Ss1.1-Pig4-TMW8019L02.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCGGGGTCGCGGAGGGCCGGCTCCTGCGGCTGCGACGGGATGACCACTCTCCGGGCTTT CACGTGCGACGACCTGTTCCGCTTCAACAATATTAACTTGGATCCACTTACAGAAACTTA TGGGATCCCCTTTTACTTACAGTACCTCGCCCATTGGCCAGAGTACTTCATCGTTGCAGA GGCGCCCGGTGGAGAGTTAATGGGTTATATCATGGGGAAGGCAGAAGGCTCGGTGGCAAG GGAAGAATGGCACGGGCACGTCACAGCTCTTTCTGTTGCCCCAGAATTTCGACGCCTTGG CTTGGCTGCTAAACTTATGGAGTTATTAGAGGAGATATCTGAAAGAAAGGGTGGATTTTT TGTCGACCTCTTTGTGAGAGTGTCTAACCAAGTTGCAGTCAACATGTACAAGCAGCTGGG CTACAGCGTGTACAGGACCGTGATAGAGTACTACTCGGCCAGCAACGGGGAGCCCGACGA GGATGCTTATGATATGAGAAAAGCACTTTCCAGGGACACTGAGAAGAAATCCATCATACC ACTACCTCATCCTGTGAGGCCTGAAGACATTGAATAACCATAAGCAGTGGTTCTTAGGCT GATGATGCTCCAGATAGTTTATGGACAATATTATTTTCATTAGATGATCCTGGAGCTCTA TTAGGAGAAAAGGGAATTGTTTAGATCTTAAAGATTTTAAGAAAATACAAGTTTATAGAA CGCTTTAAATCTCGTTTCCAGTTAGCAATATCATACCTCCTAAAGCTGTTCACTATAATA AAGTTCAACCAAAAAGGCAGCTAGGGCAGAAGGGAACATTCCACTGTCATAATATTCACA ATATGCTAGAGAAAAAGCTCACTCCAGTCTCCTAATTCTGTGCCTGAGAACCACTGCTAC ATAGATATATTTTGTATTGAACTGTTCATTGAAGCTTTAAAAGCATTTATGAAATATATA AATCTAAGCTGTAAAATAAAATGCATTGTTGACTATAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCGGGGTCGCGGAGGGCCGGCTCCTGCGGCTGCGACGGGATGACCACTCTCCGGGCTTT CACGTGCGACGACCTGTTCCGCTTCAACAATATTAACTTGGATCCACTTACAGAAACTTA TGGGATCCCCTTTTACTTACAGTACCTCGCCCATTGGCCAGAGTACTTCATCGTTGCAGA GGCGCCCGGTGGAGAGTTAATGGGTTATATCATGGGGAAGGCAGAAGGCTCGGTGGCAAG GGAAGAATGGCACGGGCACGTCACAGCTCTTTCTGTTGCCCCAGAATTTCGACGCCTTGG CTTGGCTGCTAAACTTATGGAGTTATTAGAGGAGATATCTGAAAGAAAGGGTGGATTTTT TGTCGACCTCTTTGTGAGAGTGTCTAACCAAGTTGCAGTCAACATGTACAAGCAGCTGGG CTACAGCGTGTACAGGACCGTGATAGAGTACTACTCGGCCAGCAACGGGGAGCCCGACGA GGATGCTTATGATATGAGAAAAGCACTTTCCAGGGACACTGAGAAGAAATCCATCATACC ACTACCTCATCCTGTGAGGCCTGAAGACATTGAATAACCATAAGCAGTGGTTCTTAGGCT GATGATGCTCCAGATAGTTTATGGACAATATTATTTTCATTAGATGATCCTGGAGCTCTA TTAGGAGAAAAGGGAATTGTTTAGATCTTAAAGATTTTAAGAAAATACAAGTTTATAGAA CGCTTTAAATCTCGTTTCCAGTTAGCAATATCATACCTCCTAAAGCTGTTCACTATAATA AAGTTCAACCAAAAAGGCAGCTAGGGCAGAAGGGAACATTCCACTGTCATAATATTCACA ATATGCTAGAGAAAAAGCTCACTCCAGTCTCCTAATTCTGTGCCTGAGAACCACTGCTAC ATAGATATATTTTGTATTGAACTGTTCATTGAAGCTTTAAAAGCATTTATGAAATATATA AATCTAAGCTGTAAAATAAAATGCATTGTTGACTATAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 530-648, + strand, RNAz p=0.561075 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 530-648, + strand, RNAz p=0.561075 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_016100, + |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 344-489, gnl|bosTau2|chr13 (26838409-26838264) | |
| 344-489, gnl|canFam2|chr11 (8083106-8082963) | |
| 344-489, gnl|canFam2|chr24 (6314054-6313947) | |
| 344-489, gnl|danRer3|chrNA (38476239-38476094) | |
| 344-489, gnl|danRer3|chrNA (38476077-38476180) | |
| 344-489, gnl|dasNov1|scaffold_16257 (18908-19048) | |
| 344-489, gnl|dasNov1|scaffold_16257 (19074-18965) | |
| 344-489, gnl|echTel1|scaffold_28076 (979-833) | |
