Non-Coding RNA Search

Ss1.1-Pig4-TMW8019K22.5

Sequence:


               
               GCTTGTTGGGACACGTGACTAGAAGTCAGGGCCCTAAGCAGCGCTCGACGTAGAGGACGA
AGTGATTTGAGAAGATACAAGGGAAAGAACTCTTCTCTGTAGACAAAATTATTTTTTCCA
CTGGAACACATTGAGTGTATGCCCAGCATTGATGAAAGCCAGCAAAGAAACAAAGCGCCT
TTTTGTGGGTGGCCTTGGCCAGAACATTTCTGAAGGAGACCTACAAAATCAGTTCAACAG
GTTTGGAGAAGTTTCTGATGTGGAGATTATCACTAGGAAAGATGACCAAGGAAATCCACA
GAAAGTCTTTGCATATGTCAACATCAGAATAGCAGAAGCAGACCTGAAAAAATGTATGTC
TGTTTTAAATAAAACAAAATGGAAAGGCGGAACCCTACAGATTCAGCTGGCAAAAGAAAG
CTTTTTGCACAGATTGGCTCAAGAGAGAGAAGAAGCAAAAGCAGCAAAAGAAAAACCAAC
AGCAGTCAACACCAACTTGTTAGAAAAGATGGGAGTGGTGGATTTCCATGTGAAAGCTGT
GCCAGGGACAGAAATACCAGGGCACAAAAATTGGGTCGTAAGTAAATTTGGAAGAGTCTT
ACCTGTCCTTCACCTAAAGAATCGACATAAACGTAAAATCATAAAGTATGATCCATCAAA
ATACTGCCACAACTTAAAGAAGATAGGGGAAGATTTCACAAATGCTAACCCTATATCCAA
CCTCACTTGGGAATTGGAAGGAGGAAATGATCCTATAAGTAAGAAACGGCGAGGAGAGTT
CTCTGACTTTCATAGCCCTCCTAAGAAGATAATAAAAGTGCAGAAGAATGAGGGTTCCAC
TGCATCTCCAGCTGTTAGACCAAAACCCAGTAGAATAACGGAGAGACCATGGTTAAAACA
ACAGGCTGCACAAAAAACGCCTGATGGTCCCATCACACCTAAATTATCCTATATATCTGA
TTCTGAAAGTCAGATACTTAAAAATGTATTTTTTCAGACTTCTGGCTTAGAAACTACCAA
GAACAGAAATAGCATGTCTGATGATGATATCGATTCTGAAGATGAATTAAGACTAACGAT
CGCAAGAGAGGAAAACTTGGAGAAAAGCACATGGCCTTTAGTAAATGAATCTGAAAATGA
TCCCTTTGAAGTTGTAAGGGATGATTTTAAATCAGATTCTCACAAATTTCATACTTCAAT
AGGTTTAGGCCTCAAAAATAACATTTCTTCCCTTGATAGTGAAGATAATGTTATGGGAAA
TGATTATGACTCTGATTCAGGAGATACGGATGAAATCATTACAAGGAACAAAAATGCTGG
TAAGATCAAAAACAGTATAGCACTCTCACAAATGGAAAAGTCTATACACAAGAAAACTTC
TTCGAAAAATAGAAAAAAGTGTGATCTTTCTGATTCTATTAAAGAACAAAAAAGAAAAAA
CAATGTAGAGATAGCCGTCAGTCACAGAGTTAAGATGCCTAGTCGTAAATCTCTAGCTGA
CTCTAGTGGCAGTGAAGATGCGGATTCTGCATCAGAGTCCGCCGAGTCCGGAGGGGATAA
GGAGTATCACACTATGATGAACTGTGTCCATGTGACTCTCACTTTAGCTGATTTGGAACA
GTTGGCTAGCAGTAACCAGGAGGCGCCAAAAGAAGATACTGAGAGTAATGGCCAGGAAAC
CACTGCCAAGCGTGACAGGGCCTCCAAAAGCCACAGGACTCTTGGTGGCCTCCACAAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTGTTGGGACACGTGACTAGAAGTCAGGGCCCTAAGCAGCGCTCGACGTAGAGGACGA
AGTGATTTGAGAAGATACAAGGGAAAGAACTCTTCTCTGTAGACAAAATTATTTTTTCCA
CTGGAACACATTGAGTGTATGCCCAGCATTGATGAAAGCCAGCAAAGAAACAAAGCGCCT
TTTTGTGGGTGGCCTTGGCCAGAACATTTCTGAAGGAGACCTACAAAATCAGTTCAACAG
GTTTGGAGAAGTTTCTGATGTGGAGATTATCACTAGGAAAGATGACCAAGGAAATCCACA
GAAAGTCTTTGCATATGTCAACATCAGAATAGCAGAAGCAGACCTGAAAAAATGTATGTC
TGTTTTAAATAAAACAAAATGGAAAGGCGGAACCCTACAGATTCAGCTGGCAAAAGAAAG
CTTTTTGCACAGATTGGCTCAAGAGAGAGAAGAAGCAAAAGCAGCAAAAGAAAAACCAAC
AGCAGTCAACACCAACTTGTTAGAAAAGATGGGAGTGGTGGATTTCCATGTGAAAGCTGT
GCCAGGGACAGAAATACCAGGGCACAAAAATTGGGTCGTAAGTAAATTTGGAAGAGTCTT
ACCTGTCCTTCACCTAAAGAATCGACATAAACGTAAAATCATAAAGTATGATCCATCAAA
ATACTGCCACAACTTAAAGAAGATAGGGGAAGATTTCACAAATGCTAACCCTATATCCAA
CCTCACTTGGGAATTGGAAGGAGGAAATGATCCTATAAGTAAGAAACGGCGAGGAGAGTT
CTCTGACTTTCATAGCCCTCCTAAGAAGATAATAAAAGTGCAGAAGAATGAGGGTTCCAC
TGCATCTCCAGCTGTTAGACCAAAACCCAGTAGAATAACGGAGAGACCATGGTTAAAACA
ACAGGCTGCACAAAAAACGCCTGATGGTCCCATCACACCTAAATTATCCTATATATCTGA
TTCTGAAAGTCAGATACTTAAAAATGTATTTTTTCAGACTTCTGGCTTAGAAACTACCAA
GAACAGAAATAGCATGTCTGATGATGATATCGATTCTGAAGATGAATTAAGACTAACGAT
CGCAAGAGAGGAAAACTTGGAGAAAAGCACATGGCCTTTAGTAAATGAATCTGAAAATGA
TCCCTTTGAAGTTGTAAGGGATGATTTTAAATCAGATTCTCACAAATTTCATACTTCAAT
AGGTTTAGGCCTCAAAAATAACATTTCTTCCCTTGATAGTGAAGATAATGTTATGGGAAA
TGATTATGACTCTGATTCAGGAGATACGGATGAAATCATTACAAGGAACAAAAATGCTGG
TAAGATCAAAAACAGTATAGCACTCTCACAAATGGAAAAGTCTATACACAAGAAAACTTC
TTCGAAAAATAGAAAAAAGTGTGATCTTTCTGATTCTATTAAAGAACAAAAAAGAAAAAA
CAATGTAGAGATAGCCGTCAGTCACAGAGTTAAGATGCCTAGTCGTAAATCTCTAGCTGA
CTCTAGTGGCAGTGAAGATGCGGATTCTGCATCAGAGTCCGCCGAGTCCGGAGGGGATAA
GGAGTATCACACTATGATGAACTGTGTCCATGTGACTCTCACTTTAGCTGATTTGGAACA
GTTGGCTAGCAGTAACCAGGAGGCGCCAAAAGAAGATACTGAGAGTAATGGCCAGGAAAC
CACTGCCAAGCGTGACAGGGCCTCCAAAAGCCACAGGACTCTTGGTGGCCTCCACAAAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5TCD6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5TCD6_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               712-831, - strand, RNAz p=0.936654
               

