTAAATCAATTTAGACTATATAAAGTGAGGAGTAAACAACAATTA GAAAATGAGCAGAAGACTTGAATAGACATCACTAAAGAGGGTACATGGCTGGCAAGCCAG CACTTCCTTAGTCATCGAGGCATGAGATTAAAACTATAATGAATTATGTCTACCTTCTTA ACCAATTAAAACTACAATGGATTATGACTACACACTTAATAGTGAAAATACCAGTTGCTG TTGAGCATGCAAACTGGATCTCTCCAGGGTGTAAAGTGTAAGCCACTCTGTAAGCCACTC TGGACAAAAGAGTTTGGAAATTTCTAATAAAGTTAAACACACACATACTTTATTACCCAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 1-115, gnl|bosTau2|chrX (13162720-13162606) | |
| 1-115, gnl|canFam2|chr32 (27678616-27678496) | |
| 1-115, gnl|danRer3|chrNA (17399561-17399674) | |
| 1-115, gnl|dasNov1|scaffold_116155 (4381-4527) | |
| 1-115, gnl|echTel1|scaffold_276923 (1313-1454) | |
| 1-115, gnl|fr1|chrUn (202377197-202377061) | |
| 1-115, gnl|hg17|chrX (153863498-153863648) | |
| 1-115, gnl|Hg17|chrX (153863515-153863629) | |
| 1-115, gnl|mm7|chrX (70803364-70803505) | |
| 1-115, gnl|Mm7|chrX (70803376-70803490) | |
| 1-115, gnl|monDom2|scaffold_306 (46752-46880) | |
| 1-115, gnl|oryCun1|scaffold_170787 (5189-5039) | |
| 1-115, gnl|panTro1|chrX (159162639-159162789) | |
| 1-115, gnl|rheMac2|chrX (153093769-153093919) | |
| 1-115, gnl|rn3|chr18 (106368-106221) | |
| 1-115, gnl|tetNig1|chrUn_random (19643658-19643553) | |
| 186-311, gnl|bosTau2|chrX (13154643-13154518) | |
| 186-311, gnl|canFam2|chrX (126109628-126109765) | |
| 186-311, gnl|danRer3|chrNA (17399756-17399886) | |
| 186-311, gnl|dasNov1|scaffold_11906 (8810-8947) | |
| 186-311, gnl|echTel1|scaffold_168012 (2267-2401) | |
| 186-311, gnl|fr1|chrUn (202377060-202376943) | |
| 186-311, gnl|hg17|chrX (153869148-153869285) | |
| 186-311, gnl|Hg17|chrX (153869147-153869272) | |
| 186-311, gnl|mm7|chrX (70809427-70809564) | |
| 186-311, gnl|Mm7|chrX (70809426-70809551) | |
| 186-311, gnl|monDom2|scaffold_306 (48591-48728) | |
| 186-311, gnl|oryCun1|scaffold_179693 (5087-4950) | |
| 186-311, gnl|panTro1|chrX (159168360-159168497) | |
| 186-311, gnl|rheMac2|chrX (153099467-153099604) | |
| 186-311, gnl|rn3|chrUn_random (6181004-6181125) | |
| 186-311, gnl|tetNig1|chrUn_random (19643552-19643436) | |
| 186-311, gnl|xenTro1|scaffold_247 (1098751-1098612) | |
| 997-1274, gnl|bosTau2|chrX (1047439-1047712) | |
| 1056-1264, gnl|bosTau2|chrX (3246235-3246030) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-115, gnl|bosTau2|chrX (13162720-13162606) | |
| 1-115, gnl|canFam2|chr32 (27678616-27678496) | |
| 1-115, gnl|danRer3|chrNA (17399561-17399674) | |
| 1-115, gnl|dasNov1|scaffold_116155 (4381-4527) | |
| 1-115, gnl|echTel1|scaffold_276923 (1313-1454) | |
| 1-115, gnl|fr1|chrUn (202377197-202377061) | |
| 1-115, gnl|hg17|chrX (153863498-153863648) | |
| 1-115, gnl|Hg17|chrX (153863515-153863629) | |
| 1-115, gnl|mm7|chrX (70803364-70803505) | |
| 1-115, gnl|Mm7|chrX (70803376-70803490) | |
| 1-115, gnl|monDom2|scaffold_306 (46752-46880) | |
| 1-115, gnl|oryCun1|scaffold_170787 (5189-5039) | |
| 1-115, gnl|panTro1|chrX (159162639-159162789) | |
| 1-115, gnl|rheMac2|chrX (153093769-153093919) | |
| 1-115, gnl|rn3|chr18 (106368-106221) | |
| 1-115, gnl|tetNig1|chrUn_random (19643658-19643553) | |
| 186-311, gnl|bosTau2|chrX (13154643-13154518) | |
| 186-311, gnl|canFam2|chrX (126109628-126109765) | |
| 186-311, gnl|danRer3|chrNA (17399756-17399886) | |
| 186-311, gnl|dasNov1|scaffold_11906 (8810-8947) | |
| 186-311, gnl|echTel1|scaffold_168012 (2267-2401) | |
| 186-311, gnl|fr1|chrUn (202377060-202376943) | |
| 186-311, gnl|hg17|chrX (153869148-153869285) | |
| 186-311, gnl|Hg17|chrX (153869147-153869272) | |
| 186-311, gnl|mm7|chrX (70809427-70809564) | |
| 186-311, gnl|Mm7|chrX (70809426-70809551) | |
| 186-311, gnl|monDom2|scaffold_306 (48591-48728) | |
| 186-311, gnl|oryCun1|scaffold_179693 (5087-4950) | |
| 186-311, gnl|panTro1|chrX (159168360-159168497) | |
| 186-311, gnl|rheMac2|chrX (153099467-153099604) | |
| 186-311, gnl|rn3|chrUn_random (6181004-6181125) | |
| 186-311, gnl|tetNig1|chrUn_random (19643552-19643436) | |
| 186-311, gnl|xenTro1|scaffold_247 (1098751-1098612) | |
| 997-1274, gnl|bosTau2|chrX (1047439-1047712) | |
| 1056-1264, gnl|bosTau2|chrX (3246235-3246030) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| pla (0.401016) | |
| spl (0.286369) | |
| cbe (0.239234) | |
| nms (0.213858) | |
| fco (0.157208) | |
| isp (0.150376) | |
| fat (0.147427) | |
| cst (0.140036) | |
| ute (0.132784) | |
| kid (0.129735) | |
| cly (0.120642) | |
| ebs (0.118301) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.401016) | |
| spl (0.286369) | |
| cbe (0.239234) | |
| nms (0.213858) | |
| fco (0.157208) | |
| isp (0.150376) | |
| fat (0.147427) | |
| cst (0.140036) | |
| ute (0.132784) | |
| kid (0.129735) | |
| cly (0.120642) | |
| ebs (0.118301) |