| 344-489, gnl|echTel1|scaffold_28076 (835-920) | |
| 344-489, gnl|fr1|chrUn (67006279-67006424) | |
| 344-489, gnl|fr1|chrUn (67006435-67006338) | |
| 344-489, gnl|galGal2|chr7 (37324526-37324633) | |
| 344-489, gnl|hg17|chr12 (23152735-23152876) | |
| 344-489, gnl|hg17|chr20 (19961132-19961239) | |
| 344-489, gnl|Hg17|chr20 (19961150-19961295) | |
| 344-489, gnl|loxAfr1|scaffold_3914 (7794-7648) | |
| 344-489, gnl|loxAfr1|scaffold_3914 (7634-7735) | |
| 344-489, gnl|mm7|chr2 (145656367-145656478) | |
| 344-489, gnl|Mm7|chr2 (145656389-145656534) | |
| 344-489, gnl|mm7|chr6 (143633110-143633276) | |
| 344-489, gnl|monDom2|scaffold_1 (55178205-55178073) | |
| 344-489, gnl|monDom2|scaffold_1 (55178041-55178148) | |
| 344-489, gnl|oryCun1|scaffold_129658 (3210-3349) | |
| 344-489, gnl|oryCun1|scaffold_206331 (130481-130373) | |
| 344-489, gnl|panTro1|chr21 (19882822-19882929) | |
| 344-489, gnl|panTro1|chrUn_random (49532782-49532923) | |
| 344-489, gnl|rheMac2|chr10 (53344009-53344114) | |
| 344-489, gnl|rheMac2|chr11 (23389849-23389982) | |
| 344-489, gnl|rn3|chr3 (134441572-134441683) | |
| 344-489, gnl|rn3|chr4 (181698773-181698934) | |
| 344-489, gnl|tetNig1|chr14 (9473336-9473191) | |
| 344-489, gnl|tetNig1|chr14 (9473189-9473277) | |
| 344-489, gnl|xenTro1|scaffold_20022 (3406-3299) | |
| 491-997, gnl|bosTau2|chr13 (26837784-26837262) | |
| 491-997, gnl|Hg17|chr20 (19961745-19962269) | |
| 491-997, gnl|Mm7|chr2 (145656660-145657171) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 344-489, gnl|bosTau2|chr13 (26838409-26838264) | |
| 344-489, gnl|canFam2|chr11 (8083106-8082963) | |
| 344-489, gnl|canFam2|chr24 (6314054-6313947) | |
| 344-489, gnl|danRer3|chrNA (38476239-38476094) | |
| 344-489, gnl|danRer3|chrNA (38476077-38476180) | |
| 344-489, gnl|dasNov1|scaffold_16257 (18908-19048) | |
| 344-489, gnl|dasNov1|scaffold_16257 (19074-18965) | |
| 344-489, gnl|echTel1|scaffold_28076 (979-833) | |
| 344-489, gnl|echTel1|scaffold_28076 (835-920) | |
| 344-489, gnl|fr1|chrUn (67006279-67006424) | |
| 344-489, gnl|fr1|chrUn (67006435-67006338) | |
| 344-489, gnl|galGal2|chr7 (37324526-37324633) | |
| 344-489, gnl|hg17|chr12 (23152735-23152876) | |
| 344-489, gnl|hg17|chr20 (19961132-19961239) | |
| 344-489, gnl|Hg17|chr20 (19961150-19961295) | |
| 344-489, gnl|loxAfr1|scaffold_3914 (7794-7648) | |
| 344-489, gnl|loxAfr1|scaffold_3914 (7634-7735) | |
| 344-489, gnl|mm7|chr2 (145656367-145656478) | |
| 344-489, gnl|Mm7|chr2 (145656389-145656534) | |
| 344-489, gnl|mm7|chr6 (143633110-143633276) | |
| 344-489, gnl|monDom2|scaffold_1 (55178205-55178073) | |
| 344-489, gnl|monDom2|scaffold_1 (55178041-55178148) | |
| 344-489, gnl|oryCun1|scaffold_129658 (3210-3349) | |
| 344-489, gnl|oryCun1|scaffold_206331 (130481-130373) | |
| 344-489, gnl|panTro1|chr21 (19882822-19882929) | |