               
               1614-1740, - strand, RNAz p=0.998738

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               712-831, - strand, RNAz p=0.936654
               

               
               1614-1740, - strand, RNAz p=0.998738

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               73-294, gnl|bosTau2|chr8 (46661533-46661746)
               

               
               73-294, gnl|Hg17|chr9 (92166080-92165857)
               

               
               73-294, gnl|Mm7|chr13 (49138208-49138383)
               


               
               430-568, gnl|bosTau2|chr8 (46665879-46666017)
               

               
               430-568, gnl|Hg17|chr9 (92161196-92161058)
               

               
               430-568, gnl|Mm7|chr13 (49142570-49142708)
               


               
               633-1740, gnl|bosTau2|chr8 (46667672-46668761)
               

               
               633-1740, gnl|Hg17|chr9 (92157980-92156858)
               

               
               633-1740, gnl|Mm7|chr13 (49144830-49145883)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               73-294, gnl|bosTau2|chr8 (46661533-46661746)
               

               
               73-294, gnl|Hg17|chr9 (92166080-92165857)
               

               
               73-294, gnl|Mm7|chr13 (49138208-49138383)
               


               
               430-568, gnl|bosTau2|chr8 (46665879-46666017)
               

               
               430-568, gnl|Hg17|chr9 (92161196-92161058)
               

               
               430-568, gnl|Mm7|chr13 (49142570-49142708)
               


               
               633-1740, gnl|bosTau2|chr8 (46667672-46668761)
               

               
               633-1740, gnl|Hg17|chr9 (92157980-92156858)
               

               
               633-1740, gnl|Mm7|chr13 (49144830-49145883)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               isp (0.150376)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.150376)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	712-831, - strand, RNAz p=0.936654
	1614-1740, - strand, RNAz p=0.998738

	73-294, gnl\|bosTau2\|chr8 (46661533-46661746)
	73-294, gnl\|Hg17\|chr9 (92166080-92165857)
	73-294, gnl\|Mm7\|chr13 (49138208-49138383)

	430-568, gnl\|bosTau2\|chr8 (46665879-46666017)
	430-568, gnl\|Hg17\|chr9 (92161196-92161058)
	430-568, gnl\|Mm7\|chr13 (49142570-49142708)

	633-1740, gnl\|bosTau2\|chr8 (46667672-46668761)
	633-1740, gnl\|Hg17\|chr9 (92157980-92156858)
	633-1740, gnl\|Mm7\|chr13 (49144830-49145883)