| 344-489, gnl|panTro1|chrUn_random (49532782-49532923) | |
| 344-489, gnl|rheMac2|chr10 (53344009-53344114) | |
| 344-489, gnl|rheMac2|chr11 (23389849-23389982) | |
| 344-489, gnl|rn3|chr3 (134441572-134441683) | |
| 344-489, gnl|rn3|chr4 (181698773-181698934) | |
| 344-489, gnl|tetNig1|chr14 (9473336-9473191) | |
| 344-489, gnl|tetNig1|chr14 (9473189-9473277) | |
| 344-489, gnl|xenTro1|scaffold_20022 (3406-3299) | |
| 491-997, gnl|bosTau2|chr13 (26837784-26837262) | |
| 491-997, gnl|Hg17|chr20 (19961745-19962269) | |
| 491-997, gnl|Mm7|chr2 (145656660-145657171) |
| Expressed library(ies): 52 entry(ies) | More info |
| Expressed library(ies): 52 entry(ies) | Help | Less info |
| ssp (1.08416) | |
| ldo (0.970026) | |
| sme (0.91631) | |
| cki (0.826173) | |
| sug (0.763747) | |
| ste (0.676041) | |
| vin (0.665115) | |
| kid (0.648677) | |
| tes (0.623441) | |
| fbs (0.526039) | |
| pro (0.512033) | |
| cli (0.458435) | |
| isp (0.451128) | |
| spl (0.429553) | |
| amn (0.417711) | |
| hea (0.408998) | |
| che (0.408942) | |
| ova (0.387397) | |
| tra (0.369276) | |
| pgl (0.35545) | |
| jca (0.34188) | |
| eye (0.341006) | |
| nco (0.323468) | |
| lun (0.300978) | |
| hyp (0.285673) | |
| pty (0.285429) | |
| cst (0.280073) | |
| lyg (0.266205) | |
| nmm (0.265604) | |
| bla (0.248694) | |
| cbe (0.239234) | |
| pan (0.23596) | |
| ece (0.229305) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| gul (0.177588) | |
| ton (0.1755) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| cje (0.165235) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| ski (0.146735) | |
| liv (0.146284) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| thg (0.126791) | |
| eru (0.120048) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 52 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ssp (1.08416) | |
| ldo (0.970026) | |
| sme (0.91631) | |
| cki (0.826173) | |
| sug (0.763747) | |
| ste (0.676041) | |
| vin (0.665115) | |
| kid (0.648677) | |
| tes (0.623441) | |
| fbs (0.526039) | |
| pro (0.512033) | |
| cli (0.458435) | |
| isp (0.451128) | |
| spl (0.429553) | |
| amn (0.417711) | |
| hea (0.408998) | |
| che (0.408942) | |
| ova (0.387397) | |
| tra (0.369276) | |
| pgl (0.35545) | |
| jca (0.34188) | |
| eye (0.341006) | |
| nco (0.323468) | |
| lun (0.300978) | |
| hyp (0.285673) | |
| pty (0.285429) | |
| cst (0.280073) | |
| lyg (0.266205) | |
| nmm (0.265604) | |
| bla (0.248694) | |
| cbe (0.239234) | |
| pan (0.23596) | |
| ece (0.229305) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| gul (0.177588) | |
| ton (0.1755) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| cje (0.165235) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| ski (0.146735) | |
| liv (0.146284) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| thg (0.126791) | |
| eru (0.120048) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